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Li, R., Yao, X., Zhou, H., Jin, P. and Ma, F. (2021). The Drosophila miR-959-962 Cluster Members Repress Toll Signaling to Regulate Antibacterial Defense during Bacterial Infection. Int J Mol Sci 22(2). PubMed ID: 33477373 Li, R., Zhou, H., Jia, C., Jin, P. and Ma, F. (2020). Drosophila Myc restores immune homeostasis of Imd pathway via activating miR-277 to inhibit imd/Tab2. PLoS Genet 16(8): e1008989. PubMed ID: 32810129 Li, R., Huang, Y., Zhang, Q., Zhou, H., Jin, P. and Ma, F. (2019). The miR-317 functions as a negative regulator of Toll immune response and influences Drosophila survival. Dev Comp Immunol 95: 19-27. PubMed ID: 30708026 Li, S., Xu, J., Sun, L., Li, R., Jin, P. and Ma, F. (2017). Drosophila miR-964 modulates Toll signaling pathway in response to bacterial infection. Dev Comp Immunol 77: 252-258. PubMed ID: 28823799 Li, S., Shen, L., Sun, L., Xu, J., Jin, P., Chen, L. and Ma, F. (2017). Small RNA-Seq analysis reveals microRNA-regulation of the Imd pathway during Escherichia coli infection in Drosophila. Dev Comp Immunol [Epub ahead of print]. PubMed ID: 28069431 Li, S., Li, Y., Shen, L., Jin, P., Chen, L. and Ma, F. (2017). miR-958 inhibits Toll signaling and Drosomycin expression via direct targeting of Toll and Dif in Drosophila melanogaster. Am J Physiol Cell Physiol 312(2): C103-C110. PubMed ID: 27974298 Li, Y., Li, S., Li, R., Xu, J., Jin, P., Chen, L. and Ma, F. (2017). Genome-wide miRNA screening reveals miR-310 family members negatively regulate the immune response in Drosophila melanogaster via co-targeting Drosomycin. Dev Comp Immunol 68: 34-45. PubMed ID: 27871832 Li, Y., Li, S., Jin, P., Chen, L. and Ma, F. (2017). miR-11 regulates pupal size of Drosophila melanogaster via directly targeting Ras85D. Am J Physiol Cell Physiol 312(1): C71-C82. PubMed ID: 27733364 Wu, H., Manu, Jiao, R. and Ma, J. (2015). Temporal and spatial dynamics of scaling-specific features of a gene regulatory network in Drosophila. Nat Commun 6: 10031. PubMed ID: 26644070 Liu, J. and Ma, J. (2015). Modulation of temporal dynamics of gene transcription by activator potency in the Drosophila embryo. Development [Epub ahead of print]. PubMed ID: 26395487 Cheung, D. and Ma, J. (2015). Probing the impact of temperature on molecular events in a developmental system. Sci Rep 5: 13124. PubMed ID: 26286011 He, F., Wei, C., Wu, H., Cheung, D., Jiao, R. and Ma, J. (2015). Fundamental origins and limits for scaling a maternal morphogen gradient. Nat Commun 6: 6679. PubMed ID: 25809405 Liu, J. and Ma, J. (2013). Dampened regulates the activating potency of Bicoid and the embryonic patterning outcome in Drosophila. Nat Commun 4: 2968. PubMed ID: 24336107 Cheung, D., Miles, C., Kreitman, M. and Ma, J. (2013). Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos. Development. PubMed ID: 24284208 Liu, J. and Ma, J. (2013). Uncovering a dynamic feature of the transcriptional regulatory network for anterior-posterior patterning in the Drosophila embryo. PLoS One 8: e62641. PubMed ID: 23646132 He, F., Ma, J. (2013) A spatial point pattern analysis in Drosophila blastoderm embryos evaluating the potential inheritance of transcriptional States. PLoS One 8: e60876. PubMed ID: 23593336 Kim, J. C., Nordman, J., Xie, F., Kashevsky, H., Eng, T., Li, S., MacAlpine, D. M. and Orr-Weaver, T. L. (2011). Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression. Genes Dev 25: 1384-1398. PubMed ID: 21724831 Negre, N., et al. (2011). A cis-regulatory map of the Drosophila genome. Nature 471: 527-531. PubMed ID: 21430782 Kharchenko, P. V., et al. (2011). Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471: 480-485. PubMed ID: 21179089 Mohr, S., Kenny, A., Lam, S. T. Y., Morgan, M. B., Smibert, C. A., Lipshitz, H. D. and Macdonald, P. M. (2021). Opposing roles for Egalitarian and Staufen in transport, anchoring and localization of oskar mRNA in the Drosophila oocyte. PLoS Genet 17(4): e1009500. PubMed ID: 33798193 Kenny, A., Morgan, M. B. and Macdonald, P. M. (2021). Different roles for the adjoining and structurally similar A-rich and poly(A) domains of oskar mRNA: Only the A-rich domain is required for oskar noncoding RNA function, which includes MTOC positioning. Dev Biol 476: 117-127. PubMed ID: 33798537 Everman, E. R., Cloud-Richardson, K. M. and Macdonald, S. J. (2021). Characterizing the genetic basis of copper toxicity in Drosophila reveals a complex pattern of allelic, regulatory, and behavioral variation. Genetics 217(1): 1-20. PubMed ID: 33683361 Everman, E. R., McNeil, C. L., Hackett, J. L., Bain, C. L. and Macdonald, S. J. (2019). Dissection of Complex, Fitness-Related Traits in Multiple Drosophila Mapping Populations Offers Insight into the Genetic Control of Stress Resistance. Genetics 211(4): 1449-1467. PubMed ID: 30760490 Ryu, Y. H., Kenny, A., Gim, Y., Snee, M. and Macdonald, P. M. (2017). Multiple cis-acting signals, some weak by necessity, collectively direct robust transport of oskar mRNA to the oocyte. J Cell Sci 130(18): 3060-3071. PubMed ID: 28760927 Highfill, C. A., Tran, J. H., Nguyen, S. K. T., Moldenhauer, T. R., Wang, X. and Macdonald, S. J. (2017). Naturally-segregating variation at Ugt86Dd contributes to nicotine resistance in Drosophila melanogaster. Genetics [Epub ahead of print]. PubMed ID: 28743761 Ryu, Y. H. and Macdonald, P. M. (2015). RNA sequences required for the noncoding function of oskar RNA also mediate regulation of Oskar protein expression by Bicoid Stability Factor. Dev Biol. PubMed ID: 26433064 Jones, J. and Macdonald, P.M. (2015). Neurl4 contributes to germ cell formation and integrity in Drosophila. Biol Open [Epub ahead of print]. PubMed ID: 26116656 Kanke, M. and Macdonald, P. M. (2015). Translational activation of Oskar mRNA: Reevaluation of the role and importance of a 5' regulatory element. PLoS One 10: e0125849. PubMed ID: 25938537 Kanke, M., Jambor, H., Reich, J., Marches, B., Gstir, R., Ryu, Y.H., Ephrussi, A. and Macdonald, P.M. (2015). oskar RNA plays multiple noncoding roles to support oogenesis and maintain integrity of the germline/soma distinction. RNA [Epub ahead of print]. PubMed ID: 25862242 Chakraborty, M., Emerson, J. J., Macdonald, S. J. and Long, A. D. (2019). Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits. Nat Commun 10(1): 4872. PubMed ID: 31653862 Everman, E. R., McNeil, C. L., Hackett, J. L., Bain, C. L. and Macdonald, S. J. (2019). Dissection of complex, fitness-related traits in multiple Drosophila mapping populations offers Insight into the genetic control of stress resistance. Genetics. PubMed ID: 30760490 Hackett, J. L., Wang, X., Smith, B. R. and Macdonald, S. J. (2016). Mapping QTL Contributing to Variation in Posterior Lobe Morphology between Strains of Drosophila melanogaster. PLoS One 11: e0162573. PubMed ID: 27606594 Cloud-Richardson, K. M., Smith, B. R. and Macdonald, S. J. (2016). Genetic dissection of intraspecific variation in a male-specific sexual trait in Drosophila melanogaster. Heredity (Edinb) [Epub ahead of print]. PubMed ID: 27530909 Marriage, T. N., King, E. G., Long, A. D. and Macdonald, S. J. (2014). Fine-mapping nicotine resistance Loci in Drosophila using a multiparent advanced generation inter-cross population. Genetics 198: 45-57. PubMed ID: 25236448 King, E. G., Sanderson, B. J., McNeil, C. L., Long, A. D. and Macdonald, S. J. (2014). Genetic Dissection of the Drosophila melanogaster Female Head Transcriptome Reveals Widespread Allelic Heterogeneity. PLoS Genet 10: e1004322. PubMed ID: 24810915 Cridland, J. M., Macdonald, S. J., Long, A. D. and Thornton, K. R. (2013). Abundance and distribution of transposable elements in two Drosophila QTL mapping resources. Mol Biol Evol 30: 2311-2327. PubMed ID: 23883524 Ozsoy, E. D., Yilmaz, M., Patlar, B., Emecen, G., Durmaz, E., Magwire, M. M., Zhou, S., Huang, W., Anholt, R. R. H. and Mackay, T. F. C. (2021). Epistasis for head morphology in Drosophila melanogaster. G3 (Bethesda) 11(10). PubMed ID: 34568933 Nazario-Yepiz, N. O., Fernandez Sobaberas, J., Lyman, R., Campbell, M. R., Shankar, V., Anholt, R. R. H. and Mackay, T. F. C. (2021). Physiological and metabolomic consequences of reduced expression of the Drosophila brummer triglyceride Lipase. PLoS One 16(9): e0255198. PubMed ID: 34547020 Mokashi, S. S., Shankar, V., MacPherson, R. A., Hannah, R. C., Mackay, T. F. C. and Anholt, R. R. H. (2021). Developmental Alcohol Exposure in Drosophila: Effects on Adult Phenotypes and Gene Expression in the Brain. Front Psychiatry 12: 699033. PubMed ID: 34366927 Tallo, C. A., Duncan, L. H., Yamamoto, A. H., Slaydon, J. D., Arya, G. H., Turlapati, L., Mackay, T. F. C. and Carbone, M. A. (2021). Heat shock proteins and small nucleolar RNAs are dysregulated in a Drosophila model for feline hypertrophic cardiomyopathy. G3 (Bethesda) 11(1). PubMed ID: 33561224 Johnstun, J. A., Shankar, V., Mokashi, S. S., Sunkara, L. T., Ihearahu, U. E., Lyman, R. L., Mackay, T. F. C. and Anholt, R. R. H. (2021). Functional Diversification, Redundancy and Epistasis among Paralogs of the Drosophila melanogaster Obp50a-d Gene Cluster. Mol Biol Evol. PubMed ID: 33560417 Morgante, F., Huang, W., Sørensen, P., Maltecca, C. and Mackay, T. F. C. (2020). Leveraging multiple layers of data to predict Drosophila complex traits. G3 (Bethesda). PubMed ID: 33106232 Huang, W., Carbone, M. A., Lyman, R. F., Anholt, R. R. H. and Mackay, T. F. C. (2020). Genotype by environment interaction for gene expression in Drosophila melanogaster. Nat Commun 11(1): 5451. PubMed ID: 33116142 Yanagawa, A., Huang, W., Yamamoto, A., Wada-Katsumata, A., Schal, C. and