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Gerstner, J. R., Lenz, O., Vanderheyden, W. M., Chan, M. T., Pfeiffenberger, C. and Pack, A. I. (2016). Amyloid-beta induces sleep fragmentation that is rescued by fatty acid binding proteins in Drosophila. J Neurosci Res. PubMed ID: 27320125 Zimmerman, J. E., Chan, M. T., Jackson, N., Maislin, G. and Pack, A. I. (2012). Genetic background has a major impact on differences in sleep resulting from environmental influences in Drosophila. Sleep 35(4): 545-557. PubMed ID: Rick Padgett Waksman Institute of Microbiology, Rutgers University Li, Y. and Padgett, R. W. (2012). bantam is required for optic lobe development and glial cell proliferation. PLoS One 7: e32910. PubMed ID: 22412948 O'Connor, J. T., Stevens, A. C., Shannon, E. K., Akbar, F. B., LaFever, K. S., Narayanan, N. P., Gailey, C. D., Hutson, M. S. and Page-McCaw, A. (2021). Proteolytic activation of Growth-blocking peptides triggers calcium responses through the GPCR Mthl10 during epithelial wound detection. Dev Cell. PubMed ID: 34273275 Wang, X., LaFever, K. S., Waghmare, I. and Page-McCaw, A. (2021). Extracellular spreading of Wingless is required for Drosophila oogenesis. PLoS Genet 17(4): e1009469. PubMed ID: 33798197 Waghmare, I., Wang, X. and Page-McCaw, A. (2020). Dally-like protein sequesters multiple Wnt ligands in the Drosophila germarium. Dev Biol. PubMed ID: 32473955 Ramos-Lewis, W., LaFever, K. S. and Page-McCaw, A. (2018). A scar-like lesion is apparent in basement membrane after wound repair in vivo. Matrix Biol. PubMed ID: 29981372 Waghmare, I. and Page-McCaw, A. (2018). Wnt Signaling in Stem Cell Maintenance and Differentiation in the Drosophila Germarium. Genes (Basel) 9(3). PubMed ID: 29495453 Wang, X. and Page-McCaw, A. (2018). Wnt6 maintains anterior escort cells as an integral component of the germline stem cell niche. Development [Epub ahead of print]. PubMed ID: 29361569 LaFever, K. S., Wang, X., Page-McCaw, P., Bhave, G. and Page-McCaw, A. (2017). Both Drosophila matrix metalloproteinases have released and membrane-tethered forms but have different substrates. Sci Rep 7: 44560. PubMed ID: 28300207 Wang, X. and Page-McCaw, A. (2014). A matrix metalloproteinase mediates long-distance attenuation of stem cell proliferation. J Cell Biol 206: 923-936. PubMed ID: 25267296 Broderick, S., Wang, X., Simms, N. and Page-McCaw, A. (2012). Drosophila Ninjurin A induces nonapoptotic cell death. PLoS One 7: e44567. PubMed ID: 23028562 Chou, H. Y., Lin, Y. H., Shiu, G. L., Tang, H. Y., Cheng, M. L., Shiao, M. S. and Pai, L. M. (2014). ADI1, a methionine salvage pathway enzyme, is required for Drosophila fecundity. J Biomed Sci 21: 64. PubMed ID: 25037729 Tsai, Y. C., Chiang, W., Liou, W., Lee, W. H., Chang, Y. W., Wang, P. Y., Li, Y. C., Tanaka, T., Nakamura, A. and Pai, L. M. (2014). Endophilin B is required for the Drosophila oocyte to endocytose yolk downstream of Oskar. Development 141: 563-573. PubMed ID: 24401369 Drechsler, M., Lang, L. F., Al-Khatib, L., Dirks, H., Burger, M., Schonlieb, C. B. and Palacios, I. M. (2020). Optical flow analysis reveals that Kinesin-mediated advection impacts on the orientation of microtubules in the Drosophila oocyte. Mol Biol Cell: mbcE19080440. PubMed ID: 32267197 Francis, D., Chanana, B., Fernandez, B., Gordon, B., Mak, T. and Palacios, I. M. (2019). YAP/Yorkie in the germline modulates the age-related decline of germline stem cells and niche cells. PLoS One 14(4): e0213327. PubMed ID: 30943201 Drechsler, M., Giavazzi, F., Cerbino, R. and Palacios, I. M. (2017). Active diffusion and advection in Drosophila oocytes result from the interplay of actin and microtubules. Nat Commun 8(1): 1520. PubMed ID: 29142223 Ng, B. F., Selvaraj, G. K., Mateos, C. S., Grosheva, I., Alvarez-Garcia, I., Martin-Bermudo, M. D. and Palacios, I. M. (2016). Alpha-Spectrin and integrins act together to regulate actomyosin and columnarization, and to maintain a mono-layered follicular epithelium. Development. PubMed ID: 26952981 Gomez-Lamarca, M. J., Cobreros-Reguera, L., Ibanez-Jimenez, B., Palacios, I. M. and Martin-Bermudo, M. D. (2014). Integrins regulate epithelial cell differentiation by modulating Notch activity. J Cell Sci. PubMed ID: 25179603 Saavedra, P., Vincent, J. P., Palacios, I. M., Lawrence, P. A. and Casal, J. (2014). Plasticity of both planar cell polarity and cell identity during the development of Drosophila. Elife 3: e01569. PubMed ID: 24520160 Williams, L. S., Ganguly, S., Loiseau, P., Ng, B. F. and Palacios, I. M. (2013). The auto-inhibitory domain and ATP-independent microtubule-binding region of Kinesin heavy chain are major functional domains for transport in the Drosophila germline. Development. PubMed ID: 24257625 Ganguly, S., Williams, L. S., Palacios, I. M. and Goldstein, R. E. (2012). Cytoplasmic streaming in Drosophila oocytes varies with kinesin activity and correlates with the microtubule cytoskeleton architecture. Proc Natl Acad Sci U S A 109: 15109-15114. PubMed ID: 22949706 Avery, P., Vicente-Crespo, M., Francis, D., Nashchekina, O., Alonso, C. R. and Palacios, I. M. (2011). Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner. RNA 17: 624-638. PubMed ID: 21317294 Taverner, A. M., Yang, L., Barile, Z. J., Lin, B., Peng, J., Pinharanda, A. P., Rao, A. S., Roland, B. P., Talsma, A. D., Wei, D., Petschenka, G., Palladino, M. J. and Andolfatto, P. (2019). Adaptive substitutions underlying cardiac glycoside insensitivity in insects exhibit epistasis in vivo. Elife 8. PubMed ID: 31453806 Thomas, R. E., Vincow, E. S., Merrihew, G. E., MacCoss, M. J., Davis, M. Y. and Pallanck, L. J. (2018). Glucocerebrosidase deficiency promotes protein aggregation through dysregulation of extracellular vesicles. PLoS Genet 14(9): e1007694. PubMed ID: 30256786 Drombosky, K. W., Rode, S., Kodali, R., Jacob, T. C., Palladino, M. J. and Wetzel, R. (2018). Mutational analysis implicates the amyloid fibril as the toxic entity in Huntington's disease. Neurobiol Dis. PubMed ID: 30171891 Fogle, K.J., Hertzler, J.I., Shon, J.H. and Palladino, M.J. (2016). The ATP-sensitive K channel is seizure protective and required for effective dietary therapy in a model of mitochondrial encephalomyopathy. J Neurogenet [Epub ahead of print]. PubMed ID: 27868454 Talsma, A. D., Chaves, J. F., LaMonaca, A., Wieczorek, E. D. and Palladino, M. J. (2014). Genome-wide screen for modifiers of Na (+) /K (+) ATPase alleles identifies critical genetic loci. Mol Brain 7: 89. PubMed ID: 25476251 Robert, V. J., Garvis, S. and Palladino, F. (2015). Repression of somatic cell fate in the germline. Cell Mol Life Sci [Epub ahead of print]. PubMed ID: 26043973 Roland, B. P., Amrich, C. G., Kammerer, C. J., Stuchul, K. A., Larsen, S. B., Rode, S., Aslam, A. A., Heroux, A., Wetzel, R., VanDemark, A. P. and Palladino, M. J. (2014). Triosephosphate isomerase I170V alters catalytic site, enhances stability and induces pathology in a Drosophila model of TPI deficiency. Biochim Biophys Acta 1852: 61-69. PubMed ID: 25463631 Roland, B. P., Stuchul, K. A., Larsen, S. B., Amrich, C. G., Vandemark, A. P., Celotto, A. M. and Palladino, M. J. (2013). Evidence of a triosephosphate isomerase non-catalytic function critical to behavior and longevity. J Cell Sci. PubMed ID: 23641070 Vincow, E. S., Thomas, R. E., Merrihew, G. E., MacCoss, M. J. and Pallanck, L. J. (2021). Slowed protein turnover in aging Drosophila reflects a shift in cellular priorities. J Gerontol A Biol Sci Med Sci. PubMed ID: 33453098 Pareek, G. and Pallanck, L. J. (2020). Inactivation of the mitochondrial protease Afg3l2 results in severely diminished respiratory chain activity and widespread defects in mitochondrial gene expression. PLoS Genet 16(10): e1009118. PubMed ID: 33075064 Vincow, E. S., Thomas, R. E., Merrihew, G. E., Shulman, N. J., Bammler, T. K., MacDonald, J. W., MacCoss, M. J. and Pallanck, L. J. (2019). Autophagy accounts for approximately one-third of mitochondrial protein turnover and is protein selective. Autophagy: 1-14. PubMed ID: 30865561 Pareek, G., Thomas, R. E., Vincow, E. S., Morris, D. R. and Pallanck, L. J. (2018). Lon protease inactivation in Drosophila causes unfolded protein stress and inhibition of mitochondrial translation. Cell Death Discov 5: 51. PubMed ID: 30374414 Burman, J. L., Itsara, L. S., Kayser, E. B., Suthammarak, W., Wang, A. M., Kaeberlein, M., Sedensky, M. M., Morgan, P. G. and Pallanck, L. J. (2014). A Drosophila model of mitochondrial disease caused by a complex I mutation that uncouples proton pumping from electron transfer. Dis Model Mech. PubMed ID: 25085991 Thomas, R. E., Andrews, L. A., Burman, J. L., Lin, W. Y. and Pallanck, L. J. (2014). PINK1-Parkin Pathway Activity Is Regulated by Degradation of PINK1 in the Mitochondrial Matrix. PLoS Genet 10: e1004279. PubMed ID: 24874806 Vincow, E. S., Merrihew, G., Thomas, R. E., Shulman, N. J., Beyer, R. P., Maccoss, M. J., Pallanck, L. J. (2013) The PINK1-Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo. Proc Natl Acad Sci U S A. PubMed ID: 23509287 Burman, J. L., Yu, S., Poole, A. C., Decal, R. B. and Pallanck, L. (2012). Analysis of neural subtypes reveals selective mitochondrial dysfunction in dopaminergic neurons from parkin mutants. Proc Natl Acad Sci U S A 109: 10438-10443. PubMed ID: 22691499 Chakrabarti, L., Zahra, R., Jackson, S. M., Kazemi-Esfarjani, P., Sopher, B. L., Mason, A. G., Toneff, T., Ryu, S., Shaffer, S., Kansy, J. W., Eng, J., Merrihew, G., MacCoss, M. J., Murphy, A., Goodlett, D. R., Hook, V., Bennett, C. L., Pallanck, L. J. and La Spada, A. R. (2010). Mitochondrial dysfunction in NnaD mutant flies and Purkinje cell degeneration mice reveals a role for Nna proteins in neuronal bioenergetics. Neuron 66: 835-847. PubMed ID: 20620870 Uckun, E., Wolfstetter, G., Anthonydhason, V., Kumar Sukumar, S., Umapathy, G., Molander, L., Fuchs, J. and Palmer, R. H. (2021). In vivo profiling of the Alk proximitome in the developing Drosophila brain. J Mol Biol: 167282. PubMed ID: 34624297 Wolfstetter, G., Pfeifer, K., Backman, M., Masudi, T. A., Mendoza-García, P., Chen, S., Sonnenberg, H., Sukumar, S. K., Uckun, E., Varshney, G. K., Uv, A. and Palmer, R. H. (2020). Identification of the Wallenda JNKKK as an Alk suppressor reveals increased competitiveness of Alk-expressing cells. Sci Rep 10(1): 14954. PubMed ID: 32917927 Wolfstetter, G., Pfeifer, K., van Dijk, J. R., Hugosson, F., Lu, X. and Palmer, R. H. (2017). The scaffolding protein Cnk binds to the receptor tyrosine kinase Alk to promote visceral founder cell specification in Drosophila. Sci Signal 10(502). PubMed ID: 29066538 Mendoza-Garcia, P., Hugosson, F., Fallah, M., Higgins, M. L., Iwasaki, Y., Pfeifer, K., Wolfstetter, G., Varshney, G., Popichenko, D., Gergen, J. P., Hens, K., Deplancke, B. and Palmer, R. H. (2017). The Zic family homologue Odd-paired regulates Alk expression in Drosophila. PLoS Genet 13(4): e1006617. PubMed ID: 28369060 Yamazaki, Y., Palmer, L., Alexandre, C., Kakugawa, S., Beckett, K., Gaugue, I., Palmer, R.H. and Vincent, J.P. (2016). Godzilla-dependent transcytosis promotes Wingless signalling in Drosophila wing imaginal discs. Nat Cell Biol [Epub ahead of print]. PubMed ID: 26974662 Hugosson, F., Sjogren, C., Birve, A., Hedlund, L., Eriksson, T. and Palmer, R. H. (2014). The Drosophila Midkine/Pleiotrophin homologues Miple1 and Miple2 affect adult lifespan but are dispensable for Alk signaling during embryonic gut formation. PLoS One 9: e112250. PubMed ID: 25380037 Popichenko, D., Hugosson, F., Sjogren, C., Dogru, M., Yamazaki, Y., Wolfstetter, G., Schonherr, C., Fallah, M., Hallberg, B., Nguyen, H. and Palmer, R. H. (2013). Jeb/Alk signalling regulates the Lame duck GLI family transcription factor in the Drosophila visceral mesoderm. Development. PubMed ID: 23824577 Yamazaki, Y., Schonherr, C., Varshney, G. K., Dogru, M., Hallberg, B., Palmer, R. H. (2013) Goliath family E3 ligases regulate the recycling endosome pathway via VAMP3 ubiquitylation. EMBO J. PubMed ID: 23353890 Gouzi, J. Y., Moressis, A., Walker, J. A., Apostolopoulou, A. A., Palmer, R. H., Bernards, A. and Skoulakis, E. M. (2011). The receptor tyrosine kinase Alk controls neurofibromin functions in Drosophila growth and learning. PLoS Genet 7: e1002281. PubMed ID: 21949657 Schonherr, C., Ruuth, K., Yamazaki, Y., Eriksson, T., Christensen, J., Palmer, R. H. and Hallberg, B. (2011). Activating ALK mutations found in neuroblastoma are inhibited by Crizotinib and NVP-TAE684. Biochem J 440: 405-413. PubMed ID: 21838707 Guo, P., Lee, C. H., Lei, H., Zheng, Y., Pulgar Prieto, K. D. and Pan, D. (2019). Nerfin-1 represses transcriptional output of Hippo signaling in cell competition. Elife 8. PubMed ID: 30901309 Yu, J. and Pan, D. (2018). Validating upstream regulators of Yorkie activity in Hippo signaling through scalloped-based genetic epistasis. Development 145(4). PubMed ID: 29467233 Zheng, Y., Liu, B., Wang, L., Lei, H., Pulgar Prieto, K. D. and Pan, D. (2017). Homeostatic control of Hpo/MST kinase activity through autophosphorylation-dependent recruitment of the STRIPAK PP2A phosphatase complex. Cell Rep 21(12): 3612-3623. PubMed ID: 29262338 Liu, B., Zheng, Y., Yin, F., Yu, J., Silverman, N. and Pan, D. (2016). Toll receptor-mediated Hippo signaling controls innate immunity in Drosophila. Cell 164: 406-419. PubMed ID: 26824654 Liu, B., Zheng, Y., Yin, F., Yu, J., Silverman, N. and Pan, D. (2016). Toll receptor-mediated Hippo signaling controls innate immunity in Drosophila. Cell 164: 406-419. PubMed ID: 26824654 Deng, H., Wang, W., Yu, J., Zheng, Y., Qing, Y. and Pan, D. (2015). Spectrin regulates Hippo signaling by modulating cortical actomyosin activity. Elife 4: e06567. PubMed ID: 25826608 Zheng, Y., Wang, W., Liu, B., Deng, H., Uster, E. and Pan, D. (2015). Identification of Happyhour/MAP4K as Alternative Hpo/Mst-like Kinases in the Hippo Kinase Cascade. Dev Cell [Epub ahead of print]. PubMed ID: 26364751 Qing, Y., Yin, F., Wang, W., Zheng, Y., Guo, P., Schozer, F., Deng, H. and Pan, D. (2014). The Hippo effector Yorkie activates transcription by interacting with a histone methyltransferase complex through Ncoa6. Elife: e02564. PubMed ID: 25027438 Yin, F., Yu, J., Zheng, Y., Chen, Q., Zhang, N. and Pan, D. (2013). Spatial Organization of Hippo Signaling at the Plasma Membrane Mediated by the Tumor Suppressor Merlin/NF2. Cell. PubMed ID: 24012335 Baker, R., Nakamura, N., Chandel, I., Howell, B., Lyalin, D. and Panin, V. M. (2017). Protein O-mannosyltransferases affect sensory axon wiring and dynamic chirality of body posture in the Drosophila embryo. J Neurosci. PubMed ID: 29167399 Scott, H. and Panin, V. M. (2014). N-glycosylation in regulation of the nervous system. Adv Neurobiol 9: 367-394. PubMed ID: 25151388 Scott, H. and Panin, V. M. (2014). The role of protein N-glycosylation in neural transmission. Glycobiology [Epub ahead of print]. PubMed ID: 24643084 Nakamura, M., Pandey, D. and Panin, V. M. (2012). Genetic Interactions Between Drosophila sialyltransferase and beta1,4-N-acetylgalactosaminyltransferase-A Genes Indicate Their Involvement in the Same Pathway. G3 (Bethesda) 2: 653-656. PubMed ID: 22690374 Repnikova, E., Koles, K., Nakamura, M., Pitts, J., Li, H., Ambavane, A., Zoran, M. J. and