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Frankenreiter, L., Gahr, B. M., Schmid, H., Zimmermann, M., Deichsel, S., Hoffmeister, P., Turkiewicz, A., Borggrefe, T., Oswald, F. and Nagel, A. C. (2021). Phospho-Site Mutations in Transcription Factor Suppressor of Hairless Impact Notch Signaling Activity During Hematopoiesis in Drosophila. Front Cell Dev Biol 9: 658820. PubMed ID: 33937259 Gahr, B. M., Brandle, F., Zimmermann, M. and Nagel, A. C. (2019). An RBPJ-Drosophila model reveals dependence of RBPJ protein stability on the formation of transcription-regulator complexes. Cells 8(10). PubMed ID: 31615108 Kober, L., Zimmermann, M., Kurz, M., Bayer, M. and Nagel, A. C. (2019). Loss of putzig in the germline impedes germ cell development by inducing cell death and new niche like microenvironments. Sci Rep 9(1): 9108. PubMed ID: 31235815 Bayer, F. E., Zimmermann, M., Preiss, A. and Nagel, A. C. (2018). Overexpression of the Drosophila ATR homologous checkpoint kinase Mei-41 induces a G2/M checkpoint in Drosophila imaginal tissue. Hereditas 155: 27. PubMed ID: 30202398 Bayer, F. E., Zimmermann, M., Fischer, P., Gromoll, C., Preiss, A. and Nagel, A. C. (2017). p53 and cyclin G cooperate in mediating genome stability in somatic cells of Drosophila. Sci Rep 7(1): 17890. PubMed ID: 29263364 Fischer, P., Preiss, A. and Nagel, A. C. (2016). A triangular connection between Cyclin G, PP2A and Akt1 in the regulation of growth and metabolism in Drosophila. Fly (Austin): [Epub ahead of print]. PubMed ID: 26980713 Fischer, P., La Rosa, M.K., Schulz, A., Preiss, A. and Nagel, A.C. (2015). Cyclin G functions as a positive regulator of growth and metabolism in Drosophila. PLoS Genet 11: e1005440. PubMed ID: 26274446 Zimmermann, M., Kugler, S.J., Schulz, A. and Nagel, A.C. (2015). Loss of putzig activity results in apoptosis during wing imaginal development in Drosophila. PLoS One 10: e0124652. PubMed ID: 25894556 Fulterer, A., Andlauer, T. F. M., Ender, A., Maglione, M., Eyring, K., Woitkuhn, J., Lehmann, M., Matkovic-Rachid, T., Geiger, J. R. P., Walter, A. M., Nagel, K. I. and Sigrist, S. J. (2018). Active Zone Scaffold Protein Ratios Tune Functional Diversity across Brain Synapses. Cell Rep 23(5): 1259-1274. PubMed ID: 29719243 Nagel, K. I. and Wilson, R. I. (2016). Mechanisms Underlying Population Response Dynamics in Inhibitory Interneurons of the Drosophila Antennal Lobe. J Neurosci 36(15): 4325-4338. PubMed ID: 27076428 Gaudry, Q., Nagel, K. I. and Wilson, R. I. (2012). Smelling on the fly: sensory cues and strategies for olfactory navigation in Drosophila. Curr Opin Neurobiol 22(2): 216-222. PubMed ID: 22221864 Almeida, M. P., Lago Solis, B., Stickley, L., Feidler, A. and Nagoshi, E. (2021). Neurofibromin 1 in mushroom body neurons mediates circadian wake drive through activating cAMP-PKA signaling. Nat Commun 12(1): 5758. PubMed ID: 34599173 Kozlov, A., Koch, R. and Nagoshi, E. (2020). Nitric oxide mediates neuro-glial interaction that shapes Drosophila circadian behavior. PLoS Genet 16(6): e1008312. PubMed ID: 32598344 Sabado, V., Vienne, L. and Nagoshi, E. (2017). Evaluating the autonomy of the Drosophila circadian clock in dissociated neuronal culture. Front Cell Neurosci 11: 317. PubMed