Mackay, T. F. C. (2020). Genetic Basis of Natural Variation in Spontaneous Grooming in Drosophila melanogaster. G3 (Bethesda). PubMed ID: 32727922 Huang, W., Campbell, T., Carbone, M. A., Jones, W. E., Unselt, D., Anholt, R. R. H. and Mackay, T. F. C. (2020). Context-dependent genetic architecture of Drosophila life span. PLoS Biol 18(3): e3000645. PubMed ID: 32134916 Everett, L. J., Huang, W., Zhou, S., Carbone, M. A., Lyman, R. F., Arya, G. H., Geisz, M. S., Ma, J., Morgante, F., St Armour, G., Turlapati, L., Anholt, R. R. H. and Mackay, T. F. C. (2020). Gene expression networks in the Drosophila Genetic Reference Panel. Genome Res. PubMed ID: 32144088 Parker, G. A., Kohn, N., Spirina, A., McMillen, A., Huang, W. and Mackay, T. F. C. (2020). Genetic Basis of Increased Lifespan and Postponed Senescence in Drosophila melanogaster. G3 (Bethesda). PubMed ID: 31969430 Feghhi, T., Hernandez, R. X., Stawarski, M., Thomas, C. I., Kamasawa, N., Lau, A. W. C. and Macleod, G. T. (2021). Computational modeling predicts ephemeral acidic microdomains followed by prolonged alkalinization in the glutamatergic synaptic cleft. Biophys J. PubMed ID: 34774503 Stawarski, M., Hernandez, R. X., Feghhi, T., Borycz, J. A., Lu, Z., Agarwal, A., Reihl, K., Tavora, R., Lau, A. W. C., Meinertzhagen, I. A., Renden, R. and Macleod, G. T. (2020). Neuronal glutamatergic synaptic clefts alkalinize rather than acidify during neurotransmission. J Neurosci. PubMed ID: 31964719 Lu, Z., Chouhan, A. K., Borycz, J. A., Lu, Z., Rossano, A. J., Brain, K. L., Zhou, Y., Meinertzhagen, I. A. and Macleod, G. T. (2016). High-probability neurotransmitter release sites represent an energy-efficient design. Curr Biol 26: 2562-2571. PubMed ID: 27593375 Rossano, A. J., Kato, A., Minard, K. I., Romero, M. F. and Macleod, G. T. (2016). Na+ /H+ -exchange via the Drosophila vesicular glutamate transporter (DVGLUT) mediates activity-induced acid efflux from presynaptic terminals. J Physiol [Epub ahead of print]. PubMed ID: 27641622 Ivannikov, M. V. and Macleod, G. T. (2013). Mitochondrial free ca(2+) levels and their effects on energy metabolism in Drosophila motor nerve terminals. Biophys J 104: 2353-2361. PubMed ID: 23746507 Rossano, A. J., Chouhan, A. K. and Macleod, G. T. (2013). Genetically-Encoded pH-Indicators (GEpHIs) Reveal Activity-Dependent Cytosolic Acidification of Drosophila Motor Nerve Termini in vivo. J Physiol. PubMed ID: 23401611 Macleod, G. T. (2012). Forward-filling of dextran-conjugated indicators for calcium imaging at the Drosophila larval neuromuscular junction. Cold Spring Harb Protoc 2012: 791-796. PubMed ID: 22753611 El-Saadi, M. I., Ritchie, M. W., Davis, H. E. and MacMillan, H. A. (2020). Warm periods in repeated cold stresses protect Drosophila against ionoregulatory collapse, chilling injury, and reproductive deficits. J Insect Physiol 123: 104055. PubMed ID: 32380094 Livingston, D. B. H., Patel, H., Donini, A. and MacMillan, H. A. (2020). Active transport of brilliant blue FCF across the Drosophila midgut and Malpighian tubule epithelia. Comp Biochem Physiol A Mol Integr Physiol 239: 110588. PubMed ID: 31648063 MacMillan, H. A., Nazal, B., Wali, S., Yerushalmi, G. Y., Misyura, L., Donini, A. and Paluzzi, J. P. (2018). Anti-diuretic activity of a CAPA neuropeptide can compromise Drosophila chill tolerance. J Exp Biol 221(Pt 19). PubMed ID: 30104306 Yerushalmi, G. Y., Misyura, L., MacMillan, H. A. and Donini, A. (2018). Functional plasticity of the gut and the Malpighian tubules underlies cold acclimation and mitigates cold-induced hyperkalemia in Drosophila melanogaster. J Exp Biol 221(Pt 6). PubMed ID: 29367271 Immarigeon, C., Frei, Y., Delbare, S. Y. N., Gligorov, D., Machado Almeida, P., Grey, J., Fabbro, L., Nagoshi, E., Billeter, J. C., Wolfner, M. F., Karch, F. and Maeda, R. K. (2021). Identification of a micropeptide and multiple secondary cell genes that modulate Drosophila male reproductive success. Proc Natl Acad Sci U S A 118(15). PubMed ID: 33876742 Ishibashi, T., Hatori, R., Maeda, R., Nakamura, M., Taguchi, T., Matsuyama, Y. and Matsuno, K. (2019). E and ID proteins regulate cell chirality and left-right asymmetric development in Drosophila. Genes Cells 24(3): 214-230. PubMed ID: 30624823 Prince, E., Kroeger, B., Gligorov, D., Wilson, C., Eaton, S., Karch, F., Brankatschk, M. and Maeda, R. K. (2019). Rab-mediated trafficking in the secondary cells of Drosophila male accessory glands and its role in fecundity. Traffic 20(2): 137-151. PubMed ID: 30426623 Maharjan, M., Maeda, R. K., Karch, F. and Hart, C. M. (2018). Using a phiC31 "Disintegrase" to make new attP sites in the Drosophila genome at locations showing chromosomal position effects. PLoS One 13(10): e0205538. PubMed ID: 30296303 Fedotova, A., Aoki, T., Rossier, M., Mishra, R. K., Clendinen, C., Kyrchanova, O., Wolle, D., Bonchuk, A., Maeda, R. K., Mutero, A., Cleard, F., Mogila, V., Karch, F., Georgiev, P. and Schedl, P. (2018). The BEN Domain Protein Insensitive Binds to the Fab-7 Chromatin Boundary To Establish Proper Segmental Identity in Drosophila. Genetics 210(2): 573-585. PubMed ID: 30082280 Maeda, R. K., Sitnik, J. L., Frei, Y., Prince, E., Gligorov, D., Wolfner, M. F. and Karch, F. (2018). The lncRNA male-specific abdominal plays a critical role in Drosophila accessory gland development and male fertility. PLoS Genet 14(7): e1007519. PubMed ID: 30011265 Bughio, F., Huckell, G. R. and Maggert, K. A. (2019). Monitoring of switches in heterochromatin-induced silencing shows incomplete establishment and developmental instabilities. Proc Natl Acad Sci U S A 116(40): 20043-20053. PubMed ID: 31527269 Aldrich, J. C. and Maggert, K. A. (2015). Transgenerational inheritance of diet-induced genome rearrangements in Drosophila. PLoS Genet 11: e1005148. PubMed ID: 25885886 Aldrich, J. C. and Maggert, K. A. (2014). Simple quantitative PCR approach to reveal naturally occurring and mutation-induced repetitive sequence variation on the Drosophila Y chromosome. PLoS One 9: e109906. PubMed ID: 25285439 Maggert, K. A. (2014). Reduced rDNA copy number does not affect "competitive" chromosome pairing in XYY males of Drosophila melanogaster. G3 (Bethesda) 4: 497-507. PubMed ID: 24449686 Guerrero, P. A. and Maggert, K. A. (2011). The CCCTC-binding factor (CTCF) of Drosophila contributes to the regulation of the ribosomal DNA and nucleolar stability. PLoS One 6: e16401. PubMed ID: 21283722 Lerner, D. W., McCoy, D., Isabella, A. J., Mahowald, A. P., Gerlach, G. F., Chaudhry, T. A., Horne-Badovinac, S. (2013) A Rab10-Dependent Mechanism for Polarized Basement Membrane Secretion during Organ Morphogenesis. Dev Cell 24: 159-168. PubMed ID: 23369713 Srinivasan, S., Mahowald, A. P. and Fuller, M. T. (2012). The receptor tyrosine phosphatase Lar regulates adhesion between Drosophila male germline stem cells and the niche. Development 139: 1381-1390. PubMed ID: 22378638 Chatterjee, N., Rollins, J., Mahowald, A. P. and Bazinet, C. (2011). Neurotransmitter Transporter-Like: a male germline-specific SLC6 transporter required for Drosophila spermiogenesis. PLoS One 6: e16275. PubMed ID: 21298005 Lecland, N., Debec, A., Delmas, A., Moutinho-Pereira, S., Malmanche, N., Bouissou, A., Dupre, C., Jourdan, A., Raynaud-Messina, B., Maiato, H. and Guichet, A. (2013). Establishment and mitotic characterization of new Drosophila acentriolar cell lines from DSas-4 mutant. Biol Open 2: 314-323. PubMed ID: 23519377 Jana, S. C., Mendonca, S., Machado, P., Werner, S., Rocha, J., Pereira, A., Maiato, H. and Bettencourt-Dias, M. (2018). Differential regulation of transition zone and centriole proteins contributes to ciliary base diversity. Nat Cell Biol 20(8): 928-941. PubMed ID: 30013109 Drpic, D., Pereira, A. J., Barisic, M., Maresca, T. J. and Maiato, H. (2015). Polar ejection forces promote the conversion from lateral to end-on kinetochore-microtubule attachments on mono-oriented chromosomes. Cell Rep 13: 460-468. PubMed ID: 26456825 Schweizer, N., Pawar, N., Weiss, M. and Maiato, H. (2015). An organelle-exclusion envelope assists mitosis and underlies distinct molecular crowding in the spindle region. J Cell Biol 210: 695-704. PubMed ID: 26304726 Afonso, O., Matos, I., Pereira, A. J., Aguiar, P., Lampson, M. A. and Maiato, H. (2014). Feedback control of chromosome separation by a midzone Aurora B gradient. Science 345: 332-336. PubMed ID: 24925910 Moutinho-Pereira, S., Stuurman, N., Afonso, O., Hornsveld, M., Aguiar, P., Goshima, G., Vale, R. D. and Maiato, H. (2013). Genes involved in centrosome-independent mitotic spindle assembly in Drosophila S2 cells. Proc Natl Acad Sci U S A. PubMed ID: 24255106 Conde, C., Osswald, M., Barbosa, J., Moutinho-Santos, T., Pinheiro, D., Guimaraes, S., Matos, I., Maiato, H. and Sunkel, C. E. (2013). Drosophila Polo regulates the spindle assembly checkpoint through Mps1-dependent BubR1 phosphorylation. EMBO J 32: 1761-1777. PubMed ID: 23685359 Drpic, D., Barisic, M., Pinheiro, D. and Maiato, H. (2013). Selective tracking of template DNA strands after induction of mitosis with unreplicated genomes (MUGs) in Drosophila S2 cells. Chromosome Res 21: 329-337. PubMed ID: 23681663 Wolf, D., Smylla, T. K., Reichmuth, J., Hoffmeister, P., Kober, L., Zimmermann, M., Turkiewicz, A., Borggrefe, T., Nagel, A. C., Oswald, F., Preiss, A. and Maier, D. (2019). Nucleo-cytoplasmic shuttling of Drosophila Hairless/Su(H) heterodimer as a means of regulating Notch dependent transcription. Biochim Biophys Acta Mol Cell Res 1866(10): 1520-1532. PubMed ID: 31326540 Maier, D. (2019). The evolution of transcriptional repressors in the Notch signaling pathway: a computational