Panin, V. M. (2010). Sialyltransferase regulates nervous system function in Drosophila. J Neurosci 30: 6466-6476. PubMed ID: 20445073 Nakamura, N., Lyalin, D. and Panin, V. M. (2010). Protein O-mannosylation in animal development and physiology: from human disorders to Drosophila phenotypes. Semin Cell Dev Biol 21: 622-630. PubMed ID: 20362685 Lanson, N. A., Jr., Maltare, A., King, H., Smith, R., Kim, J. H., Taylor, J. P., Lloyd, T. E. and Pandey, U. B. (2011). A Drosophila model of FUS-related neurodegeneration reveals genetic interaction between FUS and TDP-43. Hum Mol Genet 20: 2510-2523. PubMed ID: 21487023 Pandey, U. B. and Nichols, C. D. (2011). Human disease models in Drosophila melanogaster and the role of the fly in therapeutic drug discovery. Pharmacol Rev 63: 411-436. PubMed ID: 21415126 Pahi, Z., Borsos, B. N., Vedelek, B., Shidlovskii, Y. V., Georgieva, S. G., Boros, I. M. and Pankotai, T. (2017). TAF10 and TAF10b partially redundant roles during Drosophila melanogaster morphogenesis. Transcription 8(5): 297-306. PubMed ID: 28841365 Pahi, Z., Kiss, Z., Komonyi, O., Borsos, B. N., Tora, L., Boros, I. M. and Pankotai, T. (2015). dTAF10- and dTAF10b-Containing Complexes Are Required for Ecdysone-Driven Larval-Pupal Morphogenesis in Drosophila melanogaster. PLoS One 10(11): e0142226. PubMed ID: 26556600 Borsos, B. N., Pankotai, T., Kovacs, D., Popescu, C., Pahi, Z. and Boros, I. M. (2015). Acetylations of Ftz-F1 and histone H4K5 are required for the fine-tuning of ecdysone biosynthesis during Drosophila metamorphosis. Dev Biol 404(1): 80-87. PubMed ID: 25959239 Miroschnikow, A., Schlegel, P. and Pankratz, M. J. (2020). Making Feeding Decisions in the Drosophila Nervous System. Curr Biol 30(14): R831-r840. PubMed ID: 32693083 Imura, E., Shimada-Niwa, Y., Nishimura, T., Huckesfeld, S., Schlegel, P., Ohhara, Y., Kondo, S., Tanimoto, H., Cardona, A., Pankratz, M. J. and Niwa, R. (2020). The Corazonin-PTTH Neuronal Axis Controls Systemic Body Growth by Regulating Basal Ecdysteroid Biosynthesis in Drosophila melanogaster. Curr Biol 30(11): 2156-2165.e2155. PubMed ID: 32386525 Miroschnikow, A., Schlegel, P., Schoofs, A., Hueckesfeld, S., Li, F., Schneider-Mizell, C. M., Fetter, R. D., Truman, J. W., Cardona, A. and Pankratz, M. J. (2018). Convergence of monosynaptic and polysynaptic sensory paths onto common motor outputs in a Drosophila feeding connectome. Elife 7. PubMed ID: 30526854 Schoofs, A., Huckesfeld, S. and Pankratz, M. J. (2017). Serotonergic network in the subesophageal zone modulates the motor pattern for food intake in Drosophila. J Insect Physiol [Epub ahead of print]. PubMed ID: 28735009 Surendran, S., Huckesfeld, S., Waschle, B. and Pankratz, M. J. (2017). Pathogen induced food evasion behavior in Drosophila larvae. J Exp Biol. PubMed ID: 28254879 Schlegel, P., Texada, M. J., Miroschnikow, A., Schoofs, A., Huckesfeld, S., Peters, M., Schneider-Mizell, C. M., Lacin, H., Li, F., Fetter, R. D., Truman, J. W., Cardona, A. and Pankratz, M. J. (2016). Synaptic transmission parallels neuromodulation in a central food-intake circuit. Elife 5. PubMed ID: 27845623 Hückesfeld, S., Peters, M. and Pankratz, M.J. (2016). Central relay of bitter taste to the protocerebrum by peptidergic interneurons in the Drosophila brain. Nat Commun 7: 12796. PubMed ID: 27619503 Huckesfeld, S., Schoofs, A., Schlegel, P., Miroschnikow, A. and Pankratz, M. J. (2015). Localization of motor neurons and central pattern generators for motor patterns underlying feeding behavior in Drosophila larvae. PLoS One 10: e0135011. PubMed ID: 26252658 Alekseyenko, O. V., Chan, Y. B., Fernandez Mde, L., Bulow, T., Pankratz, M. J. and Kravitz, E. A. (2014). Single serotonergic neurons that modulate aggression in Drosophila. Curr Biol 24: 2700-2707. PubMed ID: 25447998 Papagiannouli, F. (2013) The internal structure of embryonic gonads and testis development in Drosophila melanogaster requires scrib, lgl and dlg activity in the soma. Int J Dev Biol 57: 25-34. PubMed ID: 23585349 Sorge, S., Ha, N., Polychronidou, M., Friedrich, J., Bezdan, D., Kaspar, P., Schaefer, M. H., Ossowski, S., Henz, S. R., Mundorf, J., Ratzer, J., Papagiannouli, F. and Lohmann, I. (2012). The cis-regulatory code of Hox function in Drosophila. EMBO J 31: 3323-3333. PubMed ID: 22781127 Papagiannouli, F. and Lohmann, I. (2012). Shaping the niche: lessons from the Drosophila testis and other model systems. Biotechnol J 7: 723-736. PubMed ID: 22488937 Zhai, Z., Ha, N., Papagiannouli, F., Hamacher-Brady, A., Brady, N., Sorge, S., Bezdan, D. and Lohmann, I. (2012). Antagonistic regulation of apoptosis and differentiation by the Cut transcription factor represents a tumor-suppressing mechanism in Drosophila. PLoS Genet 8: e1002582. PubMed ID: 22438831 Papatsenko, D. and Levine, M. (2011). The Drosophila gap gene network is composed of two parallel toggle switches. PLoS One 6: e21145. PubMed ID: 21747931 Papatsenko, D., Levine, M. and Goltsev, Y. (2011). Clusters of temporal discordances reveal distinct embryonic patterning mechanisms in Drosophila and anopheles. PLoS Biol 9: e1000584. PubMed ID: 21283609 Pardue, M. L. and DeBaryshe, P. G. (2011). Retrotransposons that maintain chromosome ends. Proc Natl Acad Sci U S A 108: 20317-20324. PubMed ID: 21821789 George, J. A., Traverse, K. L., DeBaryshe, P. G., Kelley, K. J. and Pardue, M. L. (2010). Evolution of diverse mechanisms for protecting chromosome ends by Drosophila TART telomere retrotransposons. Proc Natl Acad Sci U S A 107: 21052-21057. PubMed ID: 21088221 Solana-Manrique, C., Sanz, F. J., Ripolles, E., Bano, M. C., Torres, J., Munoz-Soriano, V. and Paricio, N. (2020). Enhanced activity of glycolytic enzymes in Drosophila and human cell models of Parkinson's disease based on DJ-1 deficiency. Free Radic Biol Med. PubMed ID: 32726690 Munoz-Soriano, V., Belacortu, Y., Sanz, F. J., Solana-Manrique, C., Dillon, L., Suay-Corredera, C., Ruiz-Romero, M., Corominas, M. and Paricio, N. (2018). Cbt modulates Foxo activation by positively regulating insulin signaling in Drosophila embryos. Biochim Biophys Acta. PubMed ID: 30055320 Sanz, F. J., Solana-Manrique, C., Munoz-Soriano, V., Calap-Quintana, P., Molto, M. D. and Paricio, N. (2017). Identification of potential therapeutic compounds for Parkinson's disease using Drosophila and human cell models. Free Radic Biol Med 108: 683-691. PubMed ID: 28455141 Munoz-Soriano, V., Santos, D., Durupt, F. C., Casani, S. and Paricio, N. (2015). Scabrous overexpression in the eye affects R3/R4 cell fate specification and inhibits Notch signaling. Dev Dyn. PubMed ID: 26505171 Munoz-Soriano, V., Belacortu, Y. and Paricio, N. (2012). Planar cell polarity signaling in collective cell movements during morphogenesis and disease. Curr Genomics 13: 609-622. PubMed ID: 23730201 Casani, S., Gomez-Pastor, R., Matallana, E., Paricio, N. (2013) Antioxidant compounds supplementation prevents oxidative damage in a Drosophila model of Parkinson's disease. Free Radic Biol Med. PubMed ID: 23548634 Munoz-Soriano, V., Ruiz, C., Perez-Alonso, M., Mlodzik, M., Paricio, N. (2013) Nemo regulates cell dynamics and represses the expression of miple, a midkine/pleiotrophin cytokine, during ommatidial rotation. Dev Biol. PubMed ID: 23428616 Munoz-Soriano, V., Nieto-Arellano, R. and Paricio, N. (2012). Septin 4, the drosophila ortholog of human CDCrel-1, accumulates in parkin mutant brains and is functionally related to the Nedd4 E3 ubiquitin ligase. J Mol Neurosci 48: 136-143. PubMed ID: 22562816 Belacortu, Y., Weiss, R., Kadener, S. and Paricio, N. (2012). Transcriptional activity and nuclear localization of Cabut, the Drosophila ortholog of vertebrate TGF-beta-inducible early-response gene (TIEG) proteins. PLoS One 7: e32004. PubMed ID: 22359651 Nair, S., Bahn, J. H., Lee, G., Yoo, S. and Park, J. H. (2020). A homeobox transcription factor Scarecrow (SCRO) negatively regulates Pdf neuropeptide expression through binding an identified cis-acting element in Drosophila melanogaster. Mol Neurobiol. PubMed ID: 31950355 Wang, Z., Lee, G., Vuong, R. and Park, J. H. (2019). Two-factor specification of apoptosis: TGF-beta signaling acts cooperatively with ecdysone signaling to induce cell- and stage-specific apoptosis of larval neurons during metamorphosis in Drosophila melanogaster. Apoptosis 24(11-12): 972-989. PubMed ID: 31641960 Lee, G., Sehgal, R., Wang, Z. and Park, J. H. (2019). Ultraspiracle-independent anti-apoptotic function of ecdysone receptors is required for the survival of larval peptidergic neurons via suppression of grim expression in Drosophila melanogaster. Apoptosis. PubMed ID: 30637539 Lee, G., Kim, J., Kim, Y., Yoo, S. and Park, J. H. (2018). Identifying and monitoring neurons that undergo metamorphosis-regulated cell death (metamorphoptosis) by a neuron-specific caspase sensor (Casor) in Drosophila melanogaster. Apoptosis 23(1): 41-53. PubMed ID: 29224041 Kim, G., Lee, Y., Lee, G., Cho, Y., Lee, Y., Jang, Y., Paik, D. and Park, J. (2014). Overexpression of malic enzyme in the larval stage extends Drosophila lifespan. Biochem Biophys Res Commun. PubMed ID: 25511696 Sha, K., Choi, S. H., Im, J., Lee, G. G., Loeffler, F. and Park, J. H. (2014). Regulation of Ethanol-Related Behavior and Ethanol Metabolism by the Corazonin Neurons and Corazonin Receptor in Drosophila melanogaster. PLoS One 9: e87062. PubMed ID: 24489834 Lee, G. G., Kikuno, K., Nair, S. and Park, J. H. (2013). Mechanisms of post-ecdysis-associated programmed cell death of peptidergic neurons in drosophila melanogaster. J Comp Neurol. PubMed ID: 23784845 Lee, G., Sehgal, R., Wang, Z., Nair, S., Kikuno, K., Chen, C. H., Hay, B., Park, J. H. (2013) Essential role of grim-led programmed cell death for the establishment of corazonin-producing peptidergic nervous system during embryogenesis and metamorphosis in Drosophila melanogaster. Biol Open 2: 283-294. PubMed ID: 23519152 Lee, G., Kikuno, K., Bahn, J. H., Kim, K. M. and Park, J. H. (2013). Dopamine D2 Receptor as a Cellular Component Controlling Nocturnal Hyperactivities in Drosophila melanogaster. Chronobiol Int. PubMed ID: 23286280 Kalra, B. and Parkash, R. (2014). Trade-off of ovarian lipids and total body lipids for fecundity and starvation resistance in tropical populations of Drosophila melanogaster. J Evol Biol. PubMed ID: 25223796 Chahal, J., Kataria, S. K., Parkash, R. (2013) Invasion and adaptation of a warm adapted species to montane localities: effect of acclimation potential. J Exp Biol. PubMed ID: 23348937 Parkash, R., Ramniwas, S., Kajla, B. and Aggarwal, D. D. (2012). Divergence of desiccation-related traits in two Drosophila species of the takahashii subgroup from the western Himalayas. J Exp Biol 215: 2181-2191. PubMed ID: 22675178 Parkash, R., Aggarwal, D. D., Ranga, P. and Singh, D. (2012). Divergent strategies for adaptation to desiccation stress in two Drosophila species of immigrans group. J Comp Physiol B 182: 751-769. PubMed ID: 22407357 Nakamura, M., Verboon, J. M., Prentiss, C. L. and Parkhurst, S. M. (2020). The kinesin-like protein Pavarotti functions noncanonically to regulate actin dynamics. J Cell Biol 219(9). PubMed ID: 32673395 Verboon, J. M., Decker, J. R., Nakamura, M. and Parkhurst, S. M. (2018). Wash exhibits context dependent phenotypes and, along with the WASH Regulatory Complex, regulates Drosophila oogenesis. J Cell Sci. PubMed ID: 29549166 Nakamura, M., Verboon, J. M. and Parkhurst, S. M. (2017). Prepatterning by RhoGEFs governs Rho GTPase spatiotemporal dynamics during wound repair. J Cell Biol [Epub ahead of print]. PubMed ID: 28923977 Pitmon, E., Stephens, G., Parkhurst, S. J., Wolf, F. W., Kehne, G., Taylor, M. and Lebestky, T. (2016). The D1 Family Dopamine Receptor, DopR, potentiates hindleg grooming behavior in Drosophila. Genes Brain Behav [Epub ahead of print]. PubMed ID: 26749475 Verboon, J. M. and Parkhurst, S. M. (2015). Rho family GTPases bring a familiar ring to cell wound repair. Small GTPases 6: 1-7. PubMed ID: 25862160 Verboon, J. M. and Parkhurst, S. M. (2015). Rho family GTPase functions in Drosophila epithelial wound repair. Small GTPases 6: 33-40. PubMed ID: 25862164 Verboon, J.M., Rincon-Arano, H., Werwie, T.R., Delrow, J.J., Scalzo, D., Nandakumar, V., Groudine, M. and Parkhurst, S.M. (2015). Wash interacts with Lamin and affects global nuclear organization. Curr Biol [Epub ahead of print]. PubMed ID: 25754639 Abreu-Blanco, M. T., Verboon, J. M. and Parkhurst, S. M. (2013). Coordination of Rho Family GTPase Activities to Orchestrate Cytoskeleton Responses during Cell Wound Repair. Curr Biol. PubMed ID: 24388847 Rincon-Arano, H., Halow, J., Delrow, J. J., Parkhurst, S. M. and Groudine, M. (2012). UpSET Recruits HDAC Complexes and Restricts Chromatin Accessibility and Acetylation at Promoter Regions. Cell 151: 1214-1228. PubMed ID: 23177352 Devambez, I., van Dijk, J., Benlefki, S., Layalle, S., Grau, Y., Rogowski, K., Parmentier, M. L. and Soustelle, L. (2017). Identification of DmTTLL5 as a Major Tubulin Glutamylase in the Drosophila Nervous System. Sci Rep 7(1): 16254. PubMed ID: 29176602 Bouge, A. L. and Parmentier, M. L. (2016). Tau excess impairs mitosis and kinesin-5 function, leading to aneuploidy and cell death. Dis Model Mech [Epub ahead of print]. PubMed ID: Lepicard, S., Franco, B., de Bock, F. and Parmentier, M. L. (2014). A presynaptic role of microtubule-associated protein 1/futsch in Drosophila: regulation of active zone number and neurotransmitter release. J Neurosci 34: 6759-6771. PubMed ID: 24828631 Morel, V., Lepicard, S., A, N. R., Parmentier, M. L. and Schaeffer, L. (2014). Drosophila Nesprin-1 controls glutamate receptor density at neuromuscular junctions. Cell Mol Life Sci. PubMed ID: 24492984 Devambez, I., Ali Agha, M., Mitri, C., Bockaert, J., Parmentier, M. L., Marion-Poll, F., Grau, Y. and Soustelle, L. (2013). Galphao is required for L-canavanine detection in Drosophila. PLoS One 8: e63484. PubMed ID: 23671680 Redt-Clouet, C., Trannoy, S., Boulanger, A., Tokmatcheva, E., Savvateeva-Popova, E., Parmentier, M. L., Preat, T. and Dura, J. M. (2012). Mushroom body neuronal remodelling is necessary for short-term but not for long-term courtship memory in Drosophila. Eur J Neurosci 35: 1684-1691. PubMed ID: 22571719 Lerner, H., Rozenfeld, E., Rozenman, B., Huetteroth, W. and Parnas, M. (2020). Differential Role for a Defined Lateral Horn Neuron Subset in Naive Odor Valence in Drosophila. Sci Rep 10(1): 6147. PubMed ID: 32273557 Rozenfeld, E., Lerner, H. and Parnas, M. (2019). Muscarinic modulation of antennal lobe GABAergic local neurons shapes odor coding and behavior. Cell Rep 29(10): 3253-3265.e3254. PubMed ID: 31801087 Bielopolski, N., Amin, H., Apostolopoulou, A. A., Rozenfeld, E., Lerner, H., Huetteroth, W., Lin, A. C. and Parnas, M. (2019). Inhibitory muscarinic acetylcholine receptors enhance aversive olfactory learning in adult Drosophila. Elife 8. PubMed ID: 31215865 Bentzur, A., Shmueli, A., Omesi, L., Ryvkin, J., Knapp, J. M., Parnas, M., Davis, F. P. and Shohat-Ophir, G. (2018). Odorant binding protein 69a connects social interaction to modulation of social responsiveness in Drosophila. PLoS Genet 14(4): e1007328. PubMed ID: 29630598 Parnas, M., Lin, A. C., Huetteroth, W. and Miesenbock, G. (2013). Odor discrimination in Drosophila: from neural population codes to behavior. Neuron 79(5): 932-944. PubMed ID: 24012006 Jiang, Y., Seimiya, M., Schlumpf, T. B. and Paro, R. (2018). An intrinsic tumour eviction mechanism in Drosophila mediated by steroid hormone signalling. Nat Commun 9(1): 3293. PubMed ID: 30120247 Torres, J., Monti, R., Moore, A. L., Seimiya, M., Jiang, Y., Beerenwinkel, N., Beisel, C., Beira, J. V. and Paro, R. (2018). A switch in transcription and cell fate governs the onset of an epigenetically-deregulated tumor in Drosophila. Elife 7. PubMed ID: 29560857 Pereira, A. and Paro, R. (2017). Pho dynamically interacts with Spt5 to facilitate transcriptional switches at the hsp70 locus. Epigenetics Chromatin 10(1): 57. PubMed ID: 29208012 Akmammedov, A., Geigges, M. and Paro, R. (2017). Single vector non-leaky gene expression system for Drosophila melanogaster. Sci Rep 7(1): 6899. PubMed ID: 28761084 Ciabrelli, F., Comoglio, F., Fellous, S., Bonev, B., Ninova, M., Szabo, Q., Xuereb, A., Klopp, C., Aravin, A., Paro, R., Bantignies, F. and Cavalli, G. (2017). Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila. Nat Genet 49(6): 876-886. PubMed ID: 28436983 Comoglio, F., Schlumpf, T., Schmid, V., Rohs, R., Beisel, C. and Paro, R. (2015). High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins. Cell Rep [Epub ahead of print]. PubMed ID: 25921534 Katsuyama, T., Comoglio, F., Seimiya, M., Cabuy, E. and Paro, R. (2015). During Drosophila disc regeneration, JAK/STAT coordinates cell proliferation with Dilp8-mediated developmental delay. Proc Natl Acad Sci U S A [Epub ahead of print]. PubMed ID: 25902518 Sievers, C., Comoglio, F., Seimiya, M., Merdes, G. and Paro, R. (2014). A Deterministic Analysis of Genome Integrity during Neoplastic Growth in Drosophila. PLoS One 9: e87090. PubMed ID: 24516544 Comoglio, F. and Paro, R. (2014). Combinatorial modeling of chromatin features quantitatively predicts DNA replication timing in Drosophila. PLoS Comput Biol 10: e1003419. PubMed ID: 24465194 Kushnir, T., Mezuman, S., Bar-Cohen, S., Lange, R., Paroush, Z. and Helman, A. (2017). Novel interplay between JNK and Egfr signaling in Drosophila dorsal closure. PLoS Genet 13(6): e1006860. PubMed ID: 28628612 Grossman, R. and Paroush, Z. (2017). High-throughput in vitro identification of direct MAPK/Erk substrates. Methods Mol Biol 1487: 127-135. PubMed ID: 27924563 Cinnamon, E., Makki, R., Sawala, A., Wickenberg, L. P., Blomquist, G. J., Tittiger, C., Paroush, Z. and Gould, A. P. (2016). Drosophila Spidey/Kar Regulates Oenocyte Growth via PI3-Kinase Signaling. PLoS Genet 12(8): e1006154. PubMed ID: 27500738 Nir, R., Grossman, R., Paroush, Z. and Volk, T. (2012). Phosphorylation of the Drosophila melanogaster RNA-binding protein HOW by MAPK/ERK enhances its dimerization and activity. PLoS Genet 8(3): e1002632. PubMed ID: 22479211 Jiang, N., Rasmussen, J. P., Clanton, J. A., Rosenberg, M. F., Luedke, K. P., Cronan, M. R., Parker, E. D., Kim, H. J., Vaughan, J. C., Sagasti, A. and Parrish, J. Z. (2019). A conserved morphogenetic mechanism for epidermal ensheathment of nociceptive sensory neurites. Elife 8. PubMed ID: 30855229 Yan, C., Wang, F., Peng, Y., Williams, C. R., Jenkins, B., Wildonger, J., Kim, H. J., Perr, J. B., Vaughan, J. C., Kern, M. E., Falvo, M. R., O'Brien, E. T., 3rd, Superfine, R., Tuthill, J. C., Xiang, Y., Rogers, S. L. and Parrish, J. Z. (2018). Microtubule acetylation is required for mechanosensation in Drosophila. Cell Rep 25(4): 1051-1065.e1056. PubMed ID: 30355484 Hoyer, N., Zielke, P., Hu, C., Petersen, M., Sauter, K., Scharrenberg, R., Peng, Y., Kim, C. C., Han, C., Parrish, J. Z. and Soba, P. (2018). Ret and Substrate-Derived TGF-beta Maverick Regulate Space-Filling Dendrite Growth in Drosophila Sensory Neurons. Cell Rep 24(9): 2261-2272.e2265. PubMed ID: 30157422 Meltzer, S., Yadav, S., Lee, J., Soba, P., Younger, S. H., Jin, P., Zhang, W., Parrish, J., Jan, L. Y. and Jan, Y. N. (2016). Epidermis-derived Semaphorin promotes dendrite self-avoidance by regulating dendrite-substrate adhesion in Drosophila sensory neurons. Neuron 89: 741-755. PubMed ID: 26853303 Lin, W. Y., Williams, C. R., Yan, C. and Parrish, J. Z. (2016). Functions of the SLC36 transporter Pathetic in growth control. Fly (Austin): 0. PubMed ID: 26735916 Peng, Y., Lee, J., Rowland, K., Wen, Y., Hua, H., Carlson, N., Lavania, S., Parrish, J. Z. and Kim, M. D. (2015). Regulation of dendrite growth and maintenance by exocytosis. J Cell Sci 128: 4279-4292. PubMed ID: 26483382 Lin, W. Y., Williams, C., Yan, C., Koledachkina, T., Luedke, K., Dalton, J., Bloomsburg, S., Morrison, N., Duncan, K. E., Kim, C. C. and Parrish, J. Z. (2015). The SLC36 transporter Pathetic is required for extreme dendrite growth in Drosophila sensory neurons. Genes Dev 29: 1120-1135. PubMed ID: 26063572 Lee, J., Peng, Y., Lin, W. Y. and Parrish, J. Z. (2015). Coordinate control of terminal dendrite patterning and dynamics by the membrane protein Raw. Development 142: 162-173. PubMed ID: 25480915 Jiang, N., Soba, P., Parker, E., Kim, C. C. and Parrish, J. Z. (2014). The microRNA bantam regulates a developmental transition in epithelial cells that restricts sensory dendrite growth. Development 141: 2657-2668. PubMed ID: 24924190 Glaser-Schmitt, A., Wittmann, M. J., Ramnarine, T. J. S. and Parsch, J. (2021). Sexual antagonism, temporally fluctuating selection, and variable dominance affect a regulatory polymorphism in Drosophila melanogaster. Mol Biol Evol. PubMed ID: 34289067 Belyi, A., Argyridou, E. and Parsch, J. (2020). The influence of chromosomal environment on X-linked gene expression in Drosophila melanogaster. Genome Biol Evol. PubMed ID: 33104185 Ramnarine, T. J. S., Glaser-Schmitt, A., Catalan, A. and Parsch, J. (2019). Population genetic and functional analysis of a cis-regulatory polymorphism in the Drosophila melanogaster Metallothionein A gene. Genes (Basel) 10(2). PubMed ID: 30769915 Argyridou, E. and Parsch, J. (2018). Regulation of the X chromosome in the germline and soma of Drosophila melanogaster males. Genes (Basel) 9(5). PubMed ID: 29734690 AGlaser-Schmitt, A. and Parsch, J. (2018). Functional characterization of adaptive variation within a cis-regulatory element influencing Drosophila melanogaster growth. PLoS Biol 16(1): e2004538. PubMed ID: 29324742 Catalan, A., Glaser-Schmitt, A., Argyridou, E., Duchen, P. and Parsch, J. (2016). An indel polymorphism in the MtnA 3' untranslated region is associated with gene expression variation and Local Adaptation in Drosophila melanogaster. PLoS Genet 12: e1005987. PubMed ID: 27120580 Huylmans, A.K. and Parsch, J. (2015). Variation in the X:autosome distribution of male-biased genes among Drosophila melanogaster tissues and its relationship with dosage compensation. Genome Biol Evol [Epub ahead of print]. PubMed ID: 26108491 Huylmans, A. K. and Parsch, J. (2014). Population- and Sex-Biased Gene Expression in the Excretion Organs of Drosophila melanogaster. G3 (Bethesda). PubMed ID: 25246242 Glaser-Schmitt, A., Catalan, A. and Parsch, J. (2013). Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster. Philos Trans R Soc Lond B Biol Sci 368: 20130024. PubMed ID: 24218636 Kemkemer, C., Catalan, A. and Parsch, J. (2013). 'Escaping' the X chromosome leads to increased gene expression in the male germline of Drosophila melanogaster. Heredity (Edinb). PubMed ID: 24022496 Sun, T., Song, Y., Teng, D., Chen, Y., Dai, J., Ma, M., Zhang, W. and Pastor-Pareja, J. C. (2021). Atypical laminin spots and pull-generated microtubule-actin projections mediate Drosophila wing adhesion. Cell Rep 36(10): 109667. PubMed ID: 34496252 Yang, K., Liu, M., Feng, Z., Rojas, M., Zhou, L., Ke, H. and Pastor-Pareja, J. C. (2021). ER exit sites in Drosophila display abundant ER-Golgi vesicles and pearled tubes but no megacarriers. Cell Rep 36(11): 109707. PubMed ID: 34525362 Chen, Y., Sun, T., Bi, Z., Ni, J. Q., Pastor-Pareja, J. C. and Javid, B. (2020). Premature termination codon readthrough in Drosophila varies in a developmental and tissue-specific manner. Sci Rep 10(1): 8485. PubMed ID: 32444687 Sun, T., Song, Y., Dai, J., Mao, D., Ma, M., Ni, J. Q., Liang, X. and Pastor-Pareja, J. C., (2019). Spectraplakin Shot maintains perinuclear microtubule organization in Drosophila polyploid cells. Dev Cell. PubMed ID: 31006649 Ke, H., Feng, Z., Liu, M., Sun, T., Dai, J., Ma, M., Liu, L. P., Ni, J. Q. and Pastor-Pareja, J. C. (2018). Collagen secretion screening in Drosophila supports a common secretory machinery and multiple Rab requirements. J Genet Genomics. PubMed ID: 29935791 Ma, M., Cao, X., Dai, J. and Pastor-Pareja, J. C. (2017). Basement Membrane Manipulation in Drosophila Wing Discs Affects Dpp Retention but Not Growth Mechanoregulation. Dev Cell 42(1): 97-106.e104. PubMed ID: 28697337 Dai, J., Ma, M., Feng, Z. and Pastor-Pareja, J. C. (2017). Inter-adipocyte Adhesion and Signaling by Collagen IV Intercellular Concentrations in Drosophila. Curr Biol 27(18): 2729-2740.e2724. PubMed ID: 28867208 Ma, M., Cao, X., Dai, J. and Pastor-Pareja, J. C. (2017). Basement Membrane Manipulation in Drosophila Wing Discs Affects Dpp Retention but Not Growth Mechanoregulation. Dev Cell 42(1): 97-106.e104. PubMed ID: 28697337 Liu, M., Feng, Z., Ke, H., Liu, Y., Sun, T., Dai, J., Cui, W. and Pastor-Pareja, J. C. (2017). Tango1 spatially organizes ER exit sites to control ER export. J Cell Biol. PubMed ID: 28280122 Pastor-Pareja, J. C. and Xu, T. (2013). Dissecting Social Cell Biology and Tumors Using Drosophila Genetics. Annu Rev Genet. PubMed ID: 23988119 Niccoli, T., Kerr, F., Snoeren, I., Fabian, D., Aleyakpo, B., Ivanov, D., Sofola-Adesakin, O., Cryar, A., Adcott, J., Thornton, J. and Partridge, L. (2021). Activating transcription factor 4-dependent lactate dehydrogenase activation as a protective response to amyloid beta toxicity. Brain Commun 3(2): fcab053. PubMed ID: 33977265 Lu, Y. X., Regan, J. C., Eßer, J., Drews, L. F., Weinseis, T., Stinn, J., Hahn, O., Miller, R. A., Grönke, S. and Partridge, L. (2021). A TORC1-histone axis regulates chromatin organisation and non-canonical induction of autophagy to ameliorate ageing. Elife 10. PubMed ID: 33988501 Atilano, M. L., Grpnke, S., Niccoli, T., Kempthorne, L., Hahn, O., Moron-Oset, J., Hendrich, O., Dyson, M., Adams, M. L., Hull, A., Salcher-Konrad, M. T., Monaghan, A., Bictash, M., Glaria, I., Isaacs, A. M. and Partridge, L. (2021). Enhanced insulin signalling ameliorates C9orf72 hexanucleotide repeat expansion toxicity in Drosophila. Elife 10. PubMed ID: 33739284 Fabian, D. K., Melike Donertaş, H., Fuentealba, M., Partridge, L. and Thornton, J. M. (2021). Transposable element landscape in Drosophila populations selected for longevity. Genome Biol Evol. PubMed ID: 33595657 Bolukbasi, E., Woodling, N. S., Ivanov, D. K., Adcott, J., Foley, A., Rajasingam, A., Gittings, L. M., Aleyakpo, B., Niccoli, T., Thornton, J. M. and Partridge, L. (2021). Cell type-specific modulation of healthspan by Forkhead family transcription factors in the nervous system. Proc Natl Acad Sci U S A 118(8). PubMed ID: 33593901 Bjedov, I., Cocheme, H. M., Foley, A., Wieser, D., Woodling, N. S., Castillo-Quan, J. I., Norvaisas, P., Lujan, C., Regan, J. C., Toivonen, J. M., Murphy, M. P., Thornton, J., Kinghorn, K. J., Neufeld, T. P., Cabreiro, F. and Partridge, L. (2020). Fine-tuning autophagy maximises lifespan and is associated with changes in mitochondrial gene expression in Drosophila. PLoS Genet 16(11): e1009083. PubMed ID: 33253201 Scholes, H. M., Cryar, A., Kerr, F., Sutherland, D., Gethings, L. A., Vissers, J. P. C., Lees, J. G., Orengo, C. A., Partridge, L. and Thalassinos, K. (2020). Dynamic changes in the brain protein interaction network correlates with progression of Ab42 pathology in Drosophila. Sci Rep 10(1): 18517. PubMed ID: 33116184 Woodling, N. S., Rajasingam, A., Minkley, L. J., Rizzo, A. and Partridge, L. (2020). Independent glial subtypes delay development and extend healthy lifespan upon reduced insulin-PI3K signalling. BMC Biol 18(1): 124. PubMed ID: 32928209 Weigelt, C. M., Sehgal, R., Tain, L. S., Cheng, J., Eßer, J., Pahl, A., Dieterich, C., Gronke, S. and Partridge, L. (2020). An Insulin-Sensitive Circular RNA that Regulates Lifespan in Drosophila. Mol Cell 79(2): 268-279.e265. PubMed ID: 32592682 Yu, Y., Niccoli, T., Ren, Z., Woodling, N. S., Aleyakpo, B., Szabadkai, G. and Partridge, L. (2020). PICALM rescues glutamatergic neurotransmission, behavioural function, and survival in a Drosophila model of Abeta42 toxicity. Hum Mol Genet. PubMed ID: 32592479 Gu, S., Wang, F., Patel, N. P., Bourgeois, J. A. and Huang, J. H. (2019). A Model for Basic Emotions Using Observations of Behavior in Drosophila. Front Psychol 10: 781. PubMed ID: 31068849 Patel, R. S., Carter, G., Cooper, D. R., Apostolatos, H. and Patel, N. A. (2014). Transformer 2beta homolog (Drosophila) (TRA2B) regulates protein kinase C deltaI (PKCdeltaI) splice variant expression during 3T3L1 preadipocyte cell cycle. J Biol Chem 289(46): 31662-31672. PubMed ID: 25261467 Hoxha, V., Lama, C., Chang, P. L., Saurabh, S., Patel, N., Olate, N. and Dauwalder, B. (2013). Sex-specific signaling in the blood-brain barrier is required for male courtship in Drosophila. PLoS Genet 9(1): e1003217. PubMed ID: 23359644 Dehnen, L., Janz, M., Verma, J. K., Psathaki, O. E., Langemeyer, L., Fröhlich, F., Heinisch, J. J., Meyer, H., Ungermann, C. and Paululat, A. (2020). A trimeric metazoan Rab7 GEF complex is crucial for endocytosis and scavenger function. J Cell Sci. PubMed ID: 32499409 Beyenbach, K. W., Schoene, F., Breitsprecher, L. F., Tiburcy, F., Furuse, M., Izumi, Y., Meyer, H., Jonusaite, S., Rodan, A. R. and Paululat, A. (2020). The Septate Junction Protein Tetraspanin 2A is critical to the Structure and Function of Malpighian tubules in Drosophila melanogaster. Am J Physiol Cell Physiol. PubMed ID: 32267718 Schiemann, R., Lammers, K., Janz, M., Lohmann, J., Paululat, A. and Meyer, H. (2018). Identification and in vivo characterisation of cardioactive peptides in Drosophila melanogaster. Int J Mol Sci 20(1). PubMed ID: 30577424 Wilmes, A. C., Klinke, N., Rotstein, B., Meyer, H. and Paululat, A. (2018). Biosynthesis and assembly of the Collagen IV-like protein Pericardin in Drosophila melanogaster. Biol Open 7(4). PubMed ID: 29685999 Rotstein, B., Post, Y., Reinhardt, M., Lammers, K., Buhr, A., Heinisch, J. J., Meyer, H. and Paululat, A. (2018). Distinct domains in the matricellular protein Lonely heart are crucial for cardiac extracellular matrix formation and heart function in Drosophila. J Biol Chem [Epub ahead of print]. PubMed ID: 29599288 Psathaki, O. E., Dehnen, L., Hartley, P. S. and Paululat, A. (2018). Drosophila pericardial nephrocyte ultrastructure changes during ageing. Mech Ageing Dev 173: 9-20. PubMed ID: 29702130 Sellin, J., Schulze, H., Paradis, M., Gosejacob, D., Papan, C., Shevchenko, A., Psathaki, O. E., Paululat, A., Thielisch, M., Sandhoff, K. and Hoch, M. (2017). Characterization of Drosophila saposin-related mutants as a model for lysosomal sphingolipid storage diseases. Dis Model Mech. PubMed ID: 28389479 