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Yu, H. H. and Zallen, J. A. (2020). Abl and Canoe/Afadin mediate mechanotransduction at tricellular junctions. Science 370(6520). PubMed ID: 33243859 Kasza, K. E., Supriyatno, S. and Zallen, J. A. (2019). Cellular defects resulting from disease-related myosin II mutations in Drosophila. Proc Natl Acad Sci U S A. PubMed ID: 31615886 Pare, A. C., Naik, P., Shi, J., Mirman, Z., Palmquist, K. H. and Zallen, J. A. (2019). An LRR Receptor-Teneurin System Directs Planar Polarity at Compartment Boundaries. Dev Cell. PubMed ID: 31495696 Razzell, W., Bustillo, M. E. and Zallen, J. A. (2018). The force-sensitive protein Ajuba regulates cell adhesion during epithelial morphogenesis. J Cell Biol. PubMed ID: 30006462 Farrell, D. L., Weitz, O., Magnasco, M. O. and Zallen, J. A. (2017). SEGGA: a toolset for rapid automated analysis of epithelial cell polarity and dynamics. Development 144(9): 1725-1734. PubMed ID: 28465336 Spencer, A. K., Schaumberg, A. J. and Zallen, J. A. (2017). 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The RNA-Binding ATPase, Armitage, Couples piRNA Amplification in Nuage to Phased piRNA Production on Mitochondria. Mol Cell. PubMed ID: 31076285 Chang, T. H., Mattei, E., Gainetdinov, I., Colpan, C., Weng, Z. and Zamore, P. D. (2018). Maelstrom represses canonical Polymerase II transcription within bi-directional piRNA clusters in Drosophila melanogaster. Mol Cell. PubMed ID: 30527661 Wang, W., Han, B. W., Tipping, C., Ge, D. T., Zhang, Z., Weng, Z. and Zamore, P. D. (2015). Slicing and binding by Ago3 or Aub trigger Piwi-bound piRNA production by distinct mechanisms. Mol Cell 59: 819-830. PubMed ID: 26340424 Han, B. W., Wang, W., Li, C., Weng, Z. and Zamore, P. D. (2015). Noncoding RNA. piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production. Science 348: 817-821. PubMed ID: 25977554 Roy, C. K., Olson, S., Graveley, B. R., Zamore, P. D. and Moore, M. J. (2015). Assessing long-distance RNA sequence connectivity via RNA-templated DNA-DNA ligation. 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PubMed ID: 34424253 Lehmkuhl, E. M., Loganathan, S., Alsop, E., Blythe, A. D., Kovalik, T., Mortimore, N. P., Barrameda, D., Kueth, C., Eck, R. J., Siddegowda, B. B., Joardar, A., Ball, H., Macias, M. E., Bowser, R., Van Keuren-Jensen, K. and Zarnescu, D. C. (2021). TDP-43 proteinopathy alters the ribosome association of multiple mRNAs including the glypican Dally-like protein (Dlp)/GPC6. Acta Neuropathol Commun 9(1): 52. PubMed ID: 33762006 Manzo, E., Lorenzini, I., Barrameda, D., O'Conner, A. G., Barrows, J. M., Starr, A., Kovalik, T., Rabichow, B. E., Lehmkuhl, E. M., Shreiner, D. D., Joardar, A., Lievens, J. C., Bowser, R., Sattler, R. and Zarnescu, D. C. (2019). Glycolysis upregulation is neuroprotective as a compensatory mechanism in ALS. Elife 8. PubMed ID: 31180318 Francois-Moutal, L., Scott, D. D., Felemban, R., Miranda, V. G., Sayegh, M. R., Perez-Miller, S., Khanna, R., Gokhale, V., Zarnescu, D. C. and Khanna, M. (2019). A small molecule targeting TDP-43's RNA recognition motifs reduces locomotor defects in a Drosophila model of ALS. ACS Chem Biol. PubMed ID: 31241884 Manzo, E., O'Conner, A. G., Barrows, J. M., Shreiner, D. D., Birchak, G. J. and