ID: 29075180 Kozlov, A., Jaumouille, E., Machado Almeida, P., Koch, R., Rodriguez, J., Abruzzi, K. C. and Nagoshi, E. (2017). A screening of UNF targets identifies Rnb, a novel regulator of Drosophila circadian rhythms. J Neurosci. PubMed ID: 28592698 Sabado, V., Vienne, L., Nunes, J. M., Rosbash, M. and Nagoshi, E. (2017). Fluorescence circadian imaging reveals a PDF-dependent transcriptional regulation of the Drosophila molecular clock. Sci Rep 7: 41560. PubMed ID: 28134281 Jaumouille, E., Machado Almeida, P., Stahli, P., Koch, R. and Nagoshi, E. (2015). Transcriptional Regulation via Nuclear Receptor Crosstalk Required for the Drosophila Circadian Clock. Curr Biol 25: 1502-1508. PubMed ID: 26004759 Abruzzi, K., Chen, X., Nagoshi, E., Zadina, A. and Rosbash, M. (2015). RNA-seq profiling of small numbers of Drosophila neurons. Methods Enzymol 551: 369-386. PubMed ID: 25662465 Beuchle, D., Jaumouille, E. and Nagoshi, E. (2012). The nuclear receptor unfulfilled is required for free-running clocks in Drosophila pacemaker neurons. Curr Biol 22: 1221-1227. PubMed ID: 22658597 Ly, S., Strus, E. and Naidoo, N. (2019). Genetic disruption of the putative binding site for Homer on DmGluRA reduces sleep in Drosophila. Sleep. PubMed ID: 31418019 Ly, S. and Naidoo, N. (2019). Loss of DmGluRA exacerbates age-related sleep disruption and reduces lifespan. Neurobiol Aging 80: 83-90. PubMed ID: 31103635 Brown, M. K., Chan, M. T., Zimmerman, J. E., Pack, A. I., Jackson, N. E. and Naidoo, N. (2013). Aging induced endoplasmic reticulum stress alters sleep and sleep homeostasis. Neurobiol Aging. PubMed ID: 24444805 Naidoo, N., Ferber, M., Galante, R. J., McShane, B., Hu, J. H., Zimmerman, J., Maislin, G., Cater, J., Wyner, A., Worley, P. and Pack, A. I. (2012). Role of Homer proteins in the maintenance of sleep-wake states. PLoS One 7: e35174. PubMed ID: 22532843 Asaoka, M., Hanyu-Nakamura, K., Nakamura, A. and Kobayashi, S. (2019). Maternal Nanos inhibits Importin-alpha2/Pendulin-dependent nuclear import to prevent somatic gene expression in the Drosophila germline. PLoS Genet 15(5): e1008090. PubMed ID: 30890569 Shiratsuchi, A., Nitta, M., Kuroda, A., Komiyama, C., Gawasawa, M., Shimamoto, N., Tuan, T. Q., Morita, T., Aiba, H. and Nakanishi, Y. (2016). Inhibition of phagocytic killing of Escherichia coli in Drosophila hemocytes by RNA chaperone Hfq. J Immunol [Epub ahead of print]. PubMed ID: 27357148 Tung, T. T., Nagaosa, K., Fujita, Y., Kita, A., Mori, H., Okada, R., Nonaka, S., Nakanishi, Y. (2013) Phosphatidylserine recognition and induction of apoptotic cell clearance by Drosophila engulfment receptor Draper. J Biochem. PubMed ID: 23420848 Nonaka, S., Nagaosa, K., Mori, T., Shiratsuchi, A., Nakanishi, Y. (2013) Integrin alphaPS3/betanu-Mediated Phagocytosis of Apoptotic Cells and Bacteria in Drosophila. J Biol Chem. PubMed ID: 23426364 Fujita, Y., Nagaosa, K., Shiratsuchi, A., Nakanishi, Y. (2012) Role of NPxY motif in Draper-mediated apoptotic cell clearance in Drosophila. Drug Discov Ther 6: 291-297. PubMed ID: 23337816 Shiratsuchi, A., Mori, T., Sakurai, K., Nagaosa, K., Sekimizu, K., Lee, B. L. and Nakanishi, Y. (2012). Independent recognition of Staphylococcus aureus by two receptors for phagocytosis