Lammers, K., Abeln, B., Husken, M., Lehmacher, C., Psathaki, O. E., Alcorta, E., Meyer, H. and Paululat, A. (2017). Formation and function of intracardiac valve cells in the Drosophila heart. J Exp Biol [Epub ahead of print]. PubMed ID: 28254880 Hallier, B., Schiemann, R., Cordes, E., Vitos-Faleato, J., Walter, S., Heinisch, J. J., Malmendal, A., Paululat, A. and Meyer, H. (2016). Drosophila neprilysins control insulin signaling and food intake via cleavage of regulatory peptides. Elife 5. PubMed ID: 27919317 Ray, S., Rosenberg, M. I., Chanut-Delalande, H., Decaras, A., Schwertner, B., Toubiana, W., Auman, T., Schnellhammer, I., Teuscher, M., Valenti, P., Khila, A., Klingler, M. and Payre, F. (2019). The mlpt/Ubr3/Svb module comprises an ancient developmental switch for embryonic patterning. Elife 8. PubMed ID: 30896406 Bohere, J., Mancheno-Ferris, A., Al Hayek, S., Zanet, J., Valenti, P., Akino, K., Yamabe, Y., Inagaki, S., Chanut-Delalande, H., Plaza, S., Kageyama, Y., Osman, D., Polesello, C. and Payre, F. (2018). Shavenbaby and Yorkie mediate Hippo signaling to protect adult stem cells from apoptosis. Nat Commun 9(1): 5123. PubMed ID: 30504772 Gomez-Lamarca, M. J., Falo-Sanjuan, J., Stojnic, R., Abdul Rehman, S., Muresan, L., Jones, M. L., Pillidge, Z., Cerda-Moya, G., Yuan, Z., Baloul, S., Valenti, P., Bystricky, K., Payre, F., O'Holleran, K., Kovall, R. and Bray, S. J. (2018). Activation of the Notch Signaling Pathway In Vivo Elicits Changes in CSL Nuclear Dynamics. Dev Cell 44(5): 611-623 e617. PubMed ID: 29478922 Zanet, J., Benrabah, E., Li, T., Pelissier-Monier, A., Chanut-Delalande, H., Ronsin, B., Bellen, H. J., Payre, F. and Plaza, S. (2015). Pri sORF peptides induce selective proteasome-mediated protein processing. Science 349(6254): 1356-1358. PubMed ID: 26383956 Crocker, J., Abe, N., Rinaldi, L., McGregor, A. P., Frankel, N., Wang, S., Alsawadi, A., Valenti, P., Plaza, S., Payre, F., Mann, R. S. and Stern, D. L. (2015). Low affinity binding site clusters confer hox specificity and regulatory robustness. Cell 160(1-2): 191-203. PubMed ID: 25557079 Rogers, E. M., Allred, S. C. and Peifer, M. (2021). Abelson kinase's intrinsically disordered region plays essential roles in protein function and protein stability. Cell Commun Signal 19(1): 27. PubMed ID: 33627133 Schaefer, K. N., Pronobis, M., Williams, C. E., Zhang, S., Bauer, L., Goldfarb, D., Yan, F., Major, M. B. and Peifer, M. (2020). Wnt Regulation: Exploring Axin-Disheveled interactions and defining mechanisms by which the SCF E3 ubiquitin ligase is recruited to the destruction complex. Mol Biol Cell: mbcE19110647. PubMed ID: 32129710 Bonello, T. T., Choi, W. and Peifer, M. (2019). Scribble and Discs-large direct initial assembly and positioning of adherens junctions during the establishment of apical-basal polarity. Development 146(22). PubMed ID: 31628110 Spracklen, A. J., Thornton-Kolbe, E. M., Bonner, A. N., Florea, A., Compton, P. J., Fernandez-Gonzalez, R. and Peifer, M. (2019). The Crk adapter protein is essential for Drosophila embryogenesis, where it regulates multiple actin-dependent morphogenic events. Mol Biol Cell: mbcE19050302. PubMed ID: 31318326 Manning, L. A., Perez-Vale, K. Z., Schaefer, K. N., Sewell, M. T. and Peifer, M. (2019). The Drosophila Afadin and ZO-1 homologs Canoe and Polychaetoid act in parallel to maintain epithelial integrity when challenged by adherens junction remodeling. Mol Biol Cell: mbcE19040209. PubMed ID: 31188739 Poulton, J. S., McKay, D. J. and Peifer, M. (2019). Centrosome loss triggers a transcriptional program to counter apoptosis-induced oxidative stress. Genetics. PubMed ID: 30867197 Bonello, T. T., Vale, K. Z., Sumigray, K. D. and Peifer, M. (2018). Rap1 acts via multiple mechanisms to position Canoe and adherens junctions and mediate apical-basal polarity establishment. Development 145(2). PubMed ID: 29361565 Poulton, J.S., Cuningham, J.C. and Peifer, M. (2017). Centrosome and spindle assembly checkpoint loss leads to neural apoptosis and reduced brain size. J Cell Biol 216: 1255-1265. PubMed ID: 28351851 Rogers, E.M, Spracklen, A.J., Bilancia, C.G., Sumigray, K.D., Allred, S.C., Nowotarski, S.H., Schaefer, K.N., Ritchie, B.J. and Peifer, M. (2016). Abelson kinase acts as a robust, multifunctional scaffold in regulating embryonic morphogenesis. Mol Biol Cell [Epub ahead of print]. PubMed ID: 27385341 Lerit, D.A., Jordan, H.A., Poulton, J.S., Fagerstrom, C.J., Galletta, B.J., Peifer, M. and Rusan, N.M. (2015). Interphase centrosome organization by the PLP-Cnn scaffold is required for centrosome function. J Cell Biol 210: 79-97. PubMed ID: 26150390 Jia Ng, S. S., Zheng, R. T., Osman, I. and Pek, J. W. (2018). Generation of Drosophila sisRNAs by Independent Transcription from Cognate Introns. iScience 4: 68-75. PubMed ID: 30240754 Osman, I. and Pek, J. W. (2018). A sisRNA/miRNA Axis Prevents Loss of Germline Stem Cells during Starvation in Drosophila. Stem Cell Reports 11(1): 4-12. PubMed ID: 30008327 Ng, A. Y. E., Peralta, K. R. G. and Pek, J. W. (2018). Germline Stem Cell Heterogeneity Supports Homeostasis in Drosophila. Stem Cell Reports 11(1): 13-21. PubMed ID: 29887366 Zoranovic, T., Manent, J., Willoughby, L., Matos de Simoes, R., La Marca, J. E., Golenkina, S., Cuiping, X., Gruber, S., Angjeli, B., Kanitz, E. E., Cronin, S. J. F., Neely, G. G., Wernitznig, A., Humbert, P. O., Simpson, K. J., Mitsiades, C. S., Richardson, H. E. and Penninger, J. M. (2018). A genome-wide Drosophila epithelial tumorigenesis screen identifies Tetraspanin 29Fb as an evolutionarily conserved suppressor of Ras-driven cancer. PLoS Genet 14(10): e1007688. PubMed ID: 30325918 Nagy, V., Cole, T., Van Campenhout, C., Khoung, T. M., Leung, C., Vermeiren, S., Novatchkova, M., Wenzel, D., Cikes, D., Polyansky, A. A., Kozieradzki, I., Meixner, A., Bellefroid, E. J., Neely, G. G. and Penninger, J. M. (2015). The evolutionarily conserved transcription factor PRDM12 controls sensory neuron development and pain perception. Cell Cycle: 0. PubMed ID: 25891934 Neely, G. G., et al. (2012). Construction of a global pain systems network highlights phospholipid signaling as a regulator of heat nociception. PLoS Genet 8: e1003071. PubMed ID: 23236288 Neely, G. G., Keene, A. C., Duchek, P., Chang, E. C., Wang, Q. P., Aksoy, Y. A., Rosenzweig, M., Costigan, M., Woolf, C. J., Garrity, P. A. and Penninger, J. M. (2011). TrpA1 regulates thermal nociception in Drosophila. PLoS One 6: e24343. PubMed ID: 21909389 Neely, G. G., et al. (2010). A genome-wide Drosophila screen for heat nociception identifies alpha2delta3 as an evolutionarily conserved pain gene. Cell 143: 628-638. PubMed ID: 21074052 Keais, G. L., Hanson, M. A., Gowen, B. E. and Perlman, S. J. (2017). X chromosome drive in a widespread Palearctic woodland fly, Drosophila testacea. J Evol Biol. PubMed ID: 28402000 Hamilton, P. T., Peng, F., Boulanger, M. J. and Perlman, S. J. (2015). A ribosome-inactivating protein in a Drosophila defensive symbiont. Proc Natl Acad Sci U S A. PubMed ID: 26712000 Hamilton, P. T., Leong, J. S., Koop, B. F. and Perlman, S. J. (2013). Transcriptional Responses in a Drosophila Defensive Symbiosis. Mol Ecol. PubMed ID: 24274471 Haselkorn, T. S., Cockburn, S. N., Hamilton, P. T., Perlman, S. J. and Jaenike, J. (2013). Infectious adaptation: potential host range of a defensive endosymbiont in Drosophila. Evolution 67: 934-945. PubMed ID: 23550746 Cockburn, S. N., Haselkorn, T. S., Hamilton, P. T., Landzberg, E., Jaenike, J. and Perlman, S. J. (2013). Dynamics of the continent-wide spread of a Drosophila defensive symbiont. Ecol Lett 16: 609-616. PubMed ID: 23517577 Gibert, J. M., Mouchel-Vielh, E. and Peronnet, F. (2018). Pigmentation pattern and developmental constraints: flight muscle attachment sites delimit the thoracic trident of Drosophila melanogaster. Sci Rep 8(1): 5328. PubMed ID: 29593305 Gibert, J. M., Blanco, J., Dolezal, M., Nolte, V., Peronnet, F. and Schlotterer, C. (2017). Strong epistatic and additive effects of linked candidate SNPs for Drosophila pigmentation have implications for analysis of genome-wide association studies results. Genome Biol 18(1): 126. PubMed ID: 28673357 Gibert, J. M., Mouchel-Vielh, E. and Peronnet, F. (2017). Modulation of yellow expression contributes to thermal plasticity of female abdominal pigmentation in Drosophila melanogaster. Sci Rep 7: 43370. PubMed ID: 28230190 Gibert, J. M., Mouchel-Vielh, E., De Castro, S. and Peronnet, F. (2016). Phenotypic Plasticity through Transcriptional Regulation of the Evolutionary Hotspot Gene tan in Drosophila melanogaster. PLoS Genet 12: e1006218. PubMed ID: 27508387 Dupont, C. A., Dardalhon-Cumenal, D., Kyba, M., Brock, H. W., Randsholt, N. B. and Peronnet, F. (2015). Drosophila Cyclin G and epigenetic maintenance of gene expression during development. Epigenetics Chromatin 8: 18. PubMed ID: 25995770 Rougeot, J., Renard, M., Randsholt, N. B., Peronnet, F. and Mouchel-Vielh, E. (2013). The elongin complex antagonizes the chromatin factor Corto for vein versus intervein cell identity in Drosophila wings. PLoS One 8: e77592. PubMed ID: 24204884 Debat, V. and Peronnet, F. (2013). Asymmetric flies: the control of developmental noise in Drosophila. Fly (Austin) 7: 70-77. PubMed ID: 23519089 Debat, V., Bloyer, S., Faradji, F., Gidaszewski, N., Navarro, N., Orozco-Terwengel, P., Ribeiro, V., Schlotterer, C., Deutsch, J. S. and Peronnet, F. (2011). Developmental stability: a major role for cyclin G in drosophila melanogaster. PLoS Genet 7: e1002314. PubMed ID: 21998598 Liu, Y., Li, J. S. S., Rodiger, J., Comjean, A., Attrill, H., Antonazzo, G., Brown, N. H., Hu, Y. and Perrimon, N. (2022). FlyPhoneDB: an integrated web-based resource for cell-cell communication prediction in Drosophila. Genetics 220(3). PubMed ID: 35100387 Zhao, H., Shi, L., Li, Z., Kong, R., Ren, X., Ma, R., Jia, L., Ma, M., Lu, S., Xu, R., Binari, R., Wang, J. H., Dong, M. Q., Perrimon, N. and Li, Z. (2022). The Yun/Prohibitin complex regulates adult Drosophila intestinal stem cell proliferation through the transcription factor E2F1. Proc Natl Acad Sci U S A 119(6). PubMed ID: 35115400 Kanca, O., Zirin, J., Hu, Y., Tepe, B., Dutta, D., Lin, W. W., Ma, L., Ge, M., Zuo, Z., Liu, L. P., Levis, R. W., Perrimon, N. and Bellen, H. J. (2022). An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination. Elife 11. PubMed ID: 35723254 Jouandin, P., Marelja, Z., Shih, Y. H., Parkhitko, A. A., Dambowsky, M., Asara, J. M., Nemazanyy, I., Dibble, C. C., Simons, M. and Perrimon, N. (2022). Lysosomal cystine mobilization shapes the response of TORC1 and tissue growth to fasting. Science 375(6582): eabc4203. PubMed ID: 35175796 Xu, J., Kim, A. R., Cheloha, R. W., Fischer, F. A., Li, J. S. S., Feng, Y., Stoneburner, E., Binari, R., Mohr, S. E., Zirin, J., Ploegh, H. L. and Perrimon, N. (2022). Protein visualization and manipulation in Drosophila through the use of epitope tags recognized by nanobodies. Elife 11. PubMed ID: 35076390 Parkhitko, A. A., Wang, L., Filine, E., Jouandin, P., Leshchiner, D., Binari, R., Asara, J. M., Rabinowitz, J. D. and Perrimon, N. (2021). A genetic model of methionine restriction extends Drosophila health- and lifespan. Proc Natl Acad Sci U S A 118(40). PubMed ID: 34588310 Ding, G., Xiang, X., Hu, Y., Xiao, G., Chen, Y., Binari, R., Comjean, A., Li, J., Rushworth, E., Fu, Z., Mohr, S. E., Perrimon, N. and Song, W. (2021). Coordination of tumor growth and host wasting by tumor-derived Upd3. Cell Rep 36(7): 109553. PubMed ID: 34407411 Droujinine, I. A., Meyer, A. S., Wang, D., Udeshi, N. D., Hu, Y., Rocco, D., McMahon, J. A., Yang, R., Guo, J., Mu, L., Carey, D. K., Svinkina, T., Zeng, R., Branon, T., Tabatabai, A., Bosch, J. A., Asara, J. M., Ting, A. Y., Carr, S. A., McMahon, A. P. and Perrimon, N. (2021). Proteomics of protein trafficking by in vivo tissue-specific labeling. Nat Commun 12(1): 2382. PubMed ID: 33888706 Tang, H. W., Weng, J. H., Lee, W. X., Hu, Y., Gu, L., Cho, S., Lee, G., Binari, R., Li, C., Cheng, M. E., Kim, A. R., Xu, J., Shen, Z., Xu, C., Asara, J. M., Blenis, J. and Perrimon, N. (2021). mTORC1-chaperonin CCT signaling regulates m(6)A RNA methylation to suppress autophagy. Proc Natl Acad Sci U S A 118(10). PubMed ID: 33649236 Newman, C. E., Toxopeus, J., Udaka, H., Ahn, S., Martynowicz, D. M., Graether, S. P., Sinclair, B. J. and Percival-Smith, A. (2017). CRISPR-induced null alleles show that Frost protects Drosophila melanogaster reproduction after cold exposure. J Exp Biol 220(Pt 18): 3344-3354. PubMed ID: 28705828 Percival-Smith, A. (2016). Non-specificity of transcription factor function in Drosophila melanogaster. Dev Genes Evol [Epub ahead of print]. PubMed ID: 27848019 Sivanantharajah, L. and Percival-Smith, A. (2015). Differential pleiotropy and HOX functional organization. Dev Biol 398: 1-10. PubMed ID: 25448696 Sivanantharajah, L. and Percival-Smith, A. (2014). Acquisition of a Leucine Zipper Motif as a Mechanism of Antimorphy for an Allele of the Drosophila Hox Gene Sex combs reduced. G3 (Bethesda). PubMed ID: 24622333 Kanca, O., Caussinus, E., Denes, A. S., Percival-Smith, A. and Affolter, M. (2014). Raeppli: a whole-tissue labeling tool for live imaging of Drosophila development. Development 141: 472-480. PubMed ID: 24335257 Percival-Smith, A., Sivanantharajah, L., Pelling, J. J. and Teft, W. A. (2013). Developmental competence and the induction of ectopic proboscises in Drosophila melanogaster. Dev Genes Evol 223: 375-387. PubMed ID: 24121940 Udaka, H., Percival-Smith, A. and Sinclair, B. J. (2013). Increased abundance of Frost mRNA during recovery from cold stress is not essential for cold tolerance in adult Drosophila melanogaster. Insect Mol Biol 22: 541-550. PubMed ID: 23901849 Eusebio, N., Tavares, L. and Pereira, P. S. (2018). CtBP represses Dpp-dependent Mad activation during Drosophila eye development. Dev Biol. PubMed ID: 30031756 Tavares, L., Correia, A., Santos, M. A., Relvas, J. B. and Pereira, P. S. (2017). dMyc is required in retinal progenitors to prevent JNK-mediated retinal glial activation. PLoS Genet 13(3): e1006647. PubMed ID: 28267791 Martins, T., Eusebio, N., Correia, A., Marinho, J., Casares, F. and Pereira, P. S. (2017). TGFbeta/Activin signalling is required for ribosome biogenesis and cell growth in Drosophila salivary glands. Open Biol 7(1). PubMed ID: 28123053 Tavares, L., Pereira, E., Correia, A., Santos, M. A., Amaral, N., Martins, T., Relvas, J. B. and Pereira, P. S. (2015). Drosophila PS2 and PS3 integrins play distinct roles in retinal photoreceptors-glia interactions. Glia 63(7): 1155-1165. PubMed ID: 25731761 Somers, J., Luong, H. N., Mitchell, J., Batterham, P. and Perry, T. (2017). Pleiotropic Effects of Loss of the Dalpha1 Subunit in Drosophila melanogaster: Implications for Insecticide Resistance. Genetics 205(1): 263-271. PubMed ID: 28049707 Christesen, D., Yang, Y. T., Somers, J., Robin, C., Sztal, T., Batterham, P. and Perry, T. (2016). Transcriptome Analysis of Drosophila melanogaster Third Instar Larval Ring Glands Points to Novel Functions and Uncovers a Cytochrome p450 Required for Development. G3 (Bethesda). PubMed ID: 27974438 Remnant, E. J., Williams, A., Lumb, C., Yang, Y. T., Chan, J., Duchene, S., Daborn, P. J., Batterham, P. and Perry, T. (2016). Evolution, Expression, and Function of Nonneuronal Ligand-Gated Chloride Channels in Drosophila melanogaster. G3 (Bethesda) 6(7): 2003-2012. PubMed ID: 27172217 Garud, N. R., Messer, P. W. and Petrov, D. A. (2021). Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data. PLoS Genet 17(2): e1009373. PubMed ID: 33635910 Machado, H. E., Lawrie, D. S. and Petrov, D. A. (2019). Pervasive strong selection at the level of codon usage bias in Drosophila melanogaster. Genetics. PubMed ID: 31871131 Zhao, X., Bergland, A. O., Behrman, E. L., Gregory, B. D., Petrov, D. A. and Schmidt, P. S. (2015). Global transcriptional profiling of diapause and climatic adaptation in Drosophila melanogaster. Mol Biol Evol [Epub ahead of print]. PubMed ID: 26568616 Bergland, A. O., Tobler, R., Gonzalez, J., Schmidt, P. and Petrov, D. (2015). Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster. Mol Ecol [Epub ahead of print]. PubMed ID: 26547394 Garud, N. R., Messer, P. W., Buzbas, E. O. and Petrov, D. A. (2015). Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. PLoS Genet 11: e1005004. PubMed ID: 25706129 Bergland, A. O., Behrman, E. L., O'Brien, K. R., Schmidt, P. S. and Petrov, D. A. (2014). Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila. PLoS Genet 10: e1004775. PubMed ID: 25375361 Barron, M. G., Fiston-Lavier, A. S., Petrov, D. A. and Gonzalez, J. (2014). Population genomics of transposable elements in Drosophila. Annu Rev Genet. PubMed ID: 25292358 Staubach, F., Baines, J. F., Kunzel, S., Bik, E. M. and Petrov, D. A. (2013). Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment. PLoS One 8: e70749. PubMed ID: 23967097 Lawrie, D. S., Messer, P. W., Hershberg, R. and Petrov, D. A. (2013). Strong Purifying Selection at Synonymous Sites in D. melanogaster. PLoS Genet 9: e1003527. PubMed ID: 23737754 Zhu, Y., Bergland, A. O., Gonzalez, J. and Petrov, D. A. (2012). Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster. PLoS One 7: e41901. PubMed ID: 22848651 Reimels, T. A. and Pfleger, C. M. (2015). Drosophila Rabex-5 restricts Notch activity in hematopoietic cells and maintains hematopoietic homeostasis. J Cell Sci [Epub ahead of print]. PubMed ID: 26567216 Ilanges, A., Jahanshahi, M., Balobin, D. M. and Pfleger, C. M. (2013). Alcohol interacts with genetic alteration of the hippo tumor suppressor pathway to modulate tissue growth in Drosophila. PLoS One 8: e78880. PubMed ID: 24205337 Liu, H. Y., Pfleger, C. M. (2013) Mutation in e1, the ubiquitin activating enzyme, reduces Drosophila lifespan and results in motor impairment. PLoS One 8: e32835. PubMed ID: 23382794 Pfleger, C. M., Wang, J., Friedman, L., Vittorino, R., Conley, L. M., Ho, L., Fivecoat, H. C. and Pasinetti, G. M. (2010). Grape-seed polyphenolic extract improves the eye phenotype in a Drosophila model of tauopathy. Int J Alzheimers Dis 2010. PubMed ID: 20871666 Yan, H., Jahanshahi, M., Horvath, E. A., Liu, H. Y. and Pfleger, C. M. (2010). Rabex-5 ubiquitin ligase activity restricts Ras signaling to establish pathway homeostasis in Drosophila. Curr Biol 20: 1378-1382. PubMed ID: 20655224 Tsai, Y.C., Grimm, S., Chao, J.L., Wang, S.C., Hofmeyer, K., Shen, J., Eichinger, F., Michalopoulou, T., Yao, C.K., Chang, C.H., Lin, S.H., Sun, Y.H. and Pflugfelder, G.O. (2015). Optomotor-blind negatively regulates Drosophila eye development by blocking Jak/STAT signaling. PLoS One 10: e0120236. PubMed ID: 25781970 Shen, J., Lu, J., Sui, L., Wang, D., Yin, M., Hoffmann, I., Legler, A. and Pflugfelder, G. O. (2014). The orthologous Tbx transcription factors Omb and TBX2 induce epithelial cell migration and extrusion in vivo without involvement of matrix metalloproteinases. Oncotarget. PubMed ID: 25344916 Sen, A., Grimm, S., Hofmeyer, K. and Pflugfelder, G. O. (2014). Optomotor-blind in the development of the Drosophila HS and VS lobula plate tangential cells. J Neurogenet: 1-49. PubMed ID: 24912380 Zhang, X., Luo, D., Pflugfelder, G. O. and Shen, J. (2013). Dpp signaling inhibits proliferation in the Drosophila wing by Omb-dependent regional control of bantam. Development 140: 2917-2922. PubMed ID: 23821035 Mayer, L. R., Diegelmann, S., Abassi, Y., Eichinger, F., Pflugfelder, G. O. (2013) Enhancer trap infidelity in Drosophila optomotor-blind. Fly (Austin) 7. PubMed ID: 23519069 Sui, L., Pflugfelder, G. O. and Shen, J. (2012). The Dorsocross T-box transcription factors promote tissue morphogenesis in the Drosophila wing imaginal disc. Development 139: 2773-2782. PubMed ID: 22782723 Shen, J., Dahmann, C. and Pflugfelder, G. O. (2010). Spatial discontinuity of optomotor-blind expression in the Drosophila wing imaginal disc disrupts epithelial architecture and promotes cell sorting. BMC Dev Biol 10: 23. PubMed ID: 20178599 Sen, A., Gadomski, C., Balles, J., Abassi, Y., Dorner, C. and Pflugfelder, G. O. (2010). Null mutations in Drosophila Optomotor-blind affect T-domain residues conserved in all Tbx proteins. Mol Genet Genomics 283: 147-156. PubMed ID: 20033428 Fuller, Z. L., Koury, S. A., Phadnis, N. and Schaeffer, S. W. (2019). How chromosomal rearrangements shape adaptation and speciation: Case studies in Drosophila pseudoobscura and its sibling species Drosophila persimilis. Mol Ecol 28(6): 1283-1301. PubMed ID: 30402909 Phadnis, N., Baker, E. P., Cooper, J. C., Frizzell, K. A., Hsieh, E., de la Cruz, A. F., Shendure, J., Kitzman, J. O. and Malik, H. S. (2015). An essential cell cycle regulation gene causes hybrid inviability in Drosophila. Science 350(6267): 1552-1555. PubMed ID: 26680200 Casale, A. M., Cappucci, U., Fanti, L. and Piacentini, L. (2019). Heterochromatin protein 1 (HP1) is intrinsically required for post-transcriptional regulation of Drosophila Germline Stem Cell (GSC) maintenance. Sci Rep 9(1): 4372. PubMed ID: 30867469 Laneve, P., Piacentini, L., Casale, A. M., Capauto, D., Gioia, U., Cappucci, U., Di Carlo, V., Bozzoni, I., Di Micco, P., Morea, V., Di Franco, C. A. and Caffarelli, E. (2017). Drosophila CG3303 is an essential endoribonuclease linked to TDP-43-mediated neurodegeneration. Sci Rep 7: 41559. PubMed ID: 28139767 Caizzi, R., Moschetti, R., Piacentini, L., Fanti, L., Marsano, R. M. and Dimitri, P. (2016). Comparative Genomic Analyses Provide New Insights into the Evolutionary Dynamics of Heterochromatin in Drosophila. PLoS Genet 12(8): e1006212. PubMed ID: 27513559 Nunes de Almeida, F., Walther, R. F., Presse, M. T., Vlassaks, E. and Pichaud, F. (2019). Cdc42 defines apical identity and regulates epithelial morphogenesis by promoting apical recruitment of Par6-aPKC and Crumbs. Development 146(15). PubMed ID: 31405903 Walther, R. F., Burki, M., Pinal, N., Rogerson, C. and Pichaud, F. (2018). Rap1, canoe and Mbt cooperate with Bazooka to promote zonula adherens assembly in the fly photoreceptor. J Cell Sci. PubMed ID: 29507112 Pichaud, F. (2013). Transcriptional regulation of tissue organization and cell morphogenesis: the fly retina as a case study. Dev Biol. PubMed ID: 24099926 Fichelson, P., Brigui, A. and Pichaud, F. (2012). Orthodenticle and Kruppel homolog 1 regulate Drosophila photoreceptor maturation. Proc Natl Acad Sci U S A 109: 7893-7898. PubMed ID: 22547825 Pinal, N. and Pichaud, F. (2011). Dynamin- and Rab5-dependent endocytosis is required to prevent Drosophila photoreceptor degeneration. J Cell Sci 124: 1564-1570. PubMed ID: 21486953 Cormier, R. J., Strang, R., Menail, H., Touaibia, M. and Pichaud, N. (2021). Systemic and mitochondrial effects of metabolic inflexibility induced by high fat diet in Drosophila melanogaster. Insect Biochem Mol Biol: 103556. PubMed ID: 33626368 Simard, C. J., Touaibia, M., Allain, E. P., Hebert-Chatelain, E. and Pichaud, N. (2020). Role of the Mitochondrial Pyruvate Carrier in the Occurrence of Metabolic Inflexibility in Drosophila melanogaster Exposed to Dietary Sucrose. Metabolites 10(10). PubMed ID: 33066485 Simard, C., Lebel, A., Allain, E. P., Touaibia, M., Hebert-Chatelain, E. and Pichaud, N. (2020). Metabolic Characterization and Consequences of Mitochondrial Pyruvate Carrier Deficiency in Drosophila melanogaster. Metabolites 10(9). PubMed ID: 32899962 Cheatle Jarvela, A. M., Trelstad, C. S. and Pick, L. (2021). Anterior-posterior patterning of segments in Anopheles stephensi offers insights into the transition from sequential to simultaneous segmentation in holometabolous insects. J Exp Zool B Mol Dev Evol. PubMed ID: 34734470 Cheatle Jarvela, A. M., Trelstad, C. S. and Pick, L. (2020). Regulatory gene function handoff allows essential gene loss in mosquitoes. Commun Biol 3(1): 540. PubMed ID: 32999445 Reding, K., Chen, M., Lu, Y., Cheatle Jarvela, A. M. and Pick, L. (2019). Shifting roles of Drosophila pair-rule gene orthologs: segmental expression and function in the milkweed bug Oncopeltus fasciatus. Development 146(17). PubMed ID: 31444220 Graham, P. L., Anderson, W. R., Brandt, E. A., Xiang, J. and Pick, L. (2019). Dynamic expression of Drosophila segmental cell surface-encoding genes and their pair-rule regulators. Dev Biol. PubMed ID: 30695684 Daffern, N., Chen, Z., Zhang, Y., Pick, L. and Radhakrishnan, I. (2018). Solution NMR studies of the ligand-binding domain of an orphan nuclear receptor reveals a dynamic helix in the ligand-binding pocket. Biochemistry. PubMed ID: 29547262 Field, A., Xiang, J., Anderson, W. R., Graham, P. and Pick, L. (2016). Activation of Ftz-F1-responsive genes through Ftz/Ftz-F1 dependent enhancers. PLoS One 11: e0163128. PubMed ID: 27723822 Xiang, J., Reding, K., Heffer, A. and Pick, L. (2017). Conservation and variation in pair-rule gene expression and function in the intermediate-germ beetle, Dermestes maculatus. Development 144(24):4625-4636. PubMed ID: 29084804 Li, C. R., Guo, D. and Pick, L. (2013). Independent signaling by Drosophila insulin receptor for axon guidance and growth. Front Physiol 4: 385. PubMed ID: 24478707 Heffer, A., Grubbs, N., Mahaffey, J. and Pick, L. (2013). The evolving role of the orphan nuclear receptor ftz-f1, a pair-rule segmentation gene. Evol Dev 15: 406-417. PubMed ID: 24261442 Crivat, G., Lizunov, V. A., Li, C. R., Stenkula, K. G., Zimmerberg, J., Cushman, S. W. and Pick, L. (2013). Insulin Stimulates Translocation of Human GLUT4 to the Membrane in Fat Bodies of Transgenic Drosophila melanogaster. PLoS One 8: e77953. PubMed ID: 24223128 Baumgartner, M. E., Dinan, M. P., Langton, P. F., Kucinski, I. and Piddini, E. (2021). Proteotoxic stress is a driver of the loser status and cell competition. Nat Cell Biol 23(2): 136-146. PubMed ID: 33495633 Kucinski, I., Dinan, M., Kolahgar, G. and Piddini, E. (2017). Chronic activation of JNK JAK/STAT and oxidative stress signalling causes the loser cell status. Nat Commun 8(1): 136. PubMed ID: 28743877 Wagstaff, L., Goschorska, M., Kozyrska, K., Duclos, G., Kucinski, I., Chessel, A., Hampton-O'Neil, L., Bradshaw, C. R., Allen, G. E., Rawlins, E. L., Silberzan, P., Carazo Salas, R. E. and Piddini, E. (2016). Mechanical cell competition kills cells via induction of lethal p53 levels. Nat Commun 7: 11373. PubMed ID: 27109213 Siegenthaler, D., Escribano, B., Brauler, V. and Pielage, J. (2019). Selective suppression and recall of long-term memories in Drosophila. PLoS Biol 17(8): e3000400. PubMed ID: 31454345 Schwarz, O., Bohra, A. A., Liu, X., Reichert, H., VijayRaghavan, K. and Pielage, J. (2017). Motor control of Drosophila feeding behavior. Elife 6 [Epub ahead of print]. PubMed ID: 28211791 Siegenthaler, D., Enneking, E. M., Moreno, E. and Pielage, J. (2015). L1CAM/Neuroglian controls the axon-axon interactions establishing layered and lobular mushroom body architecture. J Cell Biol 208: 1003-1018. PubMed ID: 25825519 Stephan, R., Goellner, B., Moreno, E., Frank, C. A., Hugenschmidt, T., Genoud, C., Aberle, H. and Pielage, J. (2015). Hierarchical microtubule organization controls axon caliber and transport and determines synaptic structure and stability. Dev Cell 33: 5-21. PubMed ID: 25800091 Bulat, V., Rast, M. and Pielage, J. (2014). Presynaptic CK2 promotes synapse organization and stability by targeting Ankyrin2. J Cell Biol 204: 77-94. PubMed ID: 24395637 Neal, S. J., Dolezal, D., Jusic, N. and Pignoni, F. (2019). Drosophila ML-DmD17-c3 cells respond robustly to Dpp and exhibit complex transcriptional feedback on BMP signaling components. BMC Dev Biol 19(1): 1. PubMed ID: 30669963 Zhou, Q., Yu, L., Friedrich, M. and Pignoni, F. (2016). Distinct regulation of atonal in a visual organ of Drosophila: organ-specific enhancer and lack of autoregulation in the larval eye. Dev Biol [Epub ahead of print]. PubMed ID: 27693434 Dolezal, D., Liu, Z., Zhou, Q. and Pignoni, F. (2015). Fly LMBR1/LIMR-type protein Lilipod promotes germ-line stem cell self-renewal by enhancing BMP signaling. Proc Natl Acad Sci U S A 112: 13928-13933. PubMed ID: 26512105 Zhang, T., Zhou, Q., Ogmundsdottir, M. H., Moller, K., Siddaway, R., Larue, L., Hsing, M., Kong, S. W., Goding, C., Palsson, A., Steingrimsson, E. and Pignoni, F. (2015). Mitf is a master regulator of the v-ATPase forming an Mitf/v-ATPase/TORC1 control module for cellular homeostasis. J Cell Sci. PubMed ID: 26092939 Zhou, Q., Zhang, T., Jemc, J. C., Chen, Y., Chen, R., Rebay, I. and Pignoni, F. (2013). Onset of atonal expression in Drosophila retinal progenitors involves redundant and synergistic contributions of Ey/Pax6 and So bindings sites within two distant enhancers. Dev Biol. PubMed ID: 24247006 Yu, L., Zhou, Q., Zhang, C. and Pignoni, F. (2012). Identification of Bombyx atonal and functional comparison with the Drosophila atonal proneural factor in the developing fly eye. Genesis 50: 393-403. PubMed ID: 21998072 Zhang, T., Zhou, Q. and Pignoni, F. (2011). Yki/YAP, Sd/TEAD and Hth/MEIS control tissue specification in the Drosophila eye disc epithelium. PLoS One 6: e22278. PubMed ID: 21811580 Liu, T., Starostina, E., Vijayan, V. and Pikielny, C. W. (2012). Two Drosophila DEG/ENaC channel subunits have distinct functions in gustatory neurons that activate male courtship. J Neurosci 32: 11879-11889. PubMed ID: 22915128 Starostina, E., Liu, T., Vijayan, V., Zheng, Z., Siwicki, K. K. and Pikielny, C. W. (2012). A Drosophila DEG/ENaC subunit functions specifically in gustatory neurons required for male courtship behavior. J Neurosci 32: 4665-4674. PubMed ID: 22457513 Liu, M. and Pile, L. A. (2016). The transcriptional corepressor SIN3 directly regulates genes involved in methionine catabolism and affects histone methylation, linking epigenetics and metabolism. J Biol Chem [Epub ahead of print]. PubMed ID: 28028175 Chaubal, A., Todi, S.V. and Pile, L.A. (2016). Inter-isoform-dependent regulation of the Drosophila master transcriptional regulator SIN3. J Biol Chem [Epub ahead of print]. PubMed ID: 27129248 Saha, N., Liu, M., Gajan, A. and Pile, L. A. (2016). Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms. BMC Genomics 17: 111. PubMed ID: 26872827 Gajan, A., Barnes, V. L., Liu, M., Saha, N. and Pile, L. A. (2016). The histone demethylase dKDM5/LID interacts with the SIN3 histone deacetylase complex and shares functional similarities with SIN3. Epigenetics Chromatin 9: 4. PubMed ID: 26848313 Liu, M., Barnes, V. L. and Pile, L. A. (2015). Disruption of Methionine Metabolism in Drosophila melanogaster Impacts Histone Methylation and Results in Loss of Viability. G3 (Bethesda) 6: 121-132. PubMed ID: 26546310 Holowatyj, A., Yang, Z. Q. and Pile, L. A. (2015). Histone lysine demethylases in Drosophila melanogaster. Fly (Austin) 9: 36-44. PubMed ID: 26207949 Tritto, P., Palumbo, V., Micale, L., Marzulli, M., Bozzetti, M. P., Specchia, V., Palumbo, G., Pimpinelli, S. and Berloco, M. (2015). Loss of Pol32 in Drosophila melanogaster causes chromosome instability and suppresses variegation. PLoS One 10(3): e0120859. PubMed ID: 25826374