analysis. Hereditas 156: 5. PubMed ID: 30679936 Smylla, T. K., Meier, M., Preiss, A. and Maier, D. (2019). The Notch repressor complex in Drosophila: in vivo analysis of Hairless mutants using overexpression experiments. Dev Genes Evol. PubMed ID: 30612166 Preiss, A., Nagel, A. C., Praxenthaler, H. and Maier, D. (2018). Complex genetic interactions of novel Suppressor of Hairless alleles deficient in co-repressor binding. PLoS One 13(3): e0193956. PubMed ID: 29509808 Praxenthaler, H., Nagel, A. C., Schulz, A., Zimmermann, M., Meier, M., Schmid, H., Preiss, A. and Maier, D. (2017). Hairless-binding deficient Suppressor of Hairless alleles reveal Su(H) protein levels are dependent on complex formation with Hairless. PLoS Genet 13(5): e1006774. PubMed ID: 28475577 Smylla, T.K., Preiss, A. and Maier, D. (2016). In vivo analysis of internal ribosome entry at the Hairless locus by genome engineering in Drosophila. Sci Rep 6: 34881. PubMed ID: 27713501 Yuan, Z., Praxenthaler, H., Tabaja, N., Torella, R., Preiss, A., Maier, D. and Kovall, R. A. (2016). Structure and Function of the Su(H)-Hairless Repressor Complex, the Major Antagonist of Notch Signaling in Drosophila melanogaster. PLoS Biol 14: e1002509. PubMed ID: 27404588 Praxenthaler, H., Smylla, T. K., Nagel, A. C., Preiss, A. and Maier, D. (2015). Generation of new hairless alleles by genomic engineering at the Hairless locus in Drosophila melanogaster. PLoS One 10: e0140007. PubMed ID: 26448463 Panneton, V., Nath, A., Sader, F., Delaunay, N., Pelletier, A., Maier, D., Oh, K. and Hipfner, D. R. (2015). Regulation of Catalytic and Non-catalytic Functions of the Drosophila Ste20 Kinase Slik by Activation Segment Phosphorylation. J Biol Chem 290: 20960-20971. PubMed ID: 26170449 Fenk, L. M., Kim, A. J. and Maimon, G. (2021). Suppression of motion vision during course-changing, but not course-stabilizing, navigational turns. Curr Biol. PubMed ID: 34644548 Green, J., Vijayan, V., Mussells Pires, P., Adachi, A. and Maimon, G. (2019). A neural heading estimate is compared with an internal goal to guide oriented navigation. Nat Neurosci. PubMed ID: 31332373 Ferris, B. D., Green, J. and Maimon, G. (2018). Abolishment of Spontaneous Flight Turns in Visually Responsive Drosophila. Curr Biol 28(2): 170-180.e175. PubMed ID: 29337081 Green, J., Adachi, A., Shah, K. K., Hirokawa, J. D., Magani, P. S. and Maimon, G. (2017). A neural circuit architecture for angular integration in Drosophila. Nature 546(7656): 101-106. PubMed ID: 28538731 Kim, A. J., Fenk, L. M., Lyu, C. and Maimon, G. (2017). Quantitative Predictions Orchestrate Visual Signaling in Drosophila. Cell 168(1-2): 280-294 e212. PubMed ID: 28065412 Kim, A. J., Fitzgerald, J. K. and Maimon, G. (2015). Cellular evidence for efference copy in Drosophila visuomotor processing. Nat Neurosci 18(9): 1247-1255. PubMed ID: 26237362 Ehaideb, S. N., Iyengar, A., Ueda, A., Iacobucci, G. J., Cranston, C., Bassuk, A. G., Gubb, D., Axelrod, J. D., Gunawardena, S., Wu, C. F. and Manak, J. R. (2014). prickle modulates microtubule polarity and axonal transport to ameliorate seizures in flies. Proc Natl Acad Sci U S A. PubMed ID: 25024231 Soshnev, A. A., Baxley, R. M., Manak, J. R., Tan, K. and Geyer, P. K. (2013). The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary. Development 140: 3613-3623. PubMed ID: 23884443 Pezzulo, A. A., Hornick, E. E., Rector, M. V., Estin, M., Reisetter, A. C., Taft, P. J., Butcher, S. C., Carter, A. B., Manak, J. R., Stoltz, D. A. and Zabner, J. (2012). Expression of human paraoxonase 1 decreases superoxide levels and alters bacterial colonization in the gut of Drosophila melanogaster. PLoS One 7: e43777. PubMed ID: 22952763 Kursel, L. E., McConnell, H., de la Cruz, A. F. A. and Malik, H. S. (2021). Gametic specialization of centromeric histone paralogs in Drosophila virilis. Life Sci Alliance 4(7). PubMed ID: 33986021 Kasinathan, B., Colmenares, S. U., 3rd, McConnell, H., Young, J. M., Karpen, G. H. and Malik, H. S. (2020). Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila. Elife 9. PubMed ID: 33169670 Kursel, L. E., Welsh, F. C. and Malik, H. S. (2020). Ancient co-retention of paralogs of Cid centromeric histones and Cal1 chaperones in mosquito species. Mol Biol Evol. PubMed ID: 32125433 Schroeder, C. M., Valenzuela, J. R., Natividad, I. M., Hocky, G. M. and Malik, H. S. (2019). A burst of genetic innovation in Drosophila actin-related proteins for testis-specific function. Mol Biol Evol. PubMed ID: 31697328 Levin, T. C. and Malik, H. S. (2017). Rapidly evolving Toll-3/4 genes encode male-specific Toll-like receptors in Drosophila. Mol Biol Evol. PubMed ID: 28541576 Kursel, L. E. and Malik, H. S. (2017). Recurrent gene duplication leads to diverse repertoires of centromeric histones in Drosophila species. Mol Biol Evol [Epub ahead of print]. PubMed ID: 28333217 Levine, M. T., Vander Wende, H. M., Hsieh, E., Baker, E. P. and Malik, H. S. (2016). Recurrent gene duplication diversifies genome defense repertoire in Drosophila. Mol Biol Evol [Epub ahead of print]. PubMed ID: 26979388 Phadnis, N., Baker, E. P., Cooper, J. C., Frizzell, K. A., Hsieh, E., de la Cruz, A. F., Shendure, J., Kitzman, J. O. and Malik, H. S. (2015). An essential cell cycle regulation gene causes hybrid inviability in Drosophila. Science 350: 1552-1555. PubMed ID: 26680200 Levine, M. T., Vander Wende, H. M. and Malik, H. S. (2015). Mitotic fidelity requires transgenerational action of a testis-restricted HP1. Elife 4. PubMed ID: 26151671 Gera, J., Budakoti, P., Suhag, M., Mandal, L. and Mandal, S. (2022). Physiological ROS controls Upd3-dependent modeling of ECM to support cardiac function in Drosophila. Sci Adv 8(7): eabj4991. PubMed ID: 35179958 Ghosh, S., Ghosh, S. and Mandal, L. (2020). Drosophila metamorphosis involves hemocyte mediated macroendocytosis and efferocytosis. Int J Dev Biol 64(4-5-6): 329-339. PubMed ID: 32658992 Tiwari, S. K., Toshniwal, A. G., Mandal, S. and Mandal, L. (2020). Fatty acid β-oxidation is required for the differentiation of larval hematopoietic progenitors in Drosophila. Elife 9. PubMed ID: 32530419 Kaur, H., Sharma, S. K., Mandal, S. and Mandal, L. (2019). Lar maintains the homeostasis of the hematopoietic organ in Drosophila by regulating insulin signaling in the niche. Development 146(24). PubMed ID: 31784462 Sharma, S. K., Ghosh, S., Geetha, A. R., Mandal, S. and Mandal, L. (2019). Cell adhesion-mediated actomyosin assembly regulates the activity of Cubitus interruptus for hematopoietic progenitor maintenance in Drosophila. Genetics. PubMed ID: 31138608 Toshniwal, A. G., Gupta, S., Mandal, L. and Mandal, S. (2019). ROS inhibits cell growth by regulating 4EBP and S6K, independent of TOR, during development. Dev Cell 49(3): 473-489. PubMed ID: 31063760 Aggarwal, P., Gera, J., Ghosh, S., Mandal, L. and Mandal, S. (2017). Non-canonical Decapentaplegic signaling activates Matrix Metalloproteinase 1 to restrict Hedgehog activity and limit ectopic eye differentiation in Drosophila. Genetics. PubMed ID: 28696218 Aggarwal, P., Gera, J., Mandal, L. and Mandal, S. (2016). The morphogen Decapentaplegic employs a two-tier mechanism to activate target retinal determining genes during ectopic eye formation in Drosophila. Sci Rep 6: 27270. PubMed ID: 27270790 Ghosh, S., Singh, A., Mandal, S. and Mandal, L. (2015). Active hematopoietic hubs in Drosophila adults generate hemocytes and contribute to immune response. Dev Cell 33: 478-488. PubMed ID: 25959225 Zajitschek, S., Zajitschek, F., Josway, S., Al Shabeeb, R., Weiner, H. and Manier, M. K. (2019). Costs and benefits of giant sperm and sperm storage organs in Drosophila melanogaster. J Evol Biol 32(11): 1300-1309. PubMed ID: 31465604 Lupold, S., Manier, M. K., Puniamoorthy, N., Schoff, C., Starmer, W. T., Luepold, S. H., Belote, J. M. and Pitnick, S. (2016). How sexual selection can drive the evolution of costly sperm ornamentation. Nature 533(7604): 535-538. PubMed ID: 27225128 Feng, S., Rastogi, C., Loker, R., Glassford, W. J., Tomas Rube, H., Bussemaker, H. J. and Mann, R. S. (2022). Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors. Nat Commun 13(1): 3808. PubMed ID: 35778382 Feng, S. and Mann, R. S. (2022). SpyChIP identifies cell type-specific transcription factor occupancy from complex tissues. Proc Natl Acad Sci U S A 119(25): e2122900119. PubMed ID: 35696584 Mishra, A. K., Fritsch, C., Voutev, R., Mann, R. S. and Sprecher, S. G. (2021). Homothorax controls a binary Rhodopsin switch in Drosophila ocelli. PLoS Genet 17(7): e1009460. PubMed ID: 34314427 Loker, R., Sanner, J. E. and Mann, R. S. (2021). Cell-type-specific Hox regulatory strategies orchestrate tissue identity. Curr Biol. PubMed ID: 34358443 Feng, S., Lu, S., Grueber, W. B. and Mann, R. S. (2021). Scarless engineering of the Drosophila genome near any site-specific integration site. Genetics 217(3). PubMed ID: 33772309 Diaz-de-la-Loza, M. D., Loker, R., Mann, R. S. and Thompson, B. J. (2020). Control of tissue morphogenesis by the HOX gene Ultrabithorax. Development 147(5). PubMed ID: 32122911 Howard, C. E., Chen, C. L., Tabachnik, T., Hormigo, R., Ramdya, P. and Mann, R. S. (2019). Serotonergic Modulation of Walking in Drosophila. Curr Biol 29(24): 4218-4230.e4218. PubMed ID: 31786064 Delker, R. K., Ranade, V., Loker, R., Voutev, R. and Mann, R. S. (2019). Low affinity binding sites in an activating CRM mediate negative autoregulation of the Drosophila Hox gene Ultrabithorax. PLoS Genet 15(10): e1008444. PubMed ID: 31589607 Sanchez-Higueras, C., Rastogi, C., Voutev, R., Bussemaker, H. J., Mann, R. S. and Hombria, J. C. (2019). In vivo Hox binding specificity