in Drosophila. J Biol Chem 287: 21663-21672. PubMed ID: 22547074 Okada, R., Nagaosa, K., Kuraishi, T., Nakayama, H., Yamamoto, N., Nakagawa, Y., Dohmae, N., Shiratsuchi, A. and Nakanishi, Y. (2012). Apoptosis-dependent externalization and involvement in apoptotic cell clearance of DmCaBP1, an endoplasmic reticulum protein of Drosophila. J Biol Chem 287: 3138-3146. PubMed ID: 22158613 Takemura, M., Bowden, N., Lu, Y. S., Nakato, E., O'Connor, M. B. and Nakato, H. (2021). Drosophila MOV10 regulates the termination of midgut regeneration. Genetics. PubMed ID: 33693718 Takemura, M., Noborn, F., Nilsson, J., Bowden, N., Nakato, E., Baker, S., Su, T. Y., Larson, G. and Nakato, H. (2020). Chondroitin sulfate proteoglycan Windpipe modulates Hedgehog signaling in Drosophila. Mol Biol Cell: mbcE19060327. PubMed ID: 32049582 Kanai, M. I., Kim, M. J., Akiyama, T., Takemura, M., Wharton, K., O'Connor, M. B. and Nakato, H. (2018). Regulation of neuroblast proliferation by surface glia in the Drosophila larval brain. Sci Rep 8(1): 3730. PubMed ID: 29487331 Levings, D. C. and Nakato, H. (2017). Loss of heparan sulfate in the niche leads to tumor-like germ cell growth in the Drosophila testis. Glycobiology. PubMed ID: 29069438 Takemura, M. and Nakato, H. (2016). Drosophila Sulf1 is required for the termination of intestinal stem cell division during regeneration. J Cell Sci [Epub ahead of print]. PubMed ID: 27888216 Levings, D. C., Arashiro, T. and Nakato, H. (2016). Heparan sulfate regulates the number and centrosome positioning of Drosophila male germline stem cells. Mol Biol Cell [Epub ahead of print]. PubMed ID: 26792837 Dejima, K., Takemura, M., Nakato, E., Peterson, J., Hayashi, Y., Kinoshita-Toyoda, A., Toyoda, H. and Nakato, H. (2013). Analysis of Drosophila glucuronyl C-5 epimerase: implications for developmental roles of heparan sulfate sulfation compensation and 2-O sulfated glucuronic acid. J Biol Chem. PubMed ID: 24133213 Nakaya, T., Ishiguro, K. I., Belzil, C., Rietsch, A. M., Yu, Q., Mizuno, S. I., Bronson, R. T., Geng, Y., Nguyen, M. D., Akashi, K., Sicinski, P. and Nakatani, Y. (2013). p600 Plays Essential Roles in Fetal Development. PLoS One 8: e66269. PubMed ID: 23824717 Dejima, K., Kleinschmit, A., Takemura, M., Choi, P. Y., Kinoshita-Toyoda, A., Toyoda, H., Nakato, H. (2013) The role of Drosophila heparan sulfate 6-O endosulfatase in sulfation compensation. J Biol Chem. PubMed ID: 23339195 Mui, U. N., Lubczyk, C. M. and Nam, S. C. (2011). Role of spectraplakin in Drosophila photoreceptor morphogenesis. PLoS One 6: e25965. PubMed ID: 22022483 League, G. P. and Nam, S. C. (2011). Role of kinesin heavy chain in Crumbs localization along the rhabdomere elongation in Drosophila photoreceptor. PLoS One 6: e21218. PubMed ID: 21695062 Chen, G., Rogers, A. K., League, G. P. and Nam, S. C. (2011). Genetic interaction of centrosomin and bazooka in apical domain regulation in Drosophila photoreceptor. PLoS One 6: e16127. PubMed ID: 21253601 Melnattur, K. V., Berdnik, D., Rusan, Z., Ferreira, C. J. and Nambu, J. R. (2012). The sox gene Dichaete is expressed in local interneurons and functions in development of the Drosophila adult olfactory circuit. Dev. Neurobiol. [Epub ahead of print]. PubMed