Zarnescu, D. C. (2018). Medium-chain fatty acids, beta-hydroxybutyric acid and genetic modulation of the carnitine shuttle are protective in a Drosophila model of ALS Based on TDP-43. Front Mol Neurosci 11: 182. PubMed ID: 29904341 Daniel, S. G., Russ, A. D., Guthridge, K. M., Raina, A. I., Estes, P. S., Parsons, L. M., Richardson, H. E., Schroeder, J. A. and Zarnescu, D. C. (2018). miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila. Biol Open 7(1). PubMed ID: 29361610 Coyne, A. N., Lorenzini, I., Chou, C. C., Torvund, M., Rogers, R. S., Starr, A., Zaepfel, B. L., Levy, J., Johannesmeyer, J., Schwartz, J. C., Nishimune, H., Zinsmaier, K., Rossoll, W., Sattler, R. and Zarnescu, D. C. (2017). Post-transcriptional inhibition of Hsc70-4/HSPA8 expression leads to synaptic vesicle cycling defects in multiple models of ALS. Cell Rep 21(1): 110-125. PubMed ID: 28978466 Novak, S. M., Joardar, A., Gregorio, C. C. and Zarnescu, D. C. (2015). Regulation of heart rate in Drosophila via Fragile X mental retardation protein. PLoS One 10: e0142836. PubMed ID: 26571124 Coyne, A. N., Yamada, S. B., Siddegowda, B. B., Estes, P. S., Zaepfel, B. L., Johannesmeyer, J. S., Lockwood, D. B., Pham, L. T., Hart, M. P., Cassel, J. A., Freibaum, B., Boehringer, A. V., Taylor, J. P., Reitz, A. B., Gitler, A. D. and Zarnescu, D. C. (2015). Fragile X protein mitigates TDP-43 toxicity by remodeling RNA granules and restoring translation. Hum Mol Genet. PubMed ID: 26385636 ' Dissel, S., Morgan, E., Duong, V., Chan, D., van Swinderen, B., Shaw, P. and Zars, T. (2020). Sleep restores place learning to the adenylyl cyclase mutant rutabaga. J Neurogenet: 1-9. PubMed ID: 31997683 Ostrowski, D., Salari, A., Zars, M. and Zars, T. (2018). A biphasic locomotor response to acute unsignaled high temperature exposure in Drosophila. PLoS One 13(6): e0198702. PubMed ID: 29883493 Baggett, V., Mishra, A., Kehrer, A. L., Robinson, A. O., Shaw, P. and Zars, T. (2018). Place learning overrides innate behaviors in Drosophila. Learn Mem 25(3): 122-128. PubMed ID: 29449456 Mishra, A., Salari, A., Berigan, B. R., Miguel, K. C., Amirshenava, M., Robinson, A., Zars, B. C., Lin, J. L., Milescu, L. S., Milescu, M. and Zars, T. (2018). The Drosophila Gr28bD product is a non-specific cation channel that can be used as a novel thermogenetic tool. Sci Rep 8(1): 901. PubMed ID: 29343813 Sitaraman, D., Kramer, E. F., Kahsai, L., Ostrowski, D. and Zars, T. (2017). Discrete serotonin systems mediate memory enhancement and escape latencies after unpredicted aversive experience in Drosophila place memory. Front Syst Neurosci 11: 92. PubMed ID: 29321732 LaFerriere, H. and Zars, T. (2017). The Drosophila melanogaster tribbles pseudokinase is necessary for proper memory formation. Neurobiol Learn Mem 144: 68-76. PubMed ID: 28669782 Ostrowski, D., Kahsai, L., Kramer, E. F., Knutson, P. and Zars, T. (2015). Place memory retention in Drosophila. Neurobiol Learn Mem [Epub ahead of print]. PubMed ID: 26143995 Chen, A., Kramer, E. F., Purpura, L., Krill, J. L., Zars, T. and Dawson-Scully, K. (2011). The influence of natural variation at the foraging gene on thermotolerance in adult Drosophila in a narrow temperature range. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 197: 1113-1118. PubMed ID: 21861180 LaFerriere, H., Ostrowski, D., Guarnieri, D. J. and Zars, T. (2011). The arouser EPS8L3 gene is critical for normal memory in Drosophila. PLoS One 6: e22867. PubMed ID: 21818402 Fisher, K. H., Stec, W., Brown, S. and Zeidler, M. P. (2015). Mechanisms of JAK/STAT pathway negative regulation by the short coreceptor Eye Transformer / Latran. Mol Biol Cell. PubMed ID: 26658615 Thomas, S., Fisher, K. H., Snowden, J. A., Danson, S. J., Brown, S. and Zeidler, M. P. (2015). Methotrexate is a JAK/STAT pathway inhibitor. PLoS One 10: e0130078. PubMed ID: 26131691 Bausek, N. and Zeidler, M. P. (2013). Galpha73B is a downstream effector of JAK/STAT signalling and a regulator of Rho1 in Drosophila haematopoiesis. J Cell Sci. PubMed ID: 24163435 Zeidler, M. P. and Bausek, N. (2013). The Drosophila JAK-STAT pathway. JAKSTAT 2: e25353. PubMed ID: 24069564 Wells, R. E., Barry, J. D., Warrington, S. J., Cuhlmann, S., Evans, P., Huber, W., Strutt, D. and Zeidler, M. P. (2013). Control of tissue morphology by Fasciclin III-mediated intercellular adhesion. Development. PubMed ID: 23946443 Johnstone, K., Wells, R. E., Strutt, D. and Zeidler, M. P. (2013). Localised Jak/STAT pathway activation is required for Drosophila wing hinge development. PLoS One 8: e65076. PubMed ID: 23741461 Fisher, K. H., Wright, V. M., Taylor, A., Zeidler, M. P. and Brown, S. (2012). Advances in genome-wide RNAi cellular screens: a case study using the Drosophila JAK/STAT pathway. BMC Genomics 13: 506. PubMed ID: 23006893 Stec, W. J. and Zeidler, M. P. (2011). Drosophila SOCS Proteins. J Signal Transduct 2011: 894510. PubMed ID: 22203896 Wright, V. M., Vogt, K. L., Smythe, E. and Zeidler, M. P. (2011). Differential activities of the Drosophila JAK/STAT pathway ligands Upd, Upd2 and Upd3. Cell Signal 23: 920-927. PubMed ID: 21262354 Tettey, T. T., Gao, X., Shao, W., Li, H., Story, B. A., Chitsazan, A. D., Glaser, R. L., Goode, Z. H., Seidel, C. W., Conaway, R. C., Zeitlinger, J., Blanchette, M. and Conaway, J. W. (2019). A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing. Cell Rep 27(13): 3770-3779. PubMed ID: 31242411 Shao, W., Alcantara, S. G. and Zeitlinger, J. (2019). Reporter-ChIP-nexus reveals strong contribution of the Drosophila initiator sequence to RNA polymerase pausing. Elife 8. PubMed ID: 31021316 Papagianni, A., Fores, M., Shao, W., He, S., Koenecke, N., Andreu, M. J., Samper, N., Paroush, Z., Gonzalez-Crespo, S., Zeitlinger, J. and Jimenez, G. (2018). Capicua controls Toll/IL-1 signaling targets independently of RTK regulation. Proc Natl Acad Sci U S A 115(8): 1807-1812. PubMed ID: 29432195 Pascual, J., Jacobs, J., Sansores-Garcia, L., Natarajan, M., Zeitlinger, J., Aerts, S., Halder, G. and Hamaratoglu, F. (2017). Hippo Reprograms the Transcriptional Response to Ras Signaling. Dev Cell 42(6): 667-680.e664. PubMed ID: 28950103 Koenecke, N., Johnston, J., He, Q., Meier, S. and Zeitlinger, J. (2016). Drosophila poised enhancers are generated during tissue patterning with the help of repression. Genome Res [Epub ahead of print]. PubMed ID: 27979994 Koenecke, N., Johnston, J., Gaertner, B., Natarajan, M. and Zeitlinger, J. (2016). Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis. Genome Biol 17: 196. PubMed ID: 27678375 Sun, Y., Nien, C.Y., Chen, K., Liu, H.Y., Johnston, J., Zeitlinger, J. and Rushlow, C. (2015). Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation. Genome Res [Epub ahead of print]. PubMed ID: 26335633 Gaertner, B. and Zeitlinger, J. (2014). RNA polymerase II pausing during development. Development 141: 1179-1183. PubMed ID: 24595285 Bardet, A. F., Steinmann, J., Bafna, S., Knoblich, J. A., Zeitlinger, J. and Stark, A. (2013). Identification of transcription factor binding sites from ChIP-seq data at high-resolution. Bioinformatics. PubMed ID: 23980024 Han, S., Basting, P. J., Dias, G. B., Luhur, A., Zelhof, A. C. and Bergman, C. M. (2021). Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture. Genetics 219(2). PubMed ID: 34849875 Mariyappa, D., Luhur, A., Overton, D. and Zelhof, A. C. (2021). Generation of Drosophila attP containing cell lines using CRISPR-Cas9. G3 (Bethesda). PubMed ID: 33963853 Luhur, A., Mariyappa, D., Klueg, K. M., Buddika, K., Tennessen, J. M. and Zelhof, A. C. (2020). Adapting Drosophila melanogaster Cell Lines to Serum-Free Culture Conditions. G3 (Bethesda). PubMed ID: 33028628 Mahato, S., Nie, J., Plachetzki, D. C. and Zelhof, A. C. (2018). A mosaic of independent innovations involving eyes shut are critical for the evolutionary transition from fused to open rhabdoms. Dev Biol. PubMed ID: 30243673 Liang, X., Mahato, S., Hemmerich, C. and Zelhof, A. C. (2016). Two temporal functions of Glass: Ommatidium patterning and photoreceptor differentiation. Dev Biol. PubMed ID: 27105580 Nie, J., Mahato, S. and Zelhof, A. C. (2015). Imaging the Drosophila retina: zwitterionic buffers PIPES and HEPES induce morphological artifacts in tissue fixation. BMC Dev Biol 15: 10. PubMed ID: 25645690 Nie, J., Mahato, S. and Zelhof, A. C. (2014). The actomyosin machinery is required for Drosophila retinal lumen formation. PLoS Genet 10: e1004608. PubMed ID: 25233220 Terrell, D., Xie, B., Workman, M., Mahato, S., Zelhof, A., Gebelein, B. and Cook, T. (2012). OTX2 and CRX rescue overlapping and photoreceptor-specific functions in the Drosophila eye. Dev Dyn 241: 215-228. PubMed ID: 22113834 Jackson, B. C., Campos, J. L. and Zeng, K. (2014). The effects of purifying selection on patterns of genetic differentiation between Drosophila melanogaster populations. Heredity (Edinb). PubMed ID: 25227256 Campos, J. L., Zeng, K., Parker, D. J., Charlesworth, B. and Haddrill, P. R. (2013). Codon usage bias and effective population sizes on the X chromosome versus the autosomes in Drosophila melanogaster. Mol Biol Evol 30: 811-823. 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PubMed ID: 24282550 Chountala, M., Vakaloglou, K. M. and Zervas, C. G. (2012). Parvin overexpression uncovers tissue-specific genetic pathways and disrupts F-actin to induce apoptosis in the developing epithelia in Drosophila. PLoS One 7: e47355. PubMed ID: 23077599 Brazill, J. M., Cruz, B., Zhu, Y. and Zhai, R. G. (2018). Nmnat mitigates sensory dysfunction in a Drosophila model of paclitaxel-induced peripheral neuropathy. Dis Model Mech 11(6). PubMed ID: 29716954 Ruan, K., Zhu, Y., Li, C., Brazill, J. M. and Zhai, R. G. (2015). Alternative