revealed by systematic changes to a single cis regulatory module. Nat Commun 10(1): 3597. PubMed ID: 31399572 Venkatasubramanian, L., Guo, Z., Xu, S., Tan, L., Xiao, Q., Nagarkar-Jaiswal, S. and Mann, R. S. (2019). Stereotyped terminal axon branching of leg motor neurons mediated by IgSF proteins DIP-alpha and Dpr10. Elife 8. PubMed ID: 30714901 Newcomb, S., Voutev, R., Jory, A., Delker, R. K., Slattery, M. and Mann, R. S. (2018). cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg. PLoS Genet 14(8): e1007568. PubMed ID: 30142157 Enriquez, J., Rio, L. Q., Blazeski, R., Bellemin, S., Godement, P., Mason, C. and Mann, R. S. (2018). Differing strategies despite shared lineages of motor neurons and glia to achieve robust development of an adult neuropil in Drosophila. Neuron 97(3): 538-554.e535. PubMed ID: 29395908 Regadas, I., Dahlberg, O., Vaid, R., Ho, O., Belikov, S., Dixit, G., Deindl, S., Wen, J. and Mannervik, M. (2021). A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation. Mol Cell. PubMed ID: 33631105 Sajwan, S. and Mannervik, M. (2019). Gene activation by dCas9-CBP and the SAM system differ in target preference. Sci Rep 9(1): 18104. PubMed ID: 31792240 Boija, A., Mahat, D. B., Zare, A., Holmqvist, P. H., Philip, P., Meyers, D. J., Cole, P. A., Lis, J. T., Stenberg, P. and Mannervik, M. (2017). CBP regulates recruitment and release of promoter-proximal RNA polymerase II. Mol Cell 68(3): 491-503.e495. PubMed ID: 29056321 Yeung, K., Boija, A., Karlsson, E., Holmqvist, P. H., Tsatskis, Y., Nisoli, I., Yap, D. B., Lorzadeh, A., Moksa, M., Hirst, M., Aparicio, S., Fanto, M., Stenberg, P., Mannervik, M. and McNeill, H. (2017). Atrophin controls developmental signaling pathways via interactions with Trithorax-like. Elife 6. PubMed ID: 28327288 Boija, A. and Mannervik, M. (2016). Initiation of diverse epigenetic states during nuclear programming of the Drosophila body plan. Proc Natl Acad Sci U S A [Epub ahead of print]. PubMed ID: 27439862 Philip, P., Boija, A., Vaid, R., Churcher, A. M., Meyers, D. J., Cole, P. A., Mannervik, M. and Stenberg, P. (2015). CBP binding outside of promoters and enhancers in Drosophila melanogaster. Epigenetics Chromatin 8: 48. PubMed ID: 26604986 Crona, F., Holmqvist, P.H., Tang, M., Singla, B., Vakifahmetoglu-Norberg, H., Fantur, K. and Mannervik, M. (2015). The Brakeless co-regulator can directly activate and repress transcription in early Drosophila embryos. Dev Biol [Epub ahead of print]. PubMed ID: 26260775 Boija, A. and Mannervik, M. (2015). A time of change: Dynamics of chromatin and transcriptional regulation during nuclear programming in early Drosophila development. Mol Reprod Dev. PubMed ID: 26099731 Shir-Shapira, H., Sharabany, J., Filderman, M., Ideses, D., Ovadia-Shochat, A., Mannervik, M. and Juven-Gershon, T. (2015). Structure-Function Analysis of the Drosophila melanogaster Caudal Provides Insights into Core Promoter-Preferential Activation. J Biol Chem. PubMed ID: 26018075 Dahlberg, O., Shilkova, O., Tang, M., Holmqvist, P. H. and Mannervik, M. (2015). P-TEFb, the Super Elongation Complex and Mediator Regulate a Subset of Non-paused Genes during Early Drosophila Embryo Development. PLoS Genet 11: e1004971. PubMed ID: 25679530 Malzer, E., Dominicus, C. S., Chambers, J. E., Dickens, J. A., Mookerjee, S. and Marciniak, S. J. (2018). The integrated stress response regulates BMP signalling through effects on translation. BMC Biol 16(1): 34. PubMed ID: 29609607 Malzer, E., Szajewska-Skuta, M., Dalton, L. E., Thomas, S. E., Hu, N., Skaer, H., Lomas, D. A., Crowther, D. C., Marciniak, S. J. (2013) Coordinate regulation of eIF2alpha phosphorylation by dPPP1R15 and dGCN2 is required during development. J Cell Sci. PubMed ID: 23418347 Liu, B., Moloney, A., Meehan, S., Morris, K., Thomas, S. E., Serpell, L. C., Hider, R., Marciniak, S. J., Lomas, D. A. and Crowther, D. C. (2011). Iron promotes the toxicity of amyloid beta peptide by impeding its ordered aggregation. J Biol Chem 286: 4248-4256. PubMed ID: 21147772 Malzer, E., Daly, M. L., Moloney, A., Sendall, T. J., Thomas, S. E., Ryder, E., Ryoo, H. D., Crowther, D. C., Lomas, D. A. and Marciniak, S. J. (2010). Impaired tissue growth is mediated by checkpoint kinase 1 (CHK1) in the integrated stress response. J Cell Sci 123: 2892-2900. PubMed ID: 20682638 Jin, M., Eblimit, A., Pulikkathara, M., Corr, S., Chen, R. and Mardon, G. (2016). Conditional knockout of retinal determination genes in differentiating cells in Drosophila. FEBS J [Epub ahead of print]. PubMed ID: 27257739 Jin, M. and Mardon, G. (2016). Distinct biochemical activities of Eyes absent during Drosophila eye development. Sci Rep 6: 23228. PubMed ID: 26980695 Jusiak, B., Wang, F., Karandikar, U. C., Kwak, S. J., Wang, H., Chen, R. and Mardon, G. (2014). Genome-wide DNA binding pattern of the homeodomain transcription factor Sine oculis (So) in the developing eye of. Genom Data 2: 153-155. PubMed ID: 25126519 Karandikar, U. C., Jin, M., Jusiak, B., Kwak, S., Chen, R. and Mardon, G. (2014). Drosophila eyes absent is required for normal cone and pigment cell development. PLoS One 9: e102143. PubMed ID: 25057928 Jusiak, B., Karandikar, U. C., Kwak, S. J., Wang, F., Wang, H., Chen, R. and Mardon, G. (2014). Regulation of Drosophila Eye Development by the Transcription Factor Sine oculis. PLoS One 9: e89695. PubMed ID: 24586968 Atkins, M., Jiang, Y., Sansores-Garcia, L., Jusiak, B., Halder, G. and Mardon, G. (2013). Dynamic rewiring of the Drosophila retinal determination network switches its function from selector to differentiation. PLoS Genet 9: e1003731. PubMed ID: 24009524 Haase Gilbert, E., Kwak, S. J., Chen, R., Mardon, G. (2013) Drosophila signal peptidase complex member spase12 is required for development and cell differentiation. PLoS One 8: e60908. PubMed ID: 23573290 Jin, M., Jusiak, B., Bai, Z., Mardon, G. (2013) Eyes absent tyrosine phosphatase activity is not required for Drosophila development or survival. PLoS One 8: e58818. PubMed ID: 23554934 Jusiak, B., Abulimiti, A., Haelterman, N., Chen, R. and Mardon, G. (2012). MAPK target sites of eyes absent are not required for eye development or survival in Drosophila. PLoS One 7: e50776. PubMed ID: 23251383 Fiocca, K., Barrett, M., Waddell, E. A., Viveiros, J., McNair, C., O'Donnell, S. and Marenda, D. R. (2019). Mannitol ingestion causes concentration-dependent, sex-biased mortality in adults of the fruit fly (Drosophila melanogaster). PLoS One 14(5): e0213760. PubMed ID: 31150400 D'Rozario, M., Zhang, T., Waddell, E.A., Zhang, Y., Sahin, C., Sharoni, M., Hu, T., Nayal, M., Kutty, K., Liebl, F., Hu, W. and Marenda, D.R. (2016). Type I bHLH proteins Daughterless and Tcf4 restrict neurite branching and synapse formation by repressing Neurexin in postmitotic neurons. Cell Rep [Epub ahead of print]. PubMed ID: 27050508 Mhatre, S. D., Satyasi, V., Killen, M., Paddock, B. E., Moir, R. D., Saunders, A. J. and Marenda, D. R. (2014). Altered synapses in a Drosophila model of Alzheimer's disease. Dis Model Mech. PubMed ID: 24487408 Reza, M. A., Mhatre, S. D., Morrison, J. C., Utreja, S., Saunders, A. J., Breen, D. E. and Marenda, D. R. (2013). Automated analysis of courtship suppression learning and memory in Drosophila melanogaster. Fly (Austin) 7: 105-111. PubMed ID: 23644900 Distefano, G. M., Gangemi, A. J., Khandelwal, P. J., Saunders, A. J. and Marenda, D. R. (2012). Drosophila lilliputian is required for proneural gene expression in retinal development. Dev Dyn 241: 553-562. PubMed ID: 22275119 Verma, V. and Maresca, T. J. (2019). Direct observation of branching MT nucleation in living animal cells. J Cell Biol. PubMed ID: 31340987 Verma, V. and Maresca, T. J. (2019). Microtubule plus-ends act as physical signaling hubs to activate RhoA during cytokinesis. Elife 8. PubMed ID: 30758285 Ye, A. A., Verma, V. and Maresca, T. J. (2018). NOD is a plus end-directed motor that binds EB1 via a new microtubule tip localization sequence. J Cell Biol. PubMed ID: 29899040 Ye, A. A., Torabi, J. and Maresca, T. J. (2016). Aurora A Kinase Amplifies a Midzone Phosphorylation Gradient to Promote High-Fidelity Cytokinesis. Biol Bull 231: 61-72. PubMed ID: 27638695 Cane, S., Ye, A. A., Luks-Morgan, S. J., Maresca, T. J. (2013) Elevated polar ejection forces stabilize kinetochore-microtubule attachments. J Cell Biol 200: 203-218. PubMed ID: 23337118 Maresca, T. J. (2011). Chromosome segregation: a kinetochore missing link is found. Curr Biol 21: R261-263. PubMed ID: 21481764 Maresca, T. J. and Salmon, E. D. (2009). Intrakinetochore stretch is associated with changes in kinetochore phosphorylation and spindle assembly checkpoint activity. J Cell Biol 184: 373-381. PubMed ID: 19193623 Mateus, P. R., Nazario-Yepiz, N. O., Ibarra-Laclette, E., Ramirez Loustalot Laclette, M. and Markow, T. A. (2018). Developmental and transcriptomal responses to seasonal dietary shifts in the cactophilic Drosophila mojavensis of North America. J Hered. PubMed ID: 30371801 Martinson, V. G., Carpinteyro-Ponce, J., Moran, N. A. and Markow, T. A. (2017). A distinctive and host-restricted gut microbiota in populations of a cactophilic Drosophila species. Appl Environ Microbiol [Epub ahead of print]. PubMed ID: 28939605 Castro Vargas, C., Richmond, M. P., Ramirez Loustalot Laclette, M. and Markow, T. A. (2017). Early events in speciation: Cryptic species of Drosophila aldrichi. Ecol Evol 7(12): 4220-4228. PubMed ID: 28649335 Markow, T. A. (2015). Drosophila reproduction: Molecules meet morphology. Proc Natl Acad Sci U S A 112: 8168-8169. PubMed ID: 26124147 Markow, T. A. (2015). The secret lives of Drosophila flies. Elife 4. PubMed