ID: 22648855 Kester, R. S. and Nambu, J. R. (2011). Targeted expression of p35 reveals a role for caspases in formation of the adult abdominal cuticle in Drosophila. Int J Dev Biol 55: 109-119. PubMed ID: 21425087 Schreader, B. A., Wang, Y., Carter, S., Grigas, J. and Nambu, J. R. (2010). Drosophila morgue influences cell numbers and positions in the embryonic nervous system. Int J Dev Biol 54: 1425-1433. PubMed ID: 21302253 Mutsuddi, M., Mukherjee, A., Shen, B., Manley, J. L. and Nambu, J. R. (2010). Drosophila Pelle phosphorylates Dichaete protein and influences its subcellular distribution in developing oocytes. Int J Dev Biol 54: 1309-1315. PubMed ID: 20563992 Muliyil, S. and Narasimha, M. (2014). Mitochondrial ROS Regulates Cytoskeletal and Mitochondrial Remodeling to Tune Cell and Tissue Dynamics in a Model for Wound Healing. Dev Cell. PubMed ID: 24486154 Schafer, G., Narasimha, M., Vogelsang, E. and Leptin, M. (2014). Cadherin switching during the formation and differentiation of the Drosophila mesoderm: implications for epithelial mesenchymal transitions. J Cell Sci. PubMed ID: 24496448 Oliveira, R. A. and Nasmyth, K. (2013). Cohesin cleavage is insufficient for centriole disengagement in Drosophila. Curr Biol 23: R601-603. PubMed ID: 23885871 Eichinger, C. S., Kurze, A., Oliveira, R. A., Nasmyth, K. (2013) Disengaging the Smc3/kleisin interface releases cohesin from Drosophila chromosomes during interphase and mitosis. EMBO J. PubMed ID: 23340528 Nasmyth, K. and Oliveira, R. A. (2010). Splitting the nucleus: what's wrong with the tripartite ring model? Cold Spring Harb Symp Quant Biol 75: 375-388. PubMed ID: 21209385 Pauli, A., van Bemmel, J. G., Oliveira, R. A., Itoh, T., Shirahige, K., van Steensel, B. and Nasmyth, K. (2010). A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands. Curr Biol 20: 1787-1798. PubMed ID: 20933422 Oliveira, R. A., Hamilton, R. S., Pauli, A., Davis, I. and Nasmyth, K. (2010). Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei. Nat Cell Biol 12: 185-192. PubMed ID: 20081838 Liao, S., Amcoff, M. and Nassel, D. R. (2020). Impact of high-fat diet on lifespan, metabolism, fecundity and behavioral senescence in Drosophila. Insect Biochem Mol Biol: 103495. PubMed ID: 33171202 Liao, S. and Nassel, D. R. (2020). Drosophila Insulin-Like Peptide 8 (DILP8) in Ovarian Follicle Cells Regulates Ovulation and Metabolism. Front Endocrinol (Lausanne) 11: 461. PubMed ID: 32849266 Liao, S., Post, S., Lehmann, P., Veenstra, J. A., Tatar, M. and Nassel, D. R. (2020). Regulatory Roles of Drosophila Insulin-Like Peptide 1 (DILP1) in Metabolism Differ in Pupal and Adult Stages. Front Endocrinol (Lausanne) 11: 180. PubMed ID: 32373064 Zandawala, M., Yurgel, M. E., Texada, M. J., Liao, S., Rewitz, K. F., Keene, A. C. and Nassel, D. R. (2018). Modulation of Drosophila post-feeding physiology and behavior by the neuropeptide leucokinin. PLoS Genet 14(11): e1007767. PubMed ID: 30457986 Galikova, M., Dircksen, H. and Nassel, D. R. (2018). The thirsty fly: Ion transport peptide (ITP) is a novel endocrine regulator of water homeostasis in Drosophila. PLoS Genet 14(8): e1007618. PubMed ID: 30138334 Zandawala, M., Marley, R., Davies, S. A. and Nassel, D. R. (2017). Characterization