splicing of Drosophila Nmnat functions as a switch to enhance neuroprotection under stress. Nat Commun 6: 10057. PubMed ID: 26616331 Vanlandingham, P. A., Barmchi, M. P., Royer, S., Green, R., Bao, H., Reist, N. and Zhang, B. (2014). AP180 Couples Protein Retrieval to Clathrin-mediated Endocytosis of Synaptic Vesicles. Traffic. PubMed ID: 24456281 Vanlandingham, P. A., Fore, T. R., Chastain, L. R., Royer, S. M., Bao, H., Reist, N. E. and Zhang, B. (2013). Epsin 1 Promotes Synaptic Growth by Enhancing BMP Signal Levels in Motoneuron Nuclei. PLoS One 8: e65997. PubMed ID: 23840387 Kumimoto, E. L., Fore, T. R., Zhang, B. (2013) Transcriptome Profiling Following Neuronal and Glial Expression of ALS-Linked SOD1 in Drosophila. G3 (Bethesda). PubMed ID: 23550139 Kim, Y, J., Bao, H., Bonanno, L., Zhang, B. and Serpe, M. (2012). Drosophila Neto is essential for clustering glutamate receptors at the neuromuscular junction. Genes Dev. 26: 974-987. PubMed ID: 22499592 Koles, K., et al. (2012). Mechanism of Evenness interrupted (Evi)-exosome release at synaptic boutons. J. Biol. Chem 287: 16820-34. PubMed ID: 22437826 Hao, X., Wang, S., Lu, Y., Yu, W., Li, P., Jiang, D., Guo, T., Li, M., Li, J., Xu, J., Wu, W., Ho, M. S. and Zhang, L. (2020). Lola regulates Drosophila adult midgut homeostasis via non-canonical hippo signaling. Elife 9. PubMed ID: 31934851 Bu, B., Chen, L., Zheng, L., He, W. and Zhang, L. (2019). Nipped-A regulates the Drosophila circadian clock via histone deubiquitination. EMBO J: e101259. PubMed ID: 31538360 Li, M., Hu, X., Zhang, S., Ho, M. S., Wu, G. and Zhang, L. (2019). Traffic jam regulates the function of the ovarian germline stem cell progeny differentiation niche during pre-adult stage in Drosophila. Sci Rep 9(1): 10124. PubMed ID: 31300663 Bu, B., He, W., Song, L. and Zhang, L. (2019). Nuclear envelope protein MAN1 regulates the Drosophila circadian clock via Period. Neurosci Bull. PubMed ID: 31230212 Zhang, S., Pan, C., Lv, X., Wu, W., Chen, H., Wu, W., Wu, H., Zhang, L. and Zhao, Y. (2017). Repression of Abd-B by Polycomb is critical for cell identity maintenance in adult Drosophila testis. Sci Rep 7(1): 5101. PubMed ID: 28698559 An, Y., Xue, G., Shaobo, Y., Mingxi, D., Zhou, X., Yu, W., Ishibashi, T., Zhang, L. and Yan, Y. (2017). Apical constriction is driven by a pulsatile apical myosin network in delaminating Drosophila neuroblasts. Development. PubMed ID: 28506995 Xu, J., Hao, X., Yin, M. X., Lu, Y., Jin, Y., Xu, J., Ge, L., Wu, W., Ho, M., Yang, Y., Zhao, Y. and Zhang, L. (2017). Function of Nerfin-1 in preventing medulla neurons dedifferentiation requires its inhibition of Notch activity. Development. PubMed ID: 28242614 Wang, S., Lu, Y., Yin, M. X., Wang, C., Wu, W., Li, J., Wu, W., Ge, L., Hu, L., Zhao, Y. and Zhang, L. (2016). Importin α1 mediates Yorkie nuclear import via an N-terminal non-canonical nuclear localization signal. J Biol Chem 291: 7926-7937. PubMed ID: 26887950 Ye, F., Huang, Y., Li, J., Ma, Y., Xie, C., Liu, Z., Deng, X., Wan, J., Xue, T., Liu, W. and Zhang, M. (2018). An unexpected INAD PDZ tandem-mediated PLCbeta binding in Drosophila photo receptors. Elife 7. PubMed ID: 30526850 Wen, D. T., Zheng, L., Ni, L., Wang, H., Feng, Y. and