ID: 26041333 Haselkorn, T. S., Watts, T. D. and Markow, T. A. (2013). Density dynamics of diverse Spiroplasma strains naturally infecting different species of Drosophila. Fly (Austin) 7. PubMed ID: 23846301 Matzkin, L. M., Johnson, S., Paight, C., Markow, T. A. (2013) Preadult Parental Diet Affects Offspring Development and Metabolism in Drosophila melanogaster. PLoS One 8: e59530. PubMed ID: 23555695 Markow, T. A. (2013) Parents without Partners: Drosophila as a Model for Understanding the Mechanisms and Evolution of Parthenogenesis. G3 (Bethesda). PubMed ID: 23550124 Markow, T. A., Beall, S. and Castrezana, S. (2012). The wild side of life: Drosophila reproduction in nature. Fly (Austin) 6: 98-101. PubMed ID: 22627903 Yanagawa, A., Neyen, C., Lemaitre, B. and Marion-Poll, F. (2017). The gram-negative sensing receptor PGRP-LC contributes to grooming induction in Drosophila. PLoS One 12(11): e0185370. PubMed ID: 29121087 Yanagawa, A., Chabaud, M. A., Imai, T. and Marion-Poll, F. (2017). Olfactory cues play a significant role in removing fungus from the body surface of Drosophila melanogaster. J Invertebr Pathol. PubMed ID: 29175531 French, A. S., Sellier, M. J., Moutaz, A. A., Guigue, A., Chabaud, M. A., Reeb, P. D., Mitra, A., Grau, Y., Soustelle, L. and Marion-Poll, F. (2015). Dual mechanism for bitter avoidance in Drosophila. J Neurosci 35: 3990-4004. PubMed ID: 25740527 Yanagawa, A., Guigue, A. M. and Marion-Poll, F. (2014). Hygienic grooming is induced by contact chemicals in Drosophila melanogaster. Front Behav Neurosci 8: 254. PubMed ID: 25100963 Devambez, I., Ali Agha, M., Mitri, C., Bockaert, J., Parmentier, M. L., Marion-Poll, F., Grau, Y. and Soustelle, L. (2013). Galphao is required for L-canavanine detection in Drosophila. PLoS One 8: e63484. PubMed ID: 23671680 Marr, S. K., Lis, J. T., Treisman, J. E. and Marr, M. T. (2014). The Metazoan-Specific Mediator Subunit 26 (Med26) Is Essential For Viability And Is Found At Both Active Genes And Pericentric Heterochromatin In Drosophila. Mol Cell Biol. PubMed ID: 24820420 Olson, C. M., Donovan, M. R., Spellberg, M. J. and Marr, M. T. (2013). The insulin receptor cellular IRES confers resistance to eIF4A inhibition. Elife 2: e00542. PubMed ID: 23878722 Marr, S. K., Pennington, K. L. and Marr, M. T. (2012). Efficient metal-specific transcription activation by Drosophila MTF-1 requires conserved cysteine residues in the carboxy-terminal domain. Biochim Biophys Acta 1819: 902-912. PubMed ID: 22484022 Khodor, Y. L., Rodriguez, J., Abruzzi, K. C., Tang, C. H., Marr, M. T. and Rosbash, M. (2011). Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila. Genes Dev 25: 2502-2512. PubMed ID: 22156210 Barbaro, B. A., Lukacsovich, T., Agrawal, N., Burke, J., Bornemann, D. J., Purcell, J. M., Worthge, S. A., Caricasole, A., Weiss, A., Song, W., Morozova, O. A., Colby, D. W. and Marsh, J. L. (2014). Comparative study of naturally occurring huntingtin fragments in Drosophila points to exon 1 as the most pathogenic species in Huntington's disease. Hum Mol Genet. PubMed ID: 25305076 Song, W., Smith, M. R., Syed, A., Lukacsovich, T., Barbaro, B. A., Purcell, J., Bornemann, D. J., Burke, J., Marsh, J. L. (2013) Morphometric Analysis of Huntington's Disease Neurodegeneration in Drosophila. Methods Mol Biol 1017: 41-57. PubMed ID: 23719906 Bodai, L., Pallos, J., Thompson, L. M. and Marsh, J. L. (2012). Pcaf modulates polyglutamine pathology in a Drosophila model of Huntington's disease. Neurodegener Dis 9: 104-106. PubMed ID: 21912091 Sinadinos, C., Burbidge-King, T., Soh, D., Thompson, L. M., Marsh, J. L., Wyttenbach, A. and Mudher, A. K. (2009). Live axonal transport disruption by mutant huntingtin fragments in Drosophila motor neuron axons. Neurobiol Dis 34: 389-395. PubMed ID: 19268537 Denk-Lobnig, M., Totz, J. F., Heer, N. C., Dunkel, J. and Martin, A. C. (2021). Combinatorial patterns of graded RhoA activation and uniform F-actin depletion promote tissue curvature. Development. PubMed ID: 33983369 Imran Alsous, J., Romeo, N., Jackson, J. A., Mason, F. M., Dunkel, J. and Martin, A. C. (2021). Dynamics of hydraulic and contractile wave-mediated fluid transport during Drosophila oogenesis. Proc Natl Acad Sci U S A 118(10). PubMed ID: 33658367 Martin, A. C. (2020). The Physical Mechanisms of Drosophila Gastrulation: Mesoderm and Endoderm Invagination. Genetics 214(3): 543-560. PubMed ID: 32132154 Ko, C. S., Kalakuntla, P. and Martin, A. C. (2020). Apical constriction reversal upon mitotic entry underlies different morphogenetic outcomes of cell division. Mol Biol Cell: mbcE19120673. PubMed ID: 32129704 Yevick, H. G., Miller, P. W., Dunkel, J. and Martin, A. C. (2019). Structural redundancy in supracellular actomyosin networks enables robust tissue folding. Dev Cell. PubMed ID: 31353314 Ko, C. S., Tserunyan, V. and Martin, A. C. (2019). Microtubules promote intercellular contractile force transmission during tissue folding. J Cell Biol. PubMed ID: 31227595 Chanet, S., Miller, C. J., Vaishnav, E. D., Ermentrout, B., Davidson, L. A. and Martin, A. C. (2017). Actomyosin meshwork mechanosensing enables tissue shape to orient cell force. Nat Commun 8: 15014. PubMed ID: 28504247 Vasquez, C. G., Heissler, S. M., Billington, N., Sellers, J. R. and Martin, A. C. (2016). Drosophila non-muscle myosin II motor activity determines the rate of tissue folding. Elife 5. PubMed ID: 28035903 Xie, S., Mason, F. M. and Martin, A. C. (2016). Loss of Galpha12/13 exacerbates apical area dependence of actomyosin contractility. Mol Biol Cell 27: 3526-3536. PubMed ID: 27489340 Mason, F. M., Xie, S., Vasquez, C. G., Tworoger, M. and Martin, A. C. (2016). RhoA GTPase inhibition organizes contraction during epithelial morphogenesis. J Cell Biol 214: 603-617. PubMed ID: 27551058 Xie, S., Mason, F. M. and Martin, A. C. (2016). Loss of Galpha12/13 exacerbates apical area-dependence of actomyosin contractility. Mol Biol Cell [Epub ahead of print]. PubMed ID: 27489340 Mansilla, A., Martín, F.A., Martín, D. and Ferrús, A. (2015). Ligand-independent requirements of steroid receptors EcR and USP for cell survival. Cell Death Differ [Epub ahead of print]. PubMed ID: 26250909 Urena, E., Manjon, C., Franch-Marro, X. and Martin, D. (2014). Transcription factor E93 specifies adult metamorphosis in hemimetabolous and holometabolous insects. Proc Natl Acad Sci U S A. PubMed ID: 24778249 Takayama, S., Dhahbi, J., Roberts, A., Mao, G., Heo, S. J., Pachter, L., Martin, D. and Boffelli, D. (2014). Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity. Genome Res. PubMed ID: 24558263 Esslinger, S. M., Schwalb, B., Helfer, S., Michalik, K. M., Witte, H., Maier, K. C., Martin, D., Michalke, B., Tresch, A., Cramer, P. and Forstemann, K. (2013). Drosophila miR-277 controls branched-chain amino acid catabolism and affects lifespan. RNA Biol 10: 1042-1056. PubMed ID: 23669073 Pankotai, T., Popescu, C., Martin, D., Grau, B., Zsindely, N., Bodai, L., Tora, L., Ferrus, A. and Boros, I. (2010). Genes of the ecdysone biosynthesis pathway are regulated by the dATAC histone acetyltransferase complex in Drosophila. Mol Cell Biol 30: 4254-4266. PubMed ID: 20584983 Jarabo, P., de Pablo, C., Herranz, H., Martin, F. A. and Casas-Tinto, S. (2021). Insulin signaling mediates neurodegeneration in glioma. Life Sci Alliance 4(3). PubMed ID: 33526430 Barredo, C. G., Gil-Marti, B., Deveci, D., Romero, N. M. and Martin, F. A. (2020). Timing the Juvenile-Adult Neurohormonal Transition: Functions and Evolution. Front Endocrinol (Lausanne) 11: 602285. PubMed ID: 33643219 Jarabo, P. and Martin, F. A. (2017). Neurogenetics of Drosophila circadian clock: expect the unexpected. J Neurogenet 31(4): 250-265. PubMed ID: 28868955 Lark, A., Kitamoto, T. and Martin, J. R. (2017). Modulation of neuronal activity in the Drosophila mushroom body by DopEcR, a unique dual receptor for ecdysone and dopamine. Biochim Biophys Acta. PubMed ID: 28554773 Murmu, M. S. and Martin, J. R. (2016). Interaction between cAMP and intracellular Ca-signaling pathways during odor-perception and adaptation in Drosophila. Biochim Biophys Acta 1863: 2156-2174. PubMed ID: 27212269 Lark, A. R., Kitamoto, T. and Martin, J. R. (2016). In Vivo Functional Brain Imaging Approach Based on Bioluminescent Calcium Indicator GFP-aequorin. J Vis Exp. PubMed ID: 26779599 Pavot, P., Carbognin, E. and Martin, J. R. (2015). PKA and cAMP/CNG channels independently regulate the cholinergic Ca(2+)-response of Drosophila mushroom body neurons. eNeuro 2. PubMed ID: 26464971 Minocci, D., Carbognin, E., Murmu, M. S. and Martin, J. R. (2013). In vivo functional calcium imaging of induced or spontaneous activity in the fly brain using a GFP-apoaequorin-based bioluminescent approach. Biochim Biophys Acta 1833: 1632-1640. PubMed ID: 23287020 Murmu, M. S., Stinnakre, J., Real, E. and Martin, J. R. (2011). Calcium-stores mediate adaptation in axon terminals of olfactory receptor neurons in Drosophila. BMC Neurosci 12: 105. PubMed ID: 22024464 Inoshita, T., Martin, J. R., Marion-Poll, F. and Ferveur, J. F. (2011). Peripheral, central and behavioral responses to the cuticular pheromone bouquet in Drosophila melanogaster males. PLoS One 6: e19770. PubMed ID: 21625481 Weavers, H., Franz, A., Wood, W. and Martin, P. (2018). Long-term in vivo tracking of inflammatory cell dynamics within Drosophila pupae. J Vis Exp(136). PubMed ID: 29985351 Thuma, L., Carter, D., Weavers, H. and Martin, P. (2018). Drosophila immune cells extravasate from vessels to wounds using Tre1 GPCR and Rho signaling. J Cell Biol. PubMed ID: 29941473 Franz, A., Wood, W. and Martin, P. (2018). Fat body cells are motile and