of a set of abdominal neuroendocrine cells that regulate stress physiology using colocalized diuretic peptides in Drosophila. Cell Mol Life Sci. PubMed ID: 29043393 Liao, S., Broughton, S. and Nassel, D. R. (2017). Behavioral senescence and aging-related changes in motor neurons and brain neuromodulator levels are ameliorated by lifespan-extending reproductive dormancy in Drosophila. Front Cell Neurosci 11: 111. PubMed ID: 28503133 Kubrak, O. I., Kucerova, L., Theopold, U., Nylin, S. and Nassel, D. R. (2016). Characterization of reproductive dormancy in male Drosophila melanogaster. Front Physiol 7: 572. PubMed ID: 27932997 Kubrak, O. I., Lushchak, O. V., Zandawala, M. and Nassel, D. R. (2016). Systemic corazonin signalling modulates stress responses and metabolism in Drosophila. Open Biol 6. PubMed ID: 27810969 Argue, K. J. and Neckameyer, W. S. (2014). Altering the Sex Determination Pathway in Drosophila Fat Body Modifies Sex-Specific Stress Responses. Am J Physiol Regul Integr Comp Physiol. PubMed ID: 24789992 Bhatt, P. K. and Neckameyer, W. S. (2013). Functional analysis of the larval feeding circuit in Drosophila. J Vis Exp. PubMed ID: 24300174 Argue, K. J. and Neckameyer, W. S. (2013). Sexually dimorphic recruitment of dopamine neurons into the stress response circuitry. Behav Neurosci 127: 734-743. PubMed ID: 24128361 Argue, K. J., Yun, A. J. and Neckameyer, W. S. (2013). Early manipulation of juvenile hormone has sexually dimorphic effects on mature adult behavior in Drosophila melanogaster. Horm Behav. PubMed ID: 24012944 Argue, K. J. and Neckameyer, W. S. (2013). Temporally Dimorphic Recruitment of Dopamine Neurons into Stress Response Circuitry in Drosophila. Behav Neurosci. PubMed ID: 23895060 Neckameyer, W. S. and Argue, K. J. (2013). Comparative approaches to the study of physiology: Drosophila as a physiological tool. Am J Physiol Regul Integr Comp Physiol 304: R177-188. PubMed ID: 23220476 Neckameyer, W. S. and Bhatt, P. (2012). Neurotrophic actions of dopamine on the development of a serotonergic feeding circuit in Drosophila melanogaster. BMC Neurosci 13: 26. PubMed ID: 22413901 Khuong, T. M., Hamoudi, Z., Manion, J., Loo, L., Muralidharan, A. and Neely, G. G. (2019). Peripheral straightjacket (alpha2delta Ca(2+) channel subunit) expression is required for neuropathic sensitization in Drosophila. Philos Trans R Soc Lond B Biol Sci 374(1785): 20190287. PubMed ID: 31544607 Khuong, T. M., Wang, Q. P., Manion, J., Oyston, L. J., Lau, M. T., Towler, H., Lin, Y. Q. and Neely, G. G. (2019). Nerve injury drives a heightened state of vigilance and neuropathic sensitization in Drosophila. Sci Adv 5(7): eaaw4099. PubMed ID: 31309148 May, C. E., Vaziri, A., Lin, Y. Q., Grushko, O., Khabiri, M., Wang, Q. P., Holme, K. J., Pletcher, S. D., Freddolino, P. L., Neely, G. G. and Dus, M. (2019). High Dietary Sugar Reshapes Sweet Taste to Promote Feeding Behavior in Drosophila melanogaster. Cell Rep 27(6): 1675-1685 e1677. PubMed ID: 31067455 Mauvezin, C. and Neufeld, T. P. (2015). Bafilomycin A disrupts autophagic flux by inhibiting both V-ATPase-dependent acidification and Ca-P60A/SERCA-dependent autophagosome-lysosome fusion. Autophagy: [Epub ahead of print]. PubMed ID: 26156798 