Zhang, M. (2016). The expression of CG9940 affects the adaptation of cardiac function, mobility, and lifespan to exercise in aging Drosophila. Exp Gerontol 83: 6-14. PubMed ID: 27448710 Ye, F., Liu, W., Shang, Y. and Zhang, M. (2016). An exquisitely specific PDZ/target recognition revealed by the structure of INAD PDZ3 in complex with TRP channel tail. Structure [Epub ahead of print]. PubMed ID: 26853938 Wei, Z., Li, Y., Ye, F. and Zhang, M. (2015). Structural basis for the phosphorylation-regulated interaction between the cytoplasmic tail of cell polarity protein crumbs and the actin-binding protein moesin. J Biol Chem 290: 11384-11392. PubMed ID: 25792740 Chen, J. and Zhang, M. (2013). The Par3/Par6/aPKC complex and epithelial cell polarity. Exp Cell Res 319: 1357-1364. PubMed ID: 23535009 Liu, W., Wen, W., Wei, Z., Yu, J., Ye, F., Liu, C. H., Hardie, R. C. and Zhang, M. (2011). The INAD scaffold is a dynamic, redox-regulated modulator of signaling in the Drosophila eye. Cell 145: 1088-1101. PubMed ID: 21703451 Xue, Y., Chiu, J. C. and Zhang, Y. (2019). SUR-8 interacts with PP1-87B to stabilize PERIOD and regulate circadian rhythms in Drosophila. PLoS Genet 15(11): e1008475. PubMed ID: 31710605 Nian, X., Chen, W., Bai, W., Zhao, Z. and Zhang, Y. (2019). miR-263b controls circadian behavior and the structural plasticity of pacemaker neurons by regulating the LIM-only protein Beadex. Cells 8(8). PubMed ID: 31426557 Niu, Y., Liu, Z., Nian, X., Xu, X. and Zhang, Y. (2019). miR-210 controls the evening phase of circadian locomotor rhythms through repression of Fasciclin 2. PLoS Genet 15(7): e1007655. PubMed ID: 31356596 Chen, W., Xue, Y., Scarfe, L., Wang, D. and Zhang, Y. (2019). Loss of Prune in circadian cells decreases the amplitude of the circadian locomotor rhythm in Drosophila. Front Cell Neurosci 13: 76. PubMed ID: 30881291 Hong, H., Zhao, K., Huang, S., Huang, S., Yao, A., Jiang, Y., Sigrist, S., Zhao, L. and Zhang, Y. Q. (2020). Structural remodeling of active zones is associated with synaptic homeostasis. J Neurosci. PubMed ID: 32122953 Metwally, E., Zhao, G., Wang, Q. and Zhang, Y. Q. (2020). Ttm50 facilitates calpain activation by anchoring it to calcium stores and increasing its sensitivity to calcium. Cell Res. PubMed ID: 32848200 Metwally, E., Zhao, G., Li, W., Wang, Q. and Zhang, Y. Q. (2019). Calcium activated Calpain specifically cleaves Glutamate receptor IIA but not IIB at the Drosophila neuromuscular junction. J Neurosci. PubMed ID: 30705102 Huang, Y., Huang, S., Di Scala, C., Wang, Q., Wandall, H. H., Fantini, J. and Zhang, Y. Q. (2018). The glycosphingolipid MacCer promotes synaptic bouton formation in Drosophila by interacting with Wnt. Elife 7. PubMed ID: 30355446 Wu, S., Gan, G., Zhang, Z., Sun, J., Wang, Q., Gao, Z., Li, M., Jin, S., Huang, J., Thomas, U., Jiang, Y. H., Li, Y., Tian, R. and Zhang, Y. Q. (2017). A presynaptic function of Shank protein in Drosophila. J Neurosci 37(48): 11592-11604. PubMed ID: 29074576 Huang, Y., Huang, S., Lam, S. M., Liu, Z., Shui, G. and Zhang, Y. 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| This listing of Fly Labs and References is a work in progress. Please contact Tom Brody ([email protected]) with your suggestions or corrections. |