Ma, C., Mirth, C. K., Hall, M. D. and Piper, M. D. W. (2020). Amino acid quality modifies the quantitative availability of protein for reproduction in Drosophila melanogaster. J Insect Physiol: 104050. PubMed ID: 32229142 Wu, Q., Yu, G., Cheng, X., Gao, Y., Fan, X., Yang, D., Xie, M., Wang, T., Piper, M. D. W. and Yang, M. (2020). Sexual dimorphism in the nutritional requirement for adult lifespan in Drosophila melanogaster. Aging Cell 19(3): e13120. PubMed ID: 32069521 Camilleri-Carter, T. L., Dowling, D. K., R, L. R. and Piper, M. D. W. (2019). Transgenerational Obesity and Healthy Aging in Drosophila. J Gerontol A Biol Sci Med Sci 74(10): 1582-1589. PubMed ID: 31231757 Lee, H. G., Kahn, T. G., Simcox, A., Schwartz, Y. B. and Pirrotta, V. (2015). Genome-wide activities of Polycomb complexes control pervasive transcription. Genome Res 25: 1170-1181. PubMed ID: 25986499 Li, H. B., Ohno, K., Gui, H. and Pirrotta, V. (2013). Insulators target active genes to transcription factories and polycomb-repressed genes to polycomb bodies. PLoS Genet 9: e1003436. PubMed ID: 23637616 Kahn, T. G., Stenberg, P., Pirrotta, V. and Schwartz, Y. B. (2014). Combinatorial Interactions Are Required for the Efficient Recruitment of Pho Repressive Complex (PhoRC) to Polycomb Response Elements. PLoS Genet 10: e1004495. PubMed ID: 25010632 Park, S. Y., Schwartz, Y. B., Kahn, T. G., Asker, D. and Pirrotta, V. (2012). Regulation of Polycomb group genes Psc and Su(z)2 in Drosophila melanogaster. Mech. Dev. 128(11-12): 536-47. PubMed ID: 22289633 Alekseyenko, A. A., et al. (2012). Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context. PLoS Genet. 8(4): e1002646. PubMed Citation: 22570616 Schwartz, Y. B., Kahn, T. G., Stenberg, P., Ohno, K., Bourgon, R. and Pirrotta, V. (2010). Alternative epigenetic chromatin states of polycomb target genes. PLoS Genet. 6(1): e1000805. PubMed ID: 20062800 Pischedda, A., Shahandeh, M. P. and Turner, T. L. (2020). The Loci of Behavioral Evolution: Evidence That Fas2 and tilB Underlie Differences in Pupation Site Choice Behavior between Drosophila melanogaster and D. simulans. Mol Biol Evol 37(3): 864-880. PubMed ID: 31774527 Shahandeh, M. P., Pischedda, A., Rodriguez, J. M. and Turner, T. L. (2020). The Genetics of Male Pheromone Preference Difference Between Drosophila melanogaster and Drosophila simulans. G3 (Bethesda) 10(1): 401-415. PubMed ID: 31748379 Shahandeh, M. P., Pischedda, A. and Turner, T. L. (2018). Male mate choice via cuticular hydrocarbon pheromones drives reproductive isolation between Drosophila species. Evolution 72(1): 123-135. PubMed ID: 29098691 Ala-Honkola, O., Manier, M. K., Lupold, S., Droge-Young, E. M., Collins, W. F., Belote, J. M. and Pitnick, S. (2013). No inbreeding depression in sperm storage ability or offspring viability in Drosophila melanogaster females. J Insect Physiol. PubMed ID: 24188987 Manier, M. K., Lupold, S., Belote, J. M., Starmer, W. T., Berben, K. S., Ala-Honkola, O., Collins, W. F. and Pitnick, S. (2013). Postcopulatory Sexual Selection Generates Speciation Phenotypes in Drosophila. Curr Biol. PubMed ID: 24076241 Ala-Honkola, O., Hosken, D. J., Manier, M. K., Lupold, S., Droge-Young, E. M., Berben, K. S., Collins, W. F., Belote, J. M. and Pitnick, S. (2013). Inbreeding reveals mode of past selection on male reproductive characters in Drosophila melanogaster. Ecol Evol 3: 2089-2102. PubMed ID: 23919154 Manier, M. K., Belote, J. M., Berben, K. S., Lupold, S., Ala-Honkola, O., Collins, W. F. and Pitnick, S. (2013). Rapid diversification of sperm precedence traits and processes among three sibling Drosophila species. Evolution 67: 2348-2362. PubMed ID: 23888856 Lupold, S., Pitnick, S., Berben, K. S., Blengini, C. S., Belote, J. M. and Manier, M. K. (2013). Female mediation of competitive fertilization success in Drosophila melanogaster. Proc Natl Acad Sci U S A. PubMed ID: 23757499 Belote, J. M., Lupold, S., Manier, M. K., Pitnick, S. (2013) Opening a window onto sperm competition. Mol Reprod Dev. PubMed ID: 23341262 Lupold, S., Manier, M. K., Berben, K. S., Smith, K. J., Daley, B. D., Buckley, S. H., Belote, J. M. and Pitnick, S. (2012). How multivariate ejaculate traits determine competitive fertilization success in Drosophila melanogaster. Curr Biol 22: 1667-1672. PubMed ID: 22840512 ouli, C. (2022). How Gut Microbes Nurture Intestinal Stem Cells: A Drosophila Perspective. Metabolites 12(2). PubMed ID: 35208243 Tamamouna, V., Rahman, M. M., Petersson, M., Charalambous, I., Kux, K., Mainor, H., Bolender, V., Isbilir, B., Edgar, B. A. and Pitsouli, C. (2021). Remodelling of oxygen-transporting tracheoles drives intestinal regeneration and tumorigenesis in Drosophila. Nat Cell Biol 23(5): 497-510. PubMed ID: 33972730 Tamamouna, V., Panagi, M., Theophanous, A., Demosthenous, M., Michail, M., Papadopoulou, M., Teloni, S., Pitsouli, C. and Apidianakis, Y. (2020). Evidence of two types of balance between stem cell mitosis and enterocyte nucleus growth in the Drosophila midgut. Development 147(11). PubMed ID: 32513656 Seong, K. M., Coates, B. S. and Pittendrigh, B. R. (2020). Post-transcriptional modulation of cytochrome P450s, Cyp6g1 and Cyp6g2, by miR-310s cluster is associated with DDT-resistant Drosophila melanogaster strain 91-R. Sci Rep 10(1): 14394. PubMed ID: 32873850 Abdu-Allah, G. A. M., Seong, K. M., Mittapalli, O., Ojo, J. A., Sun, W., Posos-Parra, O., Mota-Sanchez, D., Clark, J. M. and Pittendrigh, B. R. (2020). Dietary antioxidants impact DDT resistance in Drosophila melanogaster. PLoS One 15(8): e0237986. PubMed ID: 32841282 Huang, J., Sun, W., Seong, K. M., Mittapalli, O., Ojo, J., Coates, B., Paige, K. N., Clark, J. M. and Pittendrigh, B. R. (2020). Dietary antioxidant vitamin C influences the evolutionary path of insecticide resistance in Drosophila melanogaster. Pestic Biochem Physiol 168: 104631. PubMed ID: 32711765 Seong, K. M., Coates, B. S. and Pittendrigh, B. R. (2019). Cytochrome P450s Cyp4p1 and Cyp4p2 associated with the DDT tolerance in the Drosophila melanogaster strain 91-R. Pestic Biochem Physiol 159: 136-143. PubMed ID: 31400775 Seong, K. M., Sun, W., Clark, J. M. and Pittendrigh, B. R. (2016). Splice form variant and amino acid changes in MDR49 confers DDT resistance in transgenic Drosophila. Sci Rep 6: 23355. PubMed ID: 27003579 Sun, W., Valero, M. C., Seong, K. M., Steele, L. D., Huang, I. T., Lee, C. H., Clark, J. M., Qiu, X. and Pittendrigh, B. R. (2015). A glycine insertion in the Estrogen-Related Receptor (ERR) is associated with enhanced expression of three cytochrome P450 genes in transgenic Drosophila melanogaster. PLoS One 10: e0118779. PubMed ID: 25761142 Qiu, X., Sun, W., McDonnell, C. M., Li-Byarlay, H., Steele, L. D., Wu, J., Xie, J., Muir, W. M., Pittendrigh, B. R. (2012) Genome-wide analysis of genes associated with moderate and high DDT resistance in Drosophila melanogaster. Pest Manag Sci. PubMed ID: 23371854 Walters, K. R., Jr., Rupassara, S. I., Markelz, R. J., Leakey, A. D., Muir, W. M. and Pittendrigh, B. R. (2012). Methamphetamine causes anorexia in Drosophila melanogaster, exhausting metabolic reserves and contributing to mortality. J Toxicol Sci 37: 773-790. PubMed ID: 22863857 McDonnell, C. M., King, D., Comeron, J. M., Li, H., Sun, W., Berenbaum, M. R., Schuler, M. A. and Pittendrigh, B. R. (2012). Evolutionary toxicogenomics: diversification of the Cyp12d1 and Cyp12d3 genes in Drosophila species. J Mol Evol 74: 281-296. PubMed ID: 22811321 Scheffer, L. K., Xu, C. S., Januszewski, M., Lu, Z., Takemura, S. Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitlin-Shepard, J., Berg, S., Clements, J., Hubbard, P. M., Katz, W. T., Umayam, L., Zhao, T., Ackerman, D., Blakely, T., Bogovic, J., Dolafi, T., Kainmueller, D., Kawase, T., Khairy, K. A., Leavitt, L., Li, P. H., Lindsey, L., Neubarth, N., Olbris, D. J., Otsuna, H., Trautman, E. T., Ito, M., Bates, A. S., Goldammer, J., Wolff, T., Svirskas, R., Schlegel, P., Neace, E., Knecht, C. J., Alvarado, C. X., Bailey, D. A., Ballinger, S., Borycz, J. A., Canino, B. S., Cheatham, N., Cook, M., Dreher, M., Duclos, O., Eubanks, B., Fairbanks, K., Finley, S., Forknall, N., Francis, A., Hopkins, G. P., Joyce, E. M., Kim, S., Kirk, N. A., Kovalyak, J., Lauchie, S., Lohff, A., Maldonado, C., Manley, E. A., McLin, S., Mooney, C., Ndama, M., Ogundeyi, O., Okeoma, N., Ordish, C., Padilla, N., Patrick, C. M., Paterson, T., Phillips, E. E., Phillips, E. M., Rampally, N., Ribeiro, C., Robertson, M. K., Rymer, J. T., Ryan, S. M., Sammons, M., Scott, A. K., Scott, A. L., Shinomiya, A., Smith, C., Smith, K., Smith, N. L., Sobeski, M. A., Suleiman, A., Swift, J., Takemura, S., Talebi, I., Tarnogorska, D., Tenshaw, E., Tokhi, T., Walsh, J. J., Yang, T., Horne, J. A., Li, F., Parekh, R., Rivlin, P. K., Jayaraman, V., Costa, M., Jefferis, G. S., Ito, K., Saalfeld, S., George, R., Meinertzhagen, I., Rubin, G. M., Hess, H. F., Jain, V. and Plaza, S. M. (2020). A connectome and analysis of the adult Drosophila central brain. Elife 9. PubMed ID: 32880371 Zanet, J., Benrabah, E., Li, T., Pelissier-Monier, A., Chanut-Delalande, H., Ronsin, B., Bellen, H. J., Payre, F. and Plaza, S. (2015). Pri sORF peptides induce selective proteasome-mediated protein processing. Science 349: 1356-1358. PubMed ID: 26383956 Chanut-Delalande, H., Hashimoto, Y., Pelissier-Monier, A., Spokony, R., Dib, A., Kondo, T., Bohere, J., Niimi, K., Latapie, Y., Inagaki, S., Dubois, L., Valenti, P., Polesello, C., Kobayashi, S., Moussian, B., White, K. P., Plaza, S., Kageyama, Y. and Payre, F. (2014). Pri peptides are mediators of ecdysone for the temporal control of development. Nat Cell Biol 16: 1035-1044. PubMed ID: 25344753 Menoret, D., Santolini, M., Fernandes, I., Spokony, R., Zanet, J., Gonzalez, I., Latapie, Y., Ferrer, P., Rouault, H., White, K. P., Besse, P., Hakim, V., Aerts, S., Payre, F. and Plaza, S. (2013). Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Genome Biol 14: R86. PubMed ID: 23972280 Zanet, J., Payre, F. and Plaza, S. (2009). Fascin for cell migration in Drosophila. Fly (Austin) 3: 281-282. PubMed ID: 19901519 Sanial, M., Becam, I., Hofmann, L., Behague, J., Arguelles, C., Gourhand, V., Bruzzone, L., Holmgren, R. A. and Plessis, A. (2017). Dose dependent transduction of Hedgehog relies on phosphorylation-based feedback between the GPCR Smoothened and the kinase Fused. Development. PubMed ID: 28360132 Brigui, A., Hofmann, L., Arguelles, C., Sanial, M., Holmgren, R. A. and Plessis, A. (2015). Control of the dynamics and homeostasis of the Drosophila Hedgehog receptor Patched by two C2-WW-HECT-E3 Ubiquitin ligases. Open Biol 5. PubMed ID: 26446620 Yanai, H., Yoshioka, Y., Yoshida, H., Nakao, Y., Plessis, A. and Yamaguchi, M. (2014). Drosophila myeloid leukemia factor acts with DREF to activate the JNK signaling pathway. Oncogenesis 3: e98. PubMed ID: 24752236 Marchal, C., Vinatier, G., Sanial, M., Plessis, A., Pret, A. M., Limbourg-Bouchon, B., Theodore, L. and Netter, S. (2012). The HIV-1 Vpu protein induces apoptosis in Drosophila via activation of JNK signaling. PLoS One 7: e34310. PubMed ID: 22479597 Chakraborty, T. S., Gendron, C. M., Lyu, Y., Munneke, A. S., DeMarco, M. N., Hoisington, Z. W. and Pletcher, S. D. (2019). Sensory perception of dead conspecifics induces aversive cues and modulates lifespan through serotonin in Drosophila. Nat Commun 10(1): 2365. PubMed ID: 31147540 Gendron, C. M. and Pletcher, S. D. (2017). MicroRNAs mir-184 and let-7 alter Drosophila metabolism and longevity. Aging Cell 16(6): 1434-1438. PubMed ID: 28963741 Fedina, T. Y., Arbuthnott, D., Rundle, H. D., Promislow, D. E. L. and Pletcher, S. D. (2017). Tissue-specific insulin signaling mediates female sexual attractiveness. PLoS Genet 13(8): e1006935. PubMed ID: 28817572 Lee, J. E., Rayyan, M., Liao, A., Edery, I. and Pletcher, S. D. (2017). Acute dietary restriction acts via TOR, PP2A, and Myc signaling to boost innate immunity in Drosophila. Cell Rep 20(2): 479-490. PubMed ID: 28700947 Harvanek, Z. M., Lyu, Y., Gendron, C. M., Johnson, J. C., Kondo, S., Promislow, D. E. L. and Pletcher, S. D. (2017). Perceptive costs of reproduction drive ageing and physiology in male Drosophila. Nat Ecol Evol 1(6): 152. PubMed ID: 28812624 Fedina, T. Y., Arbuthnott, D., Rundle, H. D., Promislow, D. E. L. and Pletcher, S. D. (2017). Tissue-specific insulin signaling mediates female sexual attractiveness. PLoS Genet 13(8): e1006935. PubMed ID: 28817572 Chung, B. Y., Ro, J., Hutter, S. A., Miller, K. M., Guduguntla, L. S., Kondo, S. and Pletcher, S. D. (2017). Drosophila Neuropeptide F signaling independently regulates feeding and sleep-wake behavior. Cell Rep 19(12): 2441-2450. PubMed ID: 28636933 Arbuthnott, D., Fedina, T.Y., Pletcher, S.D. and Promislow, D.E. (2017). Mate choice in fruit flies is rational and adaptive. Nat Commun 8: 13953. PubMed ID: 28094789 Harvanek, Z. M., Mourao, M. A., Schnell, S. and Pletcher, S. D. (2016). A computational approach to studying ageing at the individual level. Proc Biol Sci 283. PubMed ID: 26865300 Waterson, M. J., Chan, T. P. and Pletcher, S. D. (2015). Adaptive physiological response to perceived scarcity as a mechanism of sensory modulation of life span. J Gerontol A Biol Sci Med Sci. PubMed ID: 25878032 Pokrywka, N. J., Zhang, H. and Raley-Susman, K. (2014). Distinct roles for hu li tai shao and swallow in cytoskeletal organization during Drosophila oogenesis. Dev Dyn 243(7): 906-916. PubMed ID: 24677508 Pokrywka, N. J. (2013). Live imaging of GFP-labeled proteins in Drosophila oocytes. J Vis Exp(73). PubMed ID: 23567977 LeVasseur-Viens, H., Polak, M. and Moehring, A. J. (2015). No evidence for external genital morphology affecting cryptic female choice and reproductive isolation in Drosophila. Evolution 69(7): 1797-1807. PubMed ID: 25962316 Grieshop, K. and Polak, M. (2014). Evaluating the post-copulatory sexual selection hypothesis for genital evolution reveals evidence for pleiotropic harm exerted by the male genital spines of Drosophila ananassae. J Evol Biol 27(12): 2676-2686. PubMed ID: 25403358 Lange, J. D., Bastide, H., Lack, J. B. and Pool, J. E. (2021). A Population Genomic Assessment of Three Decades of Evolution in a Natural Drosophila Population. Mol Biol Evol. PubMed ID: 34971382 Huang, Y., Lack, J. B., Hoppel, G. T. and Pool, J. E. (2022). Gene regulatory evolution in cold-adapted fly populations neutralizes plasticity and may undermine genetic canalization. Genome Biol Evol. PubMed ID: 35380655 Sprengelmeyer, Q. D. and Pool, J. E. (2021). Ethanol resistance in Drosophila melanogaster has increased in parallel cold-adapted populations and shows a variable genetic architecture within and between populations. Ecol Evol 11(21): 15364-15376. PubMed ID: 34765183 Huang, Y., Lack, J. B., Hoppel, G. T. and Pool, J. E. (2021). Parallel and Population-specific Gene Regulatory Evolution in Cold-Adapted Fly Populations. Genetics. PubMed ID: 33989401 Sprengelmeyer, Q. D., Mansourian, S., Lange, J. D., Matute, D. R., Cooper, B. S., Jirle, E. V., Stensmyr, M. C. and Pool, J. E. (2019). Recurrent collection of Drosophila melanogaster from Wild african environments and genomic insights into species history. Mol Biol Evol. PubMed ID: 31730190 Lange, J. D. and Pool, J. E. (2018). Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila. Genome Biol Evol. PubMed ID: 30010915 Groth, B. R., Huang, Y., Monette, M. J. and Pool, J. E. (2018). Directional selection reduces developmental canalization against genetic and environmental perturbations in Drosophila wings. Evolution. PubMed ID: 29985527 Bastide, H., Lange, J. D., Lack, J. B., Yassin, A. and Pool, J. E. (2016). A Variable Genetic architecture of melanic evolution in Drosophila melanogaster. Genetics [Epub ahead of print]. PubMed ID: 27638419 Lack, J. B., Yassin, A., Sprengelmeyer, Q. D., Johanning, E. J., David, J. R. and Pool, J. E. (2016). Life history evolution and cellular mechanisms associated with increased size in high-altitude Drosophila. Ecol Evol 6: 5893-5906. PubMed ID: 27547363 Yassin, A., Debat, V., Bastide, H., Gidaszewski, N., David, J.R. and Pool, J.E. (2016). Recurrent specialization on a toxic fruit in an island Drosophila population. Proc Natl Acad Sci U S A [Epub ahead of print]. PubMed ID: 27044093 Yassin, A., Bastide, H., Chung, H., Veuille, M., David, J. R. and Pool, J. E. (2016). Ancient balancing selection at tan underlies female colour dimorphism in Drosophila erecta. Nat Commun 7: 10400. PubMed ID: 26778363 Lack, J. B., Monette, M. J., Johanning, E. J., Sprengelmeyer, Q. D. and Pool, J. E. (2016). Decanalization of wing development accompanied the evolution of large wings in high-altitude Drosophila. Proc Natl Acad Sci U S A [Epub ahead of print]. PubMed ID: 26755605 Poulton, J. S., McKay, D. J. and Peifer, M. (2019). Centrosome loss triggers a transcriptional program to counter apoptosis-induced oxidative stress. Genetics. PubMed ID: 30867197 Lerit, D.A., Jordan, H.A., Poulton, J.S., Fagerstrom, C.J., Galletta, B.J., Peifer, M. and Rusan, N.M. (2015). Interphase centrosome organization by the PLP-Cnn scaffold is required for centrosome function. J Cell Biol 210: 79-97. PubMed ID: 26150390 Miller, S. W., Movsesyan, A., Zhang, S., Fernandez, R. and Posakony, J. W. (2019). Evolutionary emergence of Hairless as a novel component of the Notch signaling pathway. Elife 8. PubMed ID: 31545167 Miller, S. W. and Posakony, J. W. (2018). Lateral inhibition: Two modes of non-autonomous negative autoregulation by neuralized. PLoS Genet 14(7): e1007528. PubMed ID: 30028887 Miller, S. W., Rebeiz, M., Atanasov, J. E. and Posakony, J. W. (2014). Neural precursor-specific expression of multiple Drosophila genes is driven by dual enhancer modules with overlapping function. Proc Natl Acad Sci U S A. PubMed ID: 25404315 Liu, F. and Posakony, J. W. (2014). An enhancer composed of interlocking submodules controls transcriptional autoregulation of suppressor of hairless. Dev Cell 29: 88-101. PubMed ID: 24735880 Liu, F., and Posakony, J. W. (2012). Role of architecture in the function and specificity of two Notch-regulated transcriptional enhancer modules. PLoS Genet. 8: e1002796. PubMed ID: 22792075 Rebeiz, M., Castro, B., Liu, F., Yue, F., and Posakony, J. W. (2012). Ancestral and conserved cis-regulatory architectures in developmental control genes. Dev. Biol. 362: 282-294. PubMed ID: 22185795 Rebeiz, M., Miller, S. W. and Posakony, J. W. (2011). Notch regulates numb: integration of conditional and autonomous cell fate specification. Development 138: 215-225. PubMed ID: 21148185 Reis, M., Wiegleb, G., Claude, J., Lata, R., Horchler, B., Ha, N. T., Reimer, C., Vieira, C. P., Vieira, J. and Posnien, N. (2020). Multiple loci linked to inversions are associated with eye size variation in species of the Drosophila virilis phylad. Sci Rep 10(1): 12832. PubMed ID: 32732947 Torres-Oliva, M., Schneider, J., Wiegleb, G., Kaufholz, F. and Posnien, N. (2018). Dynamic genome wide expression profiling of Drosophila head development reveals a novel role of Hunchback in retinal glia cell development and blood-brain barrier integrity. PLoS Genet 14(1): e1007180. PubMed ID: 29360820 Al Khatib, A., Siomava, N., Iannini, A., Posnien, N. and Casares, F. (2017). Specific expression and function of the Six3 optix in Drosophila serially homologous organs. Biol Open 6(8): 1155-1164. PubMed ID: 28642242 Siomava, N., Wimmer, E. A. and Posnien, N. (2016). Size relationships of different body parts in the three dipteran species Drosophila melanogaster, Ceratitis capitata and Musca domestica. Dev Genes Evol 226(3): 245-256. PubMed ID: 27116604 Maguire, S. E., Afify, A., Goff, L. A. and Potter, C. J. (2022). Odorant-receptor-mediated regulation of chemosensory gene expression in the malaria mosquito Anopheles gambiae. Cell Rep 38(10): 110494. PubMed ID: 35263579 Raji, J. I. and Potter, C. J. (2021). The number of neurons in Drosophila and mosquito brains. PLoS One 16(5): e0250381. PubMed ID: 33989293 Chin, S. G., Maguire, S. E., Huoviala, P., Jefferis, G. and Potter, C. J. (2018). Olfactory neurons and brain centers directing oviposition decisions in Drosophila. Cell Rep 24(6): 1667-1678. PubMed ID: 30089274 Lin, C. C., Riabinina, O. and Potter, C. J. (2016). Olfactory behaviors assayed by computer tracking of Drosophila in a four-quadrant olfactometer. J Vis Exp. PubMed ID: 27585032 Lin, C. C., Prokop-Prigge, K. A., Preti, G. and Potter, C. J. (2015). Food odors trigger males to deposit a pheromone that guides aggregation and female oviposition decisions. Elife 4. PubMed ID: 26422512 Gao, X. J., Riabinina, O., Li, J., Potter, C. J., Clandinin, T. R. and Luo, L. (2015). A transcriptional reporter of intracellular Ca(2+) in Drosophila. Nat Neurosci 18: 917-925. PubMed ID: 25961791 Diao, F., Ironfield, H., Luan, H., Diao, F., Shropshire, W. C., Ewer, J., Marr, E., Potter, C. J., Landgraf, M. and White, B. H. (2015). Plug-and-play genetic access to Drosophila cell types using exchangeable exon cassettes. Cell Rep 10: 1410-1421. PubMed ID: 25732830 Riabinina, O., Luginbuhl, D., Marr, E., Liu, S., Wu, M. N., Luo, L. and Potter, C. J. (2015). Improved and expanded Q-system reagents for genetic manipulations. Nat Methods. PubMed ID: 25581800 Ronderos, D. S., Lin, C. C., Potter, C. J. and Smith, D. P. (2014). Farnesol-detecting olfactory neurons in Drosophila. J Neurosci 34: 3959-3968. PubMed ID: 24623773 Basu, I., Bar, S., Prasad, M. and Datta, R. (2022). Adipose deficiency and aberrant autophagy in a Drosophila model of MPS VII is corrected by pharmacological stimulators of mTOR. Biochim Biophys Acta Mol Basis Dis 1868(7): 166399. PubMed ID: 35318126 Felix, M. and Prasad, M. (2022). Mapping Asymmetry in Collective Cell Migration: Lessons from Border Cells in Drosophila Oogenesis. Methods Mol Biol 2438: 483-494. PubMed ID: 35147959 Sharma, A., Halder, S., Felix, M., Nisaa, K., Deshpande, G. and Prasad, M. (2018). Insulin signaling modulates border cell movement in Drosophila oogenesis. Development 145(14). PubMed ID: 29950391 Geeta Arun, M., Agarwala, A., Syed, Z. A., Jigisha, Kashyap, M., Venkatesan, S., Chechi, T. S., Gupta, V. and Prasad, N. G. (2021). Experimental evolution reveals sex-specific dominance for surviving bacterial infection in laboratory populations of Drosophila melanogaster. Evol Lett 5(6): 657-671. PubMed ID: 34919096 Ahlawat, N., Geeta Arun, M., Maggu, K. and Prasad, N. G. (2021). Enemies make you stronger: Coevolution between fruit fly host and bacterial pathogen increases postinfection survivorship in the host. Ecol Evol 11(14): 9563-9574. PubMed ID: 34306643 Kapila, R., Kashyap, M., Gulati, A., Narasimhan, A., Poddar, S., Mukhopadhaya, A. and Prasad, N. G. (2021). Evolution of sex-specific heat stress tolerance and larval Hsp70 expression in populations of Drosophila melanogaster adapted to larval crowding. J Evol Biol. PubMed ID: 34197669 Kapila, R., Kashyap, M., Poddar, S., Gangwal, S. and Prasad, N. G. G. (2021). Evolution of pathogen-specific improved survivorship post-infection in populations of Drosophila melanogaster adapted to larval crowding. PLoS One 16(4): e0250055. PubMed ID: 33852596 Maggu, K., Ahlawat, N., Geeta Arun, M., Meena, A. and Prasad, N. G. (2020). Divergence of responses to variable socio-sexual environments in laboratory populations of Drosophila melanogaster evolving under altered operational sex ratios. Evolution. PubMed ID: 33319380 Syed, Z. A., Gupta, V., Arun, M. G., Dhiman, A., Nandy, B. and Prasad, N. G. (2020). Absence of reproduction-immunity trade-off in male Drosophila melanogaster evolving under differential sexual selection. BMC Evol Biol 20(1): 13. PubMed ID: 31992187 Gogna, N., Sharma, R., Gupta, V., Dorai, K. and Prasad, N. G. (2017). Evolution of the metabolome in response to selection for increased immunity in populations of Drosophila melanogaster. PLoS One 12(11): e0188089. PubMed ID: 29149207 Syed, Z. A., Chatterjee, M., Samant, M. A. and Prasad, N. G. (2017). Reproductive isolation through experimental manipulation of sexually antagonistic coevolution in Drosophila melanogaster. Sci Rep 7(1): 3330. PubMed ID: 28611437 Shenoi, V. N., Syed, è. A. and Prasad, N. G. (2015). Evolution of increased adult longevity in Drosophila melanogaster populations selected for adaptation to larval crowding. J Evol Biol [Epub ahead of print]. PubMed ID: 26575793 Singh, K., Kochar, E. and Prasad, N. G. (2015). Egg Viability, Mating Frequency and Male Mating Ability Evolve in Populations of Drosophila melanogaster Selected for Resistance to Cold Shock. PLoS One 10: e0129992. PubMed ID: 26065704 Nandy, B., Gupta, V., Udaykumar, N., Samant, M. A., Sen, S. and Prasad, N. G. (2014). Experimental evolution of female traits under different levels of intersexual conflict in Drosophila melanogaster. Evolution 68: 412-425. PubMed ID: 24117169 Hadjieconomou, D., King, G., Gaspar, P., Mineo, A., Blackie, L., Ameku, T., Studd, C., de Mendoza, A., Diao, F., White, B. H., Brown, A. E. X., Placais, P. Y., Preat, T. and Miguel-Aliaga, I. (2020). Enteric neurons increase maternal food intake during reproduction. Nature 587(7834): 455-459. PubMed ID: 33116314 Turrel, O., Rabah, Y., Placais, P. Y., Goguel, V. and Preat, T. (2020). Drosophila middle-term memory: Amnesiac is required for PKA activation in the mushroom bodies, a function modulated by Neprilysin 1. J Neurosci. PubMed ID: 32303647 Delestro, F., Scheunemann, L., Pedrazzani, M., Tchenio, P., Preat, T. and Genovesio, A. (2020). In vivo large-scale analysis of Drosophila neuronal calcium traces by automated tracking of single somata. Sci Rep 10(1): 7153. PubMed ID: 32346011 Silva, B., Niehage, C., Maglione, M., Hoflack, B., Sigrist, S. J., Wassmer, T., Pavlowsky, A. and Preat, T. (2020). Interactions between amyloid precursor protein-like (APPL) and MAGUK scaffolding proteins contribute to appetitive long-term memory in Drosophila melanogaster. J Neurogenet: 1-14. PubMed ID: 31965876 Scheunemann, L., Lampin-Saint-Amaux, A., Schor, J. and Preat, T. (2019). A sperm peptide enhances long-term memory in female Drosophila. Sci Adv 5(11): eaax3432. PubMed ID: 31799390 Hudry, B., de Goeij, E., Mineo, A., Gaspar, P., Hadjieconomou, D., Studd, C., Mokochinski, J. B., Kramer, H. B., Placais, P. Y., Preat, T. and Miguel-Aliaga, I. (2019). Sex Differences in intestinal carbohydrate metabolism promote food intake and sperm maturation. Cell 178(4): 901-918. PubMed ID: 31398343 Dolan, M. J., Belliart-Guerin, G., Bates, A. S., Frechter, S., Lampin-Saint-Amaux, A., Aso, Y., Roberts, R. J. V., Schlegel, P., Wong, A., Hammad, A., Bock, D., Rubin, G. M., Preat, T., Placais, P. Y. and Jefferis, G. (2018). Communication from learned to innate olfactory processing centers Is required for memory retrieval in Drosophila. Neuron. PubMed ID: 30244885 Pavlowsky, A., Schor, J., Placais, P. Y. and Preat, T. (2018). A GABAergic feedback shapes dopaminergic input on the Drosophila mushroom body to promote appetitive long-term memory. Curr Biol. Pubmed ID: 29779874 Scheunemann, L., Placais, P. Y., Dromard, Y., Schwarzel, M. and Preat, T. (2018). Dunce phosphodiesterase acts as a checkpoint for Drosophila long-term memory in a pair of serotonergic neurons. Neuron 98(2): 350-365.e355. PubMed ID: 29673482 Musso, P. Y., Lampin-Saint-Amaux, A., Tchenio, P. and Preat, T. (2017). Ingestion of artificial sweeteners leads to caloric frustration memory in Drosophila. Nat Commun 8(1): 1803. PubMed ID: 29180783 Turrel, O., Goguel, V. and Preat, T. (2017). Drosophila neprilysin 1 rescues memory deficits caused by amyloid-beta peptide. J Neurosci [Epub ahead of print]. PubMed ID: 28931572 Placais, P. Y., de Tredern, E., Scheunemann, L., Trannoy, S., Goguel, V., Han, K. A., Isabel, G. and Preat, T. (2017). Upregulated energy metabolism in the Drosophila mushroom body is the trigger for long-term memory. Nat Commun 8: 15510. PubMed ID: 28580949 Holly, R. W., Jones, K. and Prehoda, K. E. (2020). A Conserved PDZ-Binding Motif in aPKC Interacts with Par-3 and Mediates Cortical Polarity. Curr Biol 30(5): 893-898. PubMed ID: 32084408 Golub, O., Wee, B., Newman, R. A., Paterson, N. M. and Prehoda, K. E. (2017). Activation of Discs large by aPKC aligns the mitotic spindle to the polarity axis during asymmetric cell division. Elife 6. PubMed ID: 29185419 Whitney, D. S., Peterson, F. C., Kittell, A. W., Egner, J. M., Prehoda, K. E. and Volkman, B. F. (2016). Binding of Crumbs to the Par-6 CRIB-PDZ module is regulated by Cdc42. Biochemistry 55: 1455-1461. PubMed ID: 26894406 Bailey, M. J. and Prehoda, K. E. (2015). Establishment of par-polarized cortical domains via phosphoregulated membrane motifs. Dev Cell 35: 199-210. PubMed ID: 26481050 Graybill, C. and Prehoda, K. E. (2014). Ordered multi-site phosphorylation of Lethal giant larvae by atypical Protein Kinase C. Biochemistry. PubMed ID: 25000553 Lu, M. S. and Prehoda, K. E. (2013). A NudE/14-3-3 pathway coordinates dynein and the kinesin Khc73 to position the mitotic spindle. Dev Cell 26: 369-380. PubMed ID: 23987511 Nagel, A. C., Maier, D., Scharpf, J., Ketelhut, M. and Preiss, A. (2020). Limited Availability of General Co-Repressors Uncovered in an Overexpression Context during Wing Venation in Drosophila melanogaster. Genes (Basel) 11(10). PubMed ID: 32998295 Maier, D., Nagel, A. C. and Preiss, A. (2019). Genetic interactions between Protein Kinase D and Lobe mutants during eye development of Drosophila melanogaster. Hereditas 156: 37. PubMed ID: 31889943 Wolf, D., Smylla, T. K., Reichmuth, J., Hoffmeister, P., Kober, L., Zimmermann, M., Turkiewicz, A., Borggrefe, T., Nagel, A. C., Oswald, F., Preiss, A. and Maier, D. (2019). Nucleo-cytoplasmic shuttling of Drosophila Hairless/Su(H) heterodimer as a means of regulating Notch dependent transcription. Biochim Biophys Acta Mol Cell Res 1866(10): 1520-1532. PubMed ID: 31326540 Smylla, T. K., Meier, M., Preiss, A. and Maier, D. (2019). The