actively migrate to wounds to drive repair and prevent infection. Dev Cell 44(4): 460-470.e463. PubMed ID: 29486196 Weavers, H., Evans, I. R., Martin, P. and Wood, W. (2016). Corpse Engulfment Generates a Molecular Memory that Primes the Macrophage Inflammatory Response. Cell. PubMed ID: 27212238 Foronda, D., Curt, J. R., Prieto, N., Martin, P. and Sanchez-Herrero, E. (2015). The elimination of an adult segment by the Hox gene Abdominal-B. Mech Dev [Epub ahead of print]. PubMed ID: 26259679 Razzell, W., Wood, W. and Martin, P. (2014). Recapitulation of morphogenetic cell shape changes enables wound re-epithelialisation. Development. PubMed ID: 24718989 Foronda, D., Martin, P. and Sanchez-Herrero, E. (2012). Drosophila Hox and sex-determination genes control segment elimination through EGFR and extramacrochetae activity. PLoS Genet 8: e1002874. PubMed ID: Razzell, W., Wood, W. and Martin, P. (2011). Swatting flies: modelling wound healing and inflammation in Drosophila. Dis Model Mech 4: 569-574. PubMed ID: 21810906 Beatty, J. S., Molnar, C., Luque, C. M., de Celis, J. F. and Martin-Bermudo, M. D. (2021). EGFRAP encodes a new negative regulator of the EGFR acting in both normal and oncogenic EGFR/Ras-driven tissue morphogenesis. PLoS Genet 17(8): e1009738. PubMed ID: 34411095 Santa-Cruz Mateos, C., Valencia-Exposito, A., Palacios, I. M. and Martin-Bermudo, M. D. (2020). Integrins regulate epithelial cell shape by controlling the architecture and mechanical properties of basal actomyosin networks. PLoS Genet 16(6): e1008717. PubMed ID: 32479493 Dai, J., Estrada, B., Jacobs, S., Sanchez-Sanchez, B. J., Tang, J., Ma, M., Magadan-Corpas, P., Pastor-Pareja, J. C. and Martin-Bermudo, M. D. (2018). Dissection of Nidogen function in Drosophila reveals tissue-specific mechanisms of basement membrane assembly. PLoS Genet 14(9): e1007483. PubMed ID: 30260959 Sanchez-Sanchez, B. J., Urbano, J. M., Comber, K., Dragu, A., Wood, W., Stramer, B. and Martin-Bermudo, M. D. (2017). Drosophila embryonic hemocytes produce laminins to strengthen migratory response. Cell Rep 21(6): 1461-1470. PubMed ID: 29117553 Diaz de la Loza, M. C., Diaz-Torres, A., Zurita, F., Rosales-Nieves, A. E., Moeendarbary, E., Franze, K., Martin-Bermudo, M. D. and Gonzalez-Reyes, A. (2017). Laminin levels regulate tissue migration and anterior-posterior polarity during egg morphogenesis in Drosophila. Cell Rep 20(1): 211-223. PubMed ID: 28683315 Ng, B. F., Selvaraj, G. K., Mateos, C. S., Grosheva, I., Alvarez-Garcia, I., Martin-Bermudo, M. D. and Palacios, I. M. (2016). Alpha-Spectrin and Integrins act together to regulate actomyosin and columnarization, and to maintain a mono-layered follicular epithelium. Development. PubMed ID: 26952981 Valencia-Exposito, A., Grosheva, I., Miguez, D. G., Gonzalez-Reyes, A. and Martin-Bermudo, M. D. (2016). Myosin light-chain phosphatase regulates basal actomyosin oscillations during morphogenesis. Nat Commun 7: 10746. PubMed ID: 26888436 Pearson, J. R., Zurita, F., Tomas-Gallardo, L., Diaz-Torres, A., Diaz de la Loza Mdel, C., Franze, K., Martin-Bermudo, M. D. and Gonzalez-Reyes, A. (2016). ECM-Regulator timp Is Required for Stem Cell Niche Organization and Cyst Production in the Drosophila Ovary. PLoS Genet 12: e1005763. PubMed ID: 26808525 Gomez-Lamarca, M. J., Cobreros-Reguera, L., Ibanez-Jimenez, B., Palacios, I. M. and Martin-Bermudo, M. D. (2014). Integrins regulate epithelial cell differentiation by modulating Notch activity. J Cell Sci. PubMed ID: 25179603 Karkali, K., Tiwari, P., Singh, A., Tlili, S., Jorba, I., Navajas, D., Munoz, J. J., Saunders, T. E. and Martin-Blanco, E. (2022). Condensation of the Drosophila nerve cord is oscillatory and depends on coordinated mechanical interactions. Dev Cell 57(7): 867-882.e865. PubMed ID: 35413236 Prat-Rojo, C., Pouille, P. A., Buceta, J. and Martin-Blanco, E. (2019). Mechanical coordination is sufficient to promote tissue replacement during metamorphosis in Drosophila. Embo j: e103594. PubMed ID: 31858605 Mangione, F. and Martin-Blanco, E. (2018). The Dachsous/Fat/Four-Jointed pathway directs the uniform axial orientation of epithelial cells in the Drosophila abdomen. Cell Rep 25(10): 2836-2850.e2834. PubMed ID: 30517870 Alvarez-Fernandez, C., Tamirisa, S., Prada, F., Chernomoretz, A., Podhajcer, O., Blanco, E. and Martin-Blanco, E. (2015). Identification and functional analysis of healing regulators in Drosophila. PLoS Genet 11: e1004965. PubMed ID: 25647511 Rebollo, E., Karkali, K., Mangione, F. and Martin-Blanco, E. (2014). Live imaging in Drosophila: The optical and genetic toolkits. Methods. PubMed ID: 24814031 Pereira, A. M., Tudor, C., Kanger, J. S., Subramaniam, V. and Martin-Blanco, E. (2011). Integrin-dependent activation of the JNK signaling pathway by mechanical stress. PLoS One 6: e26182. PubMed ID: 22180774 Ninov, N., Menezes-Cabral, S., Prat-Rojo, C., Manjon, C., Weiss, A., Pyrowolakis, G., Affolter, M. and Martin-Blanco, E. (2010). Dpp signaling directs cell motility and invasiveness during epithelial morphogenesis. Curr Biol 20: 513-520. PubMed ID: 20226662 Ninov, N. and Martin-Blanco, E. (2009). Changing gears in the cell cycle: histoblasts and beyond. Fly (Austin) 3: 286-289. PubMed ID: 19934653 Ferguson, G. B. and Martinez-Agosto, J. A. (2014). Kicking it up a Notch for the best in show: Scalloped leads Yorkie into the haematopoietic arena. Fly (Austin) 8: 206-217. PubMed ID: 26151599 Wong, D. M., Shen, Z., Owyang, K. E. and Martinez-Agosto, J. A. (2014). Insulin- and Warts-dependent regulation of tracheal plasticity modulates systemic larval growth during hypoxia in Drosophila melanogaster. PLoS One 9: e115297. PubMed ID: 25541690 Ferguson, G. B. and Martinez-Agosto, J. A. (2014). Yorkie and Scalloped Signaling Regulates Notch-Dependent Lineage Specification during Drosophila Hematopoiesis. Curr Biol 24: 2665-2672. PubMed ID: 25454586 Dragojlovic-Munther, M. and Martinez-Agosto, J. A. (2013). Extracellular matrix-modulated Heartless signaling in Drosophila blood progenitors regulates their differentiation via a Ras/ETS/FOG pathway and target of rapamycin function. Dev Biol 384: 313-330. PubMed ID: 23603494 Dragojlovic-Munther, M. and Martinez-Agosto, J. A. (2012). Multifaceted roles of PTEN and TSC orchestrate growth and differentiation of Drosophila blood progenitors. Development 139: 3752-3763. PubMed ID: 22951642 Dragojlovic-Munther, M., Martinez-Agosto, J. A. (2013) Extracellular matrix-modulated Heartless signaling in Drosophila blood progenitors regulates their differentiation via a Ras/ETS/FOG pathway and Target of Rapamycin function. Dev Biol. PubMed ID: 23603494 de Navascues, J., Perdigoto, C. N., Bian, Y., Schneider, M. H., Bardin, A. J., Martinez-Arias, A. and Simons, B. D. (2012). Drosophila midgut homeostasis involves neutral competition between symmetrically dividing intestinal stem cells. EMBO J 31: 2473-2485. PubMed ID: 22522699 Mateus, A. M. and Martinez Arias, A. (2011). Patterned cell adhesion associated with tissue deformations during dorsal closure in Drosophila. PLoS One 6: e27159. PubMed ID: 22076130 Mateus, A. M., Gorfinkiel, N., Schamberg, S. and Martinez Arias, A. (2011). Endocytic and recycling endosomes modulate cell shape changes and tissue behaviour during morphogenesis in Drosophila. PLoS One 6: e18729. PubMed ID: 21533196 Ribeiro, A. L., Silva, R. D., Foyn, H., Tiago, M. N., Rathore, O. S., Arnesen, T. and Martinho, R. G. (2016). Naa50/San-dependent N-terminal acetylation of Scc1 is potentially important for sister chromatid cohesion. Sci Rep 6: 39118. PubMed ID: 27996020 Ferreira, T., Prudencio, P. and Martinho, R. G. (2014). Drosophila protein kinase N (Pkn) is a negative regulator of actin-myosin activity during oogenesis. Dev Biol 394(2): 277-291. PubMed ID: 25131196 Guilgur, L. G., Prudencio, P., Sobral, D., Liszekova, D., Rosa, A. and Martinho, R. G. (2014). Requirement for highly efficient pre-mRNA splicing during Drosophila early embryonic development. Elife 3: e02181. PubMed ID: 24755291 Alves, E., Henriques, B. J., Rodrigues, J. V., Prudencio, P., Rocha, H., Vilarinho, L., Martinho, R. G. and Gomes, C. M. (2012). Mutations at the flavin binding site of ETF:QO yield a MADD-like severe phenotype in Drosophila. Biochim Biophys Acta 1822(8): 1284-1292. PubMed ID: 22580358 Garrido-Maraver, J., Loh, S. H. Y. and Martins, L. M. (2019). Forcing contacts between mitochondria and the endoplasmic reticulum extends lifespan in a Drosophila model of Alzheimer's disease. Biol Open. PubMed ID: 31822473 Celardo, I., Lehmann, S., Costa, A.C., Loh, S.H. and Martins, L. M. (2017).dATF4 regulation of mitochondrial folate-mediated one-carbon metabolism is neuroprotective. Cell Death Differ [Epub ahead of print]. PubMed ID: 28211874 Lehmann, S., Loh, S. H. and Martins, L. M. (2016). Enhancing NAD+ salvage metabolism is neuroprotective in a PINK1 model of Parkinson's disease. Biol Open. PubMed ID: 28011627 Lehmann, S., Loh, S. H. and Martins, L. M. (2016). Enhancing NAD+ salvage metabolism is neuroprotective in a PINK1 model of Parkinson's disease. Biol Open [Epub ahead of print]. PubMed ID: 28011627 Celardo, I., Costa, A. C., Lehmann, S., Jones, C., Wood, N., Mencacci, N. E., Mallucci, G. R., Loh, S. H. and Martins, L. M. (2016). Mitofusin-mediated ER stress triggers neurodegeneration in pink1/parkin models of Parkinson's disease. Cell Death Dis 7: e2271. PubMed ID: 27336715 Lehmann, S., Costa, A. C., Celardo, I., Loh, S. H. and Martins, L. M. (2016). Parp mutations protect against mitochondrial dysfunction and neurodegeneration in a PARKIN model of Parkinson's disease. Cell Death Dis 7: e2166. PubMed ID: 