Mauvezin, C., Nagy, P., Juhasz, G. and Neufeld, T. P. (2015). Autophagosome-lysosome fusion is independent of V-ATPase-mediated acidification. Nat Commun 6: 7007. PubMed ID: 25959678 Kim, J. and Neufeld, T.P. (2015). Dietary sugar promotes systemic TOR activation in Drosophila through AKH-dependent selective secretion of Dilp3. Nat Commun 6: 6846. PubMed ID: 25882208 Mauvezin, C., Ayala, C., Braden, C. R., Kim, J. and Neufeld, T. P. (2014). Assays to monitor autophagy in Drosophila. Methods. PubMed ID: 24667416 Dimitroff, B., Howe, K., Watson, A., Campion, B., Lee, H. G., Zhao, N., O'Connor, M. B., Neufeld, T. P. and Selleck, S. B. (2012). Diet and energy-sensing inputs affect TorC1-mediated axon misrouting but not TorC2-directed synapse growth in a Drosophila model of tuberous sclerosis. PLoS One 7: e30722. PubMed ID: 22319582 Chang, Y. Y. and Neufeld, T. P. (2010). Autophagy takes flight in Drosophila. FEBS Lett 584: 1342-1349. PubMed ID: 20079355 Deng, Y., Zhang, W., Farhat, K., Oberland, S., Gisselmann, G. and Neuhaus, E. M. (2011). The stimulatory Galpha(s) protein is involved in olfactory signal transduction in Drosophila. PLoS One 6: e18605. PubMed ID: 21490930 Bredendiek, N., Hutte, J., Steingraber, A., Hatt, H., Gisselmann, G. and Neuhaus, E. M. (2011). Go alpha is involved in sugar perception in Drosophila. Chem Senses 36: 69-81. PubMed ID: 20940344 Towler, B. P., Jones, C. I., Harper, K. L., Waldron, J. A. and Newbury, S. F. (2016). A novel role for the 3'-5' exoribonuclease Dis3L2 in controlling cell proliferation and tissue growth. RNA Biol [Epub ahead of print]. PubMed ID: 27630034 Towler, B. P., Jones, C. I., Viegas, S. C., Apura, P., Waldron, J. A., Smalley, S. K., Arraiano, C. M. and Newbury, S. F. (2015). The 3'-5' exoribonuclease Dis3 regulates the expression of specific microRNAs in Drosophila wing imaginal discs. RNA Biol [Epub ahead of print]. PubMed ID: 25892215 Jones, C. I., Grima, D. P., Waldron, J. A., Jones, S., Parker, H. N. and Newbury, S. F. (2013). The 5'-3' exoribonuclease Pacman (Xrn1) regulates expression of the heat shock protein Hsp67Bc and the microRNA miR-277-3p in Drosophila wing imaginal discs. RNA Biol 10: 1345-1355. PubMed ID: 23792537 Waldron, J. A. and Newbury, S. F. (2012). The roles of miRNAs in wing imaginal disc development in Drosophila. Biochem Soc Trans 40: 891-895. PubMed ID: 22817754 Nguyen, T. H., Han, T. H., Newfeld, S. J. and Serpe, M. (2020). Selective Disruption of Synaptic BMP Signaling by a Smad Mutation Adjacent to the Highly Conserved H2 Helix. Genetics. PubMed ID: 32737119 Dimitriadou, A., Chatzianastasi, N., Zacharaki, P. I., O'Connor, M., Goldsmith, S. L., O'Connor, M. B., Consoulas, C. and Newfeld, S. J. (2020). Adult Movement Defects Associated with a CORL Mutation in Drosophila Display Behavioral Plasticity. G3 (Bethesda). PubMed ID: 32161085 Stinchfield, M. J., Miyazawa, K. and Newfeld, S. J. (2019). Transgenic analyses in Drosophila reveal that mCORL1 is functionally distinct from mCORL2 and dCORL. G3 (Bethesda). PubMed ID: 31530634 Tran, N. L., Takaesu, N. T., Cornell, E. F. and Newfeld, S. J. (2018). CORL expression in the Drosophila central nervous system is regulated by stage specific interactions of intertwined activators