Notch repressor complex in Drosophila: in vivo analysis of Hairless mutants using overexpression experiments. Dev Genes Evol. PubMed ID: 30612166 Bayer, F. E., Zimmermann, M., Preiss, A. and Nagel, A. C. (2018). Overexpression of the Drosophila ATR homologous checkpoint kinase Mei-41 induces a G2/M checkpoint in Drosophila imaginal tissue. Hereditas 155: 27. PubMed ID: 30202398 Preiss, A., Nagel, A. C., Praxenthaler, H. and Maier, D. (2018). Complex genetic interactions of novel Suppressor of Hairless alleles deficient in co-repressor binding. PLoS One 13(3): e0193956. PubMed ID: 29509808 Nagel, A. C., Auer, J. S., Schulz, A., Pfannstiel, J., Yuan, Z., Collins, C. E., Kovall, R. A. and Preiss, A. (2017). Phosphorylation of Suppressor of Hairless impedes its DNA-binding activity. Sci Rep 7(1): 11820. PubMed ID: 28928428 Praxenthaler, H., Nagel, A. C., Schulz, A., Zimmermann, M., Meier, M., Schmid, H., Preiss, A. and Maier, D. (2017). Hairless-binding deficient Suppressor of Hairless alleles reveal Su(H) protein levels are dependent on complex formation with Hairless. PLoS Genet 13(5): e1006774. PubMed ID: 28475577 Smylla, T.K., Preiss, A. and Maier, D. (2016). In vivo analysis of internal ribosome entry at the Hairless locus by genome engineering in Drosophila. Sci Rep 6: 34881. PubMed ID: 27713501 Yuan, Z., Praxenthaler, H., Tabaja, N., Torella, R., Preiss, A., Maier, D. and Kovall, R. A. (2016). Structure and Function of the Su(H)-Hairless Repressor Complex, the Major Antagonist of Notch Signaling in Drosophila melanogaster. PLoS Biol 14: e1002509. PubMed ID: 27404588 Meiklejohn, C. D., Landeen, E. L., Gordon, K. E., Rzatkiewicz, T., Kingan, S. B., Geneva, A. J., Vedanayagam, J. P., Muirhead, C. A., Garrigan, D., Stern, D. L. and Presgraves, D. C. (2018). Gene flow mediates the role of sex chromosome meiotic drive during complex speciation. Elife 7. PubMed ID: 30543325 Landeen, E. L., Muirhead, C. A., Wright, L., Meiklejohn, C. D. and Presgraves, D. C. (2016). Sex chromosome-wide transcriptional suppression and compensatory cis-regulatory evolution mediate gene expression in the Drosophila male germline. PLoS Biol 14: e1002499. PubMed ID: 27404402 Brand, C. L., Larracuente, A. M. and Presgraves, D. C. (2015). Origin, evolution, and population genetics of the selfish Segregation Distorter gene duplication in European and African populations of Drosophila melanogaster. Evolution 69: 1271-1283. PubMed ID: 25828399 Tang, S. and Presgraves, D. C. (2015). Lineage-Specific Evolution of the Complex Nup160 Hybrid Incompatibility Between Drosophila melanogaster and Its Sister Species. Genetics 200: 1245-1254. PubMed ID: 26022241 Garrigan, D., Kingan, S. B., Geneva, A. J., Vedanayagam, J. P. and Presgraves, D. C. (2015). Genome Diversity and Divergence in Drosophila mauritiana: Multiple Signatures of Faster X Evolution. Genome Biol Evol 7: 1331. PubMed ID: 25991815 Brand, C. L., Larracuente, A. M. and Presgraves, D. C. (2015). Origin, evolution, and population genetics of the selfish Segregation Distorter gene duplication in European and African populations of Drosophila melanogaster. Evolution 69: 1271-1283. PubMed ID: 25828399 Garrigan, D., Kingan, S. B., Geneva, A. J., Vedanayagam, J. P. and Presgraves, D. C. (2014). Genome diversity and divergence in Drosophila mauritiana: multiple signatures of faster X evolution. Genome Biol Evol 6: 2444-2458. PubMed ID: 25193308 Venkatesan, A., Fan, J. Y., Bouyain, S. and Price, J. L. (2019). The circadian tau mutation in Casein Kinase 1 is part of a larger domain that can be mutated to shorten circadian period. Int J Mol Sci 20(4). PubMed ID: 30769795 Venkatesan, A., Fan, J. Y., Nauman, C. and Price, J. L. (2015). A Doubletime nuclear localization signal mediates an interaction with Bride of Doubletime to promote circadian function. J Biol Rhythms [Epub ahead of print]. PubMed ID: 26082158 Fan, J. Y., Means, J. C., Bjes, E. S. and Price, J. L. (2015). Drosophila DBT autophosphorylation of its C terminal domain antagonized by SPAG and involved in UV-induced apoptosis. Mol Cell Biol. PubMed ID: 25939385 Means, J.C., Venkatesan, A., Gerdes, B., Fan, J.Y., Bjes, E.S. and Price, J.L. (2015). Drosophila Spaghetti and Doubletime link the circadian clock and light to caspases, apoptosis and tauopathy. PLoS Genet 11: e1005171. PubMed ID: 25951229 He, C., Yang, Y., Zhang, M., Price, J. L. and Zhao, Z. (2013). Regulation of Sleep by Neuropeptide Y-Like System in Drosophila melanogaster. PLoS One 8: e74237. PubMed ID: 24040211 Yu, W., Zheng, H., Price, J. L. and Hardin, P. E. (2009). DOUBLETIME plays a noncatalytic role to mediate CLOCK phosphorylation and repress CLOCK-dependent transcription within the Drosophila circadian clock. Mol Cell Biol 29: 1452-1458. PubMed ID: 19139270 Fan, J. Y., Preuss, F., Muskus, M. J., Bjes, E. S. and Price, J. L. (2009). Drosophila and vertebrate casein kinase Idelta exhibits evolutionary conservation of circadian function. Genetics 181: 139-152. PubMed ID: 18957703 Heys, C., Lize, A., Lewis, Z. and Price, T. A. R. (2020). Drosophila sexual attractiveness in older males is mediated by their microbiota. Microorganisms 8(2). PubMed ID: 31991698 Verspoor, R. L., Smith, J. M. L., Mannion, N. L. M., Hurst, G. D. D. and Price, T. A. R. (2018). Strong hybrid male incompatibilities impede the spread of a selfish chromosome between populations of a fly. Evol Lett 2(3): 169-179. PubMed ID: 30283674 Giraldo-Perez, P., Herrera, P., Campbell, A., Taylor, M. L., Skeats, A., Aggio, R., Wedell, N. and Price, T. A. (2015). Winter is coming: hibernation reverses the outcome of sperm competition in a fly. J Evol Biol. PubMed ID: 26565889 Verspoor, R. L., Heys, C. and Price, T. A. (2015). Dyeing insects for behavioral assays: the mating behavior of anesthetized Drosophila. J Vis Exp. PubMed ID: 25938821 Maguire, C. P., Lize, A. and Price, T. A. (2015). Assessment of rival males through the use of multiple sensory cues in the fruitfly Drosophila pseudoobscura. PLoS One 10: e0123058. PubMed ID: 25849643 Bretman, A., Lize, A., Walling, C. A. and Price, T. A. (2014). The heritability of mating behaviour in a fly and its plasticity in response to the threat of sperm competition. PLoS One 9: e90236. PubMed ID: 24587294 Fisher, D. N., Doff, R. J. and Price, T. A. (2013). True polyandry and pseudopolyandry: why does a monandrous fly remate? BMC Evol Biol 13: 157. PubMed ID: 23885723 Price, T. A., Lize, A., Marcello, M. and Bretman, A. (2012). Experience of mating rivals causes males to modulate sperm transfer in the fly Drosophila pseudoobscura. J Insect Physiol 58: 1669-1675. PubMed ID: 23085556 Poetini, M. R., Musachio, E. A. S., Araujo, S. M., Almeida, F. P., Dahleh, M. M. M., Bortolotto, V. C., Janner, D. E., Pinheiro, F. C., Ramborger, B. P., Roehrs, R., La Rosa Novo, D., Mesko, M. F., Guerra, G. P. and Prigol, M. (2021). Iron overload during the embryonic period develops hyperactive like behavior and dysregulation of biogenic amines in Drosophila melanogaster. Dev Biol 475: 80-90. PubMed ID: 33741348 Meichtry, L. B., Poetini, M. R., Dahleh, M. M. M., Araujo, S. M., Musachio, E. A. S., Bortolotto, V. C., de Freitas Couto, S., Somacal, S., Emanuelli, T., Gayer, M. C., Roehrs, R., Guerra, G. P. and Prigol, M. (2020). Addition of Saturated and Trans-fatty Acids to the Diet Induces Depressive and Anxiety-like Behaviors in Drosophila melanogaster. Neuroscience 443: 164-175. PubMed ID: 32738432 Araujo, S. M., Bortolotto, V. C., Poetini, M. R., Dahleh, M. M. M., Couto, S. F., Pinheiro, F. C., Meichtry, L. B., Musachio, E. A. S., Ramborger, B. P., Roehrs, R., Guerra, G. P. and Prigol, M. (2021). gamma-Oryzanol produces an antidepressant-like effect in a chronic unpredictable mild stress model of depression in Drosophila melanogaster. Stress 24(3): 282-293. PubMed ID: 32723199 Harrison, B. R., Hoffman, J. M., Samuelson, A., Raftery, D. and Promislow, D. E. L. (2021). Modular Evolution of the Drosophila Metabolome. Mol Biol Evol. PubMed ID: 34662414 Jin, K., Wilson, K. A., Beck, J. N., Nelson, C. S., Brownridge, G. W., 3rd, Harrison, B. R., Djukovic, D., Raftery, D., Brem, R. B., Yu, S., Drton, M., Shojaie, A., Kapahi, P. and Promislow, D. (2020). Genetic and metabolomic architecture of variation in diet restriction-mediated lifespan extension in Drosophila. PLoS Genet 16(7): e1008835. PubMed ID: 32644988 Harrison, B. R., Wang, L., Gajda, E., Hoffman, E. V., Chung, B. Y., Pletcher, S. D., Raftery, D. and Promislow, D. E. L. (2020). The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster. BMC Genomics 21(1): 341. PubMed ID: 32366330 Arbuthnott, D., Fedina, T.Y., Pletcher, S.D. and Promislow, D.E. (2017). Mate choice in fruit flies is rational and adaptive. Nat Commun 8: 13953. PubMed ID: 28094789 Harvanek, Z. M., Mourao, M. A., Schnell, S. and Pletcher, S. D. (2016). A computational approach to studying ageing at the individual level. Proc Biol Sci 283. PubMed ID: 26865300 Arbuthnott, D., Levin, T. C. and Promislow, D. E. (2015). The impacts of Wolbachia and the microbiome on mate choice in Drosophila melanogaster. J Evol Biol [Epub ahead of print]. PubMed ID: 26548557 Laye, M. J., Tran, V., Jones, D. P., Kapahi, P. and Promislow, D. E. (2015). The effects of age and dietary restriction on the tissue-specific metabolome of Drosophila. Aging Cell [Epub ahead of print]. PubMed ID: 26085309 Hoffman, J. M., Soltow, Q. A., Li, S., Sidik, A., Jones, D. P. and Promislow, D. E. (2014). Effects of age, sex, and genotype on high-sensitivity metabolomic profiles in the fruit fly, Drosophila melanogaster. Aging Cell. PubMed ID: 24636523 Linder, J. E. and Promislow, D. E. (2009). Cross-generational fitness effects of infection in Drosophila melanogaster. Fly (Austin) 3: 143-150. PubMed ID: 19242114 Qu, Y., Hahn, I., Lees, M., Parkin, J., Voelzmann, A., Dorey, K., Rathbone, A., Friel, C. T., Allan, V. J., Okenve-Ramos, P., Sanchez-Soriano, N. and Prokop, A. (2019). Efa6 protects axons and regulates their growth and branching by inhibiting microtubule polymerisation at the cortex. Elife 8. PubMed ID: 31718774 Qu, Y., Hahn, I., Webb, S., Pearce, S. P. and Prokop, A. (2016). Periodic actin structures in neuronal axons are required to maintain microtubules. Mol Biol Cell [Epub ahead of print]. PubMed ID: 27881663 Voelzmann, A., Okenve-Ramos, P., Qu, Y., Chojnowska-Monga, M., Del Caño-Espinel, M., Prokop, A. and Sanchez-Soriano, N. (2016). Tau and spectraplakins promote synapse formation and maintenance through Jun kinase and neuronal trafficking. Elife 5. PubMed ID: 27501441 Hahn, I., Ronshaugen, M., Sanchez-Soriano, N. and Prokop, A. (2016). Functional and Genetic Analysis of Spectraplakins in Drosophila. Methods Enzymol 569: 373-405. PubMed ID: 26778568 Beaven, R., Dzhindzhev, N. S., Qu, Y., Hahn, I., Dajas-Bailador, F., Ohkura, H. and Prokop, A. (2015). Drosophila CLIP-190 and mammalian CLIP-170 display reduced microtubule plus end association in the nervous system. Mol Biol Cell. PubMed ID: 25694447 Stephan, D., Sanchez-Soriano, N., Loschek, L.F., Gerhards, R., Gutmann, S., Storchova, Z., Prokop, A., and Kadow, I.C. (2012). Drosophila Psidin Regulates Olfactory Neuron Number and Axon Targeting through Two Distinct Molecular Mechanisms. J. Neurosci. 32: 16080-16094. PubMed ID: 23152593 Alves-Silva, J., Sánchez-Soriano, N., Beaven, R., Klein, M., Parkin, J., Millard, T., Bellen, H., Venken, K. J. T., Ballestrem, C., Kammerer, R.A. and Prokop, A. (2012). Spectraplakins promote microtubule-mediated axonal growth by functioning as structural microtubule-associated proteins and EB1-dependent +TIPs (Tip Interacting Proteins). J. Neurosci. 32: 9143-58. PubMed ID: 22764224 Le Poul, Y., Xin, Y., Ling, L., Muhling, B., Jaenichen, R., Horl, D., Bunk, D., Harz, H., Leonhardt, H., Wang, Y., Osipova, E., Museridze, M., Dharmadhikari, D., Murphy, E., Rohs, R., Preibisch, S., Prud'homme, B. and Gompel, N. (2020). Regulatory encoding of quantitative variation in spatial activity of a Drosophila enhancer. Sci Adv 6(49). PubMed ID: 33268361 Paris, M., Boyer, R., Jaenichen, R., Wolf, J., Karageorgi, M., Green, J., Cagnon, M., Parinello, H., Estoup, A., Gautier, M., Gompel, N. and Prud'homme, B. (2020). Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing. Sci Rep 10(1): 11227. PubMed ID: 32641717 Zeng, X., Komanome, Y., Kawasaki, T., Inada, K., Jonaitis, J., Pulver, S. R., Kazama, H. and Nose, A. (2021). An electrically coupled pioneer circuit enables motor development via proprioceptive feedback in Drosophila embryos. Curr Biol 31(23): 5327-5340 e5325. PubMed ID: 34666002 Hiramoto, A., Jonaitis, J., Niki, S., Kohsaka, H., Fetter, R. D., Cardona, A., Pulver, S. R. and Nose, A. (2021). Regulation of coordinated muscular relaxation in Drosophila larvae by a pattern-regulating intersegmental circuit. Nat Commun 12(1): 2943. PubMed ID: 34011945 Murawski, C., Pulver, S. R. and Gather, M. C. (2020). Segment-specific optogenetic stimulation in Drosophila melanogaster with linear arrays of organic light-emitting diodes. Nat Commun 11(1): 6248. PubMed ID: 33288763 Morton, A., Murawski, C., Pulver, S. R. and Gather, M. C. (2016). High-brightness organic light-emitting diodes for optogenetic control of Drosophila locomotor behaviour. Sci Rep 6: 31117. PubMed ID: 27484401 Norman, M., Vuilleumier, R., Springhorn, A., Gawlik, J. and Pyrowolakis, G. (2016). Pentagone internalises glypicans to fine-tune multiple signalling pathways. Elife [Epub ahead of print]. PubMed ID: 27269283 Charbonnier, E., Fuchs, A., Cheung, L.S., Chayengia, M., Veikkolainen, V., Shvartsman, S.Y. and Pyrowolakis, G. (2015). BMP-dependent gene repression cascade in drosophila eggshell patterning. Dev Biol [Epub ahead of print]. PubMed ID: 25704512 Marmion, R. A., Jevtic, M., Springhorn, A., Pyrowolakis, G. and Yakoby, N. (2012). The Drosophila BMPRII, wishful thinking, is required for eggshell patterning. Dev Biol. PubMed ID: 23274688 Fuchs, A., Cheung, L. S., Charbonnier, E., Shvartsman, S. Y. and Pyrowolakis, G. (2012). Transcriptional interpretation of the EGF receptor signaling gradient. Proc Natl Acad Sci U S A 109: 1572-1577. PubMed ID: 22307613 Vuilleumier, R., Affolter, M. and Pyrowolakis, G. (2011). Pentagone: patrolling BMP morphogen signaling. Fly (Austin) 5: 210-214. PubMed ID: 21406970 Walkowicz, L., Krzeptowski, W., Krzeptowska, E., Warzecha, K., Salek, J., Gorska-Andrzejak, J. and Pyza, E. (2021). Glial expression of DmMANF is required for the regulation of activity, sleep and circadian rhythms in the visual system of Drosophila melanogaster. Eur J Neurosci. PubMed ID: 33666288 Damulewicz, M., Woznicka, O., Jasinska, M. and Pyza, E. (2020). CRY-dependent plasticity of tetrad presynaptic sites in the visual system of Drosophila at the morning peak of activity and sleep. Sci Rep 10(1): 18161. PubMed ID: 33097794 Doktor, B., Damulewicz, M. and Pyza, E. (2019). Effects of MUL1 and PARKIN on the circadian clock, brain and behaviour in Drosophila Parkinson's disease models. BMC Neurosci 20(1): 24. PubMed ID: 31138137 Doktor, B., Damulewicz, M. and Pyza, E. (2019). Overexpression of Mitochondrial Ligases Reverses Rotenone-Induced Effects in a Drosophila Model of Parkinson's Disease. Front Neurosci 13: 94. PubMed ID: 30837828 |