27031963 Tufi, R., Gandhi, S., de Castro, I. P., Lehmann, S., Angelova, P. R., Dinsdale, D., Deas, E., Plun-Favreau, H., Nicotera, P., Abramov, A. Y., Willis, A. E., Mallucci, G. R., Loh, S. H. and Martins, L. M. (2014). Enhancing nucleotide metabolism protects against mitochondrial dysfunction and neurodegeneration in a PINK1 model of Parkinson's disease. Nat Cell Biol. PubMed ID: 24441527 de Castro, I. P., Costa, A. C., Celardo, I., Tufi, R., Dinsdale, D., Loh, S. H. and Martins, L. M. (2013). Drosophila ref(2)P is required for the parkin-mediated suppression of mitochondrial dysfunction in pink1 mutants. Cell Death Dis 4: e873. PubMed ID: 24157867 Costa, A. C., Loh, S. H., Martins, L. M. (2013) Drosophila Trap1 protects against mitochondrial dysfunction in a PINK1/parkin model of Parkinson's disease. Cell Death Dis 4: e467. PubMed ID: 23328674 Frazee, S. R. and Masly, J. P. (2015). Multiple sexual selection pressures drive the rapid evolution of complex morphology in a male secondary genital structure. Ecol Evol 5: 4437-4450. PubMed ID: 26664690 Smith, B. N., Ghazanfari, A. M., Bohm, R. A., Welch, W. P., Zhang, B. and Masly, J. P. (2015). A Flippase-Mediated GAL80/GAL4 Intersectional Resource for Dissecting Appendage Development in Drosophila. G3 (Bethesda) 5: 2105-2112. PubMed ID: 26276385 Masly, J. P. and Kamimura, Y. (2014). Asymmetric mismatch in strain-specific genital morphology causes increased harm to Drosophila females. Evolution 68: 2401-2411. PubMed ID: 24758304 Takacs, S., Biessmann, H., Reddy, H. M., Mason, J. M. and Torok, T. (2012). Protein interactions on telomeric retrotransposons in Drosophila. Int J Biol Sci 8: 1055-1061. PubMed ID: 22949888 Antao, J. M., Mason, J. M., Dejardin, J. and Kingston, R. E. (2012). Protein landscape at Drosophila melanogaster telomere-associated sequence repeats. Mol Cell Biol 32: 2170-2182. PubMed ID: 22493064 Dronamraju, R. and Mason, J. M. (2011). MU2 and HP1a regulate the recognition of double strand breaks in Drosophila melanogaster. PLoS One 6: e25439. PubMed ID: 21966530 Raimer, A. C., Singh, S. S., Edula, M. R., Paris-Davila, T., Vandadi, V., Spring, A. M. and Matera, A. G. (2020). Temperature-sensitive spinal muscular atrophy-causing point mutations lead to SMN instability, locomotor defects and premature lethality in Drosophila. Dis Model Mech 13(5). PubMed ID: 32501283 Schmidt, C. A., Giusto, J. D., Bao, A., Hopper, A. K. and Matera, A. G. (2019). Molecular determinants of metazoan tricRNA biogenesis. Nucleic Acids Res. PubMed ID: 31032518 Meers, M. P., Adelman, K., Duronio, R. J., Strahl, B. D., McKay, D. J. and Matera, A. G. (2018). Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster. BMC Genomics 19(1): 157. PubMed ID: 29466941 Gray, K. M., Kaifer, K. A., Baillat, D., Wen, Y., Bonacci, T. R., Ebert, A. D., Raimer, A. C., Spring, A. M., Have, S. T., Glascock, J. J., Gupta, K., Van Duyne, G. D., Emanuele, M. J., Lamond, A. I., Wagner, E. J., Lorson, C. L. and Matera, A. G. (2017). Self-oligomerization regulates stability of Survival Motor Neuron (SMN) protein isoforms by sequestering an SCF(Slmb) degron. Mol Biol Cell. PubMed ID: 29167380 Meers, M. P., Henriques, T., Lavender, C. A., McKay, D. J., Strahl, B. D., Duronio, R. J., Adelman, K. and Matera, A. G. (2017). Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife 6 [Epub ahead of print]. PubMed ID: 28346137 Garcia, E. L., Wen, Y., Praveen, K. and Matera, A. G. (2016). Transcriptomic comparison of Drosophila snRNP biogenesis mutants reveals mutant-specific changes in pre-mRNA processing: implications for spinal muscular atrophy. RNA [Epub ahead of print]. PubMed ID: 27268418 Lu, Z. and Matera, A. G. (2014). Developmental Analysis of Spliceosomal snRNA Isoform Expression. G3 (Bethesda) [Epub ahead of print]. PubMed ID: 25416704 Praveen, K., Wen, Y., Gray, K. M., Noto, J. J., Patlolla, A. R., Van Duyne, G. D. and Matera, A. G. (2014). SMA-Causing Missense Mutations in Survival motor neuron (Smn) Display a Wide Range of Phenotypes When Modeled in Drosophila. PLoS Genet 10: e1004489. PubMed ID: 25144193 Lu, Z., Guan, X., Schmidt, C. A. and Matera, A. G. (2014). RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins. Genome Biol 15: R7. PubMed ID: 24393626 Garcia, E. L., Lu, Z., Meers, M. P., Praveen, K. and Matera, A. G. (2013). Developmental arrest of Drosophila survival motor neuron (Smn) mutants accounts for differences in expression of minor intron-containing genes. RNA. PubMed ID: 24006466 Natalizio, A. H. and Matera, A. G. (2013). Identification and characterization of Drosophila Snurportin reveals a role for the import receptor Moleskin/Importin7 in snRNP biogenesis. Mol Biol Cell. PubMed ID: 23885126 Singh, A., Saha, T., Begemann, I., Ricker, A., Nusse, H., Thorn-Seshold, O., Klingauf, J., Galic, M. and Matis, M. (2018). Polarized microtubule dynamics directs cell mechanics and coordinates forces during epithelial morphogenesis. Nat Cell Biol 20(10): 1126-1133. PubMed ID: 30202051 Galic, M. and Matis, M. (2015). Polarized trafficking provides spatial cues for planar cell polarization within a tissue. Bioessays 37(6): 678-686. PubMed ID: 25845311 Olofsson, J., Sharp, K. A., Matis, M., Cho, B. and Axelrod, J. D. (2014). Prickle/spiny-legs isoforms control the polarity of the apical microtubule network in planar cell polarity. Development 141(14): 2866-2874. PubMed ID: 25005476 Simoes, P., Fragata, I., Santos, J., Santos, M. A., Santos, M., Rose, M. R. and Matos, M. (2019). How phenotypic convergence arises in experimental evolution. Evolution. PubMed ID: 31329268 Seabra, S. G., Fragata, I., Antunes, M. A., Faria, G. S., Santos, M. A., Sousa, V. C., Simoes, P. and Matos, M. (2017). Different genomic changes underlie adaptive evolution in populations of contrasting history. Mol Biol Evol. PubMed ID: 29029198 Simoes, P., Fragata, I., Seabra, S. G., Faria, G. S., Santos, M. A., Rose, M. R., Santos, M. and Matos, M. (2017). Predictable phenotypic, but not karyotypic, evolution of populations with contrasting initial history. Sci Rep 7(1): 913. PubMed ID: 28424494 Simoes, P., Fragata, I., Lopes-Cunha, M., Lima, M., Kellen, B., Barbaro, M., Santos, M. and Matos, M. (2015). Wing trait-inversion associations in Drosophila subobscura can be generalized within continents, but may change through time. J Evol Biol 28(12): 2163-2174. PubMed ID: 26302686 Fragata, I., Lopes-Cunha, M., Barbaro, M., Kellen, B., Lima, M., Santos, M. A., Faria, G. S., Santos, M., Matos, M. and Simoes, P. (2014). How much can history constrain adaptive evolution? A real-time evolutionary approach of inversion polymorphisms in Drosophila subobscura. J Evol Biol 27(12): 2727-2738. PubMed ID: 25430492 Simoes, P., Pascual, M., Coelho, M. M. and Matos, M. (2010). Divergent evolution of molecular markers during laboratory adaptation in Drosophila subobscura. Genetica 138(9-10): 999-1009. PubMed ID: 20803349 Ishibashi, T., Hatori, R., Maeda, R., Nakamura, M., Taguchi, T., Matsuyama, Y. and Matsuno, K. (2019). E and ID proteins regulate cell chirality and left-right asymmetric development in Drosophila. Genes Cells. PubMed ID: 30624823 Inatomi, M., Shin, D., Lai, Y. T. and Matsuno, K. (2019). Proper direction of male genitalia is prerequisite for copulation in Drosophila, implying cooperative evolution between genitalia rotation and mating behavior. Sci Rep 9(1): 210. PubMed ID: 30659250 Yamakawa, T., Atsumi, Y., Kubo, S., Yamagishi, A., Morita, I. and Matsuno, K. (2018). Insight into Notch signaling steps that involve pecanex from dominant-modifier screens in Drosophila. Genetics. Pubmed ID: 29853475 Matsumoto, K., Ayukawa, T., Ishio, A., Sasamura, T., Yamakawa, .T and Matsuno, K. (2016). Dual roles of O-glucose glycans redundant with monosaccharide O-fucose on Notch in Notch trafficking. J Biol Chem [Epub ahead of print]. PubMed ID: 27129198 Okumura, T., Sasamura, T., Inatomi, M., Hozumi, S., Nakamura, M., Hatori, R., Taniguchi, K., Nakazawa, N., Suzuki, E., Maeda, R., Yamakawa, T. and Matsuno, K. (2015). Class I myosins have overlapping and specialized gunctions in left-right asymmetric development in Drosophila. Genetics. PubMed ID: 25659376 Ishio, A., Sasamura, T., Ayukawa, T., Kuroda, J., Ishikawa, H. O., Aoyama, N., Matsumoto, K., Gushiken, T., Okajima, T., Yamakawa, T. and Matsuno, K. (2014). O-fucose monosaccharide of Drosophila Notch has a temperature-sensitive function and cooperates with O-glucose glycan in Notch transport and Notch signaling activation. J Biol Chem. PubMed ID: 25378397 Sawamura, K., Maehara, K., Keira, Y., Ishikawa, H. O., Sasamura, T., Yamakawa, T. and Matsuno, K. (2014). A Test of Double Interspecific Introgression of Nucleoporin Genes in Drosophila. G3 (Bethesda). PubMed ID: 25172915 Hatori, R., Ando, T., Sasamura, T., Nakazawa, N., Nakamura, M., Taniguchi, K., Hozumi, S., Kikuta, J., Ishii, M. and Matsuno, K. (2014). Left-right asymmetry is formed in individual cells by intrinsic cell chirality. Mech Dev. PubMed ID: 24800645 Nakayama, M., et al. (2014). A gain-of-function screen to identify genes that reduce lifespan in the adult of Drosophila melanogaster. BMC Genet 15: 46. PubMed ID: 24739137 Tomioka, S., Aigaki, T., Matsuo, T. (2012) Conserved cis-regulatory elements of two odorant-binding protein genes, Obp57d and Obp57e, in Drosophila. Genes Genet Syst 87: 323-329. PubMed ID: 23412634 Harada, E., Nakagawa, J., Asano, T., Taoka, M., Sorimachi, H., Ito, Y., Aigaki, T. and Matsuo, T. (2012). Functional evolution of duplicated odorant-binding protein genes, Obp57d and Obp57e, in Drosophila. PLoS One 7: e29710. PubMed ID: 22238638 Mitaka, H., Matsuo, T., Miura, N. and Ishikawa, Y. (2011). Identification of odorant-binding protein genes from antennal expressed sequence tags of the onion fly, Delia antiqua. Mol Biol Rep 38: 1787-1792. PubMed ID: 20848218 Saadaoui, M., Konno, D., Loulier, K., Goiame, R., Jadhav, V., Mapelli, M., Matsuzaki, F. and Morin, X. (2017). Loss of the canonical spindle orientation function in the Pins/LGN homolog AGS3. EMBO Rep. PubMed ID: 28684399 Yoshiura, S., Ohta, N. and Matsuzaki, F. (2012). Tre1 GPCR signaling orients stem cell divisions in the Drosophila central nervous system. Dev Cell 22: 79-91. PubMed ID: 22178499 Wang, C., Li, S., Januschke, J., Rossi, F., Izumi, Y., Garcia-Alvarez, G., Gwee, S. S., Soon, S. B., Sidhu, H. K., Yu, F., Matsuzaki, F., Gonzalez, C. and Wang, H. (2011). An ana2/ctp/mud complex regulates spindle orientation in Drosophila neuroblasts. Dev Cell 21: 520-533. PubMed ID: 21920316 Kitajima, A., Fuse, N., Isshiki, T. and Matsuzaki, F. (2010). Progenitor properties of symmetrically dividing Drosophila neuroblasts during embryonic and larval development. Dev Biol 347: 9-23. PubMed ID: 20599889 Greenspan, L. J. and Matunis, E. L. (2018). Retinoblastoma intrinsically regulates niche cell quiescence, identity, and niche number in the adult Drosophila testis. Cell Rep 24(13): 3466-3476.e3468. PubMed ID: 30257208 Ma, Q., de Cuevas, M. and Matunis, E.L. (2016). Chinmo is sufficient to induce male fate in somatic cells of the adult Drosophila ovary. Development [Epub ahead of print]. PubMed ID: 26811385 Greenspan, L. J., de Cuevas, M. and Matunis, E. (2015). Genetics of Gonadal Stem Cell Renewal. Annu Rev Cell Dev Biol. PubMed ID: 26355592 Hasan, S., Hétié, P. and Matunis, E.L. (2015). Niche signaling promotes stem cell survival in the Drosophila testis via the Jak-STAT target DIAP1. Dev Biol [Epub ahead of print]. PubMed ID: 25941003 Ma, Q., Wawersik, M. and Matunis, E. L. (2014). The Jak-STAT Target Chinmo Prevents Sex Transformation of Adult Stem Cells in the Drosophila Testis Niche. Dev Cell 31: 474-486. PubMed ID: 25453558 Stine, R. R., Greenspan, L. J., Ramachandran, K. V. and Matunis, E. L. (2014). Coordinate regulation of stem cell competition by Slit-Robo and JAK-STAT signaling in the Drosophila testis. PLoS Genet 10: e1004713. PubMed ID: 25375180 Li, Y., Ma, Q., Cherry, C. M. and Matunis, E. L. (2014). Steroid signaling promotes stem cell maintenance in the Drosophila testis. Dev Biol. PubMed ID: 25093968 Hetie, P., de Cuevas, M. and Matunis, E. (2014). Conversion of Quiescent Niche Cells to Somatic Stem Cells Causes Ectopic Niche Formation in the Drosophila Testis. Cell Rep. PubMed ID: 24746819 Stine, R. R., Matunis, E. L. (2013) Stem cell competition: finding balance in the niche. Trends Cell Biol. PubMed ID: 23597843 Narbonne-Reveau, K. and Maurange, C. (2019). Developmental regulation of regenerative potential in Drosophila by ecdysone through a bistable loop of ZBTB transcription factors. PLoS Biol 17(2): e3000149. PubMed ID: 30742616 Dillard, C., Narbonne-Reveau, K., Foppolo, S., Lanet, E. and Maurange, C. (2018). Two distinct mechanisms silence chinmo in Drosophila neuroblasts and neuroepithelial cells to limit their self-renewal. Development 145(2). PubMed ID: 29361557 Narbonne-Reveau, K., Lanet, E., Dillard, C., Foppolo, S., Chen, C. H., Parrinello, H., Rialle, S., Sokol, N. S. and Maurange, C. (2016). Neural stem cell-encoded temporal patterning delineates an early window of malignant susceptibility in Drosophila. Elife 5 [Epub ahead of print]. PubMed ID: 27296804 Lanet, E. and Maurange, C. (2014). Building a brain under nutritional restriction: insights on sparing and plasticity from studies. Front Physiol 5: 117. PubMed ID: 24723892 Lanet, E., Gould, A. P., Maurange, C. (2013) Protection of Neuronal Diversity at the Expense of Neuronal Numbers during Nutrient Restriction in the Drosophila Visual System. Cell Rep. PubMed ID: 23478023 Maurange, C. (2012). Temporal specification of neural stem cells: insights from Drosophila neuroblasts. Curr Top Dev Biol 98: 199-228. PubMed ID: 22305164 Comeault, A. A. and Matute, D. R. (2018). Genetic divergence and the number of hybridizing species affect the path to homoploid hybrid speciation. Proc Natl Acad Sci U S A 115(39): 9761-9766. PubMed ID: 30209213 Cooper, B. S., Sedghifar, A., Nash, W. T., Comeault, A. A. and Matute, D. R. (2018). A Maladaptive Combination of Traits Contributes to the Maintenance of a Drosophila Hybrid Zone. Curr Biol. PubMed ID: 30174184 Turissini, D. A., McGirr, J. A., Patel, S. S., David, J. R. and Matute, D. R. (2017). The rate of evolution of postmating-prezygotic reproductive isolation in Drosophila. Mol Biol Evol 35(2):312-334. PubMed ID: 29048573 Turissini, D. A. and Matute, D. R. (2017). Fine scale mapping of genomic introgressions within the Drosophila yakuba clade. PLoS Genet 13(9): e1006971. PubMed ID: 28873409 Turissini, D. A., Comeault, A. A., Liu, G., Lee, Y. C. and Matute, D. R. (2017). The ability of Drosophila hybrids to locate food declines with parental divergence. Evolution. PubMed ID: 28085186 Cooper, B. S., Ginsberg, P. S., Turelli, M. and Matute, D. R. (2017). Wolbachia in the Drosophila yakuba Complex: Pervasive Frequency Variation and Weak Cytoplasmic Incompatibility, but No Apparent Effect on Reproductive Isolation. Genetics 205(1): 333-351. PubMed ID: 27821433 Miller, C. J. and Matute, D. R. (2016). The Effect of Temperature on Drosophila Hybrid Fitness. G3 (Bethesda). PubMed ID: 27913636 Comeault, A. A., Venkat, A. and Matute, D. R. (2016). Correlated evolution of male and female reproductive traits drive a cascading effect of reinforcement in Drosophila yakuba. Proc Biol Sci 283(1835). PubMed ID: 27440664 Ramirez, J., Martinez, A., Lectez, B., Lee, S. Y., Franco, M., Barrio, R., Dittmar, G. and Mayor, U. (2015). Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells. PLoS One 10(10): e0139083. PubMed ID: 26460970 Talamillo, A., Herboso, L., Pirone, L., Perez, C., Gonzalez, M., Sanchez, J., Mayor, U., Lopitz-Otsoa, F., Rodriguez, M. S., Sutherland, J. D. and Barrio, R. (2013). Scavenger receptors mediate the role of SUMO and Ftz-f1 in Drosophila steroidogenesis. PLoS Genet 9(4): e1003473. PubMed ID: 23637637 Li, T., Hodgson, J. W., Petruk, S., Mazo, A. and Brock, H. W. (2017). Additional sex combs interacts with enhancer of zeste and trithorax and modulates levels of trimethylation on histone H3K4 and H3K27 during transcription of hsp70. Epigenetics Chromatin 10(1): 43. PubMed ID: 28927461 Black, K, L., Petruk, S., Fenstermaker, T. K., Hodgson, J. W., Caplan, J. L., Brock, H. W. and Mazo, A. (2016). Chromatin proteins and RNA are associated with DNA during all phases of mitosis. Cell Discov 2: 16038. PubMed ID: 27807477 Petruk, S., Black, K. L., Kovermann, S. K., Brock, H. W. and Mazo, A. (2013). Stepwise histone modifications are mediated by multiple enzymes that rapidly associate with nascent DNA during replication. Nat Commun 4: 2841. PubMed ID: 24276476 Carbonell, A., Mazo, A., Serras, F. and Corominas, M. (2013). Ash2 acts as an ecdysone receptor coactivator by stabilizing the histone methyltransferase Trr. Mol Biol Cell 24: 361-372. PubMed ID: 23197473 Petruk, S., Sedkov, Y., Johnston, D. M., Hodgson, J. W., Black, K. L., Kovermann, S. K., Beck, S., Canaani, E., Brock, H. W. and Mazo, A. (2012). TrxG and PcG proteins but not methylated histones remain associated with DNA through replication. Cell 150: 922-933. PubMed ID: 22921915 Johnston, D. M., Sedkov, Y., Petruk, S., Riley, K. M., Fujioka, M., Jaynes, J. B. and Mazo, A. (2011). Ecdysone- and NO-mediated gene regulation by competing EcR/Usp and E75A nuclear receptors during Drosophila development. Mol Cell 44: 51-61. PubMed ID: 21981918 Brock, H. W., Hodgson, J. W., Petruk, S. and Mazo, A. (2009). Regulatory noncoding RNAs at Hox loci. Biochem Cell Biol 87: 27-34. PubMed ID: 19234521 Gareau, C., Martel, D., Coudert, L., Mellaoui, S. and Mazroui, R. (2013). Characterization of Fragile X Mental Retardation Protein granules formation and dynamics in Drosophila. Biol Open 2: 68-81. PubMed ID: 23336078 Choi, B. J., Imlach, W. L., Jiao, W., Wolfram, V., Wu, Y., Grbic, M., Cela, C., Baines, R. A., Nitabach, M. N. and McCabe, B. D. (2014). Miniature neurotransmission regulates Drosophila synaptic structural maturation. Neuron 82: 618-634. PubMed ID: 24811381 Lotti, F., Imlach, W. L., Saieva, L., Beck, E. S., Hao le, T., Li, D. K., Jiao, W., Mentis, G. Z., Beattie, C. E., McCabe, B. D. and Pellizzoni, L. (2012). An SMN-dependent U12 splicing event essential for motor circuit function. Cell 151: 440-454. PubMed ID: 23063131 Imlach, W. L., Beck, E. S., Choi, B. J., Lotti, F., Pellizzoni, L. and McCabe, B. D. (2012). SMN is required for sensory-motor circuit function in Drosophila. Cell 151: 427-439. PubMed ID: 23063130 Beck, E. S., et al. (2012). Regulation of Fasciclin II and synaptic terminal development by the splicing factor Beag. J. Neurosci. 32(20): 7058-73. PubMed Citation: 22593074 Yalonetskaya, A., Mondragon, A. A., Hintze, Z. J., Holmes, S. and McCall, K. (2019). Nuclear degradation dynamics in a nonapoptotic programmed cell death. Cell Death Differ. PubMed ID: 31285547 Mondragon, A. A., Yalonetskaya, A., Ortega, A. J., Zhang, Y., Naranjo, O., Elguero, J., Chung, W. S. and McCall, K. (2019). Lysosomal machinery drives extracellular acidification to direct non-apoptotic cell death. Cell Rep 27(1): 11-19.e13. PubMed ID: 30943394 Santoso, C. S., Meehan, T. L., Peterson, J. S., Cedano, T. M., Turlo, C. V. and McCall, K. (2018). The ABC transporter Eato promotes cell clearance in the Drosophila melanogaster ovary. G3 (Bethesda). PubMed ID: 29295819 Meehan