and repressors. G3 (Bethesda). Pubmed ID: 29848623 Kumar, S., Konikoff, C., Sanderford, M., Liu, L., Newfeld, S., Ye, J. and Kulathinal, R. J. (2017). FlyExpress 7: An Integrated Discovery Platform To Study Co-expressed Genes Using In Situ Hybridization Images in Drosophila. G3 (Bethesda). PubMed ID: 28667017 Quijano, J.C., Wisotzkey, R.G., Tran, N.L., Huang, Y., Stinchfield, M.J., Haerry, T.E., Shimmi, O. and Newfeld, S.J. (2016). lolal is an evolutionarily new epigenetic regulator of dpp transcription during dorsal-ventral axis formation. Mol Biol Evol [Epub ahead of print]. PubMed ID: 27401231 Wisotzkey, R. G., Quijano, J. C., Stinchfield, M. J. and Newfeld, S. J. (2014). New gene evolution in the Bonus-TIF1-gamma/TRIM33 family impacted the architecture of the vertebrate dorsal-ventral patterning network. Mol Biol Evol. PubMed ID: 24881051 Zhang, W., Feng, D., Li, R., Chernikov, A., Chrisochoides, N., Osgood, C., Konikoff, C., Newfeld, S., Kumar, S. and Ji, S. (2013). A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis. BMC Bioinformatics 14: 372. PubMed ID: 24373308 Sun, Q., Muckatira, S., Yuan, L., Ji, S., Newfeld, S., Kumar, S. and Ye, J. (2013). Image-level and group-level models for Drosophila gene expression pattern annotation. BMC Bioinformatics 14: 350. PubMed ID: 24299119 Braden, C. R. and Neufeld, T. P. (2016). Atg1-independent induction of autophagy by the Drosophila Ulk3 homolog, ADUK. FEBS J [Epub ahead of print]. PubMed ID: 27717182 Mauvezin, C., Neisch, A. L., Ayala, C. I., Kim, J., Beltrame, A., Braden, C. R., Gardner, M. K., Hays, T. S. and Neufeld, T. P. (2016). Coordination of autophagosome-lysosome fusion and transport by a Klp98A-Rab14 complex. J Cell Sci [Epub ahead of print]. PubMed ID: 26763909 Jin, A., Neufeld, T. P. and Choe, J. (2015). Kibra and aPKC regulate starvation-induced autophagy in Drosophila. Biochem Biophys Res Commun 468: 1-7. PubMed ID: 26551466 Kim, J. and Neufeld, T. P. (2015). Dietary sugar promotes systemic TOR activation in Drosophila through AKH-dependent selective secretion of Dilp3. Nat Commun 6: 6846. PubMed ID: 25882208 Mauvezin, C., Ayala, C., Braden, C. R., Kim, J. and Neufeld, T. P. (2014). Assays to monitor autophagy in Drosophila. Methods 68: 134-139. PubMed ID: 24667416 Dimitroff, B., Howe, K., Watson, A., Campion, B., Lee, H. G., Zhao, N., O'Connor, M. B., Neufeld, T. P. and Selleck, S. B. (2012). Diet and energy-sensing inputs affect TorC1-mediated axon misrouting but not TorC2-directed synapse growth in a Drosophila model of tuberous sclerosis. PLoS One 7: e30722. PubMed ID: 22319582 Tsapras, P. and Nezis, I. P. (2022). A yeast two-hybrid screening identifies novel Atg8a interactors in Drosophila. Autophagy 18(5): 1211-1212. PubMed ID: 35226578 Petridi, S., Jacomin, A. C., Bhujabal, Z., Johansen, T. and Nezis, I. P. (2021). Exploring selective autophagy in Drosophila: Methods to identify Atg8-interacting proteins. Methods Cell Biol 165: 13-29. PubMed ID: 34311862 Jacomin, A. C., Gohel, R., Hussain, Z., Varga, A., Maruzs, T., Eddison, M., Sica, M., Jain, A., Moffat, K. G., Johansen, T., Jenny, A., Juhasz, G. and Nezis, I. P. 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Development 140: 4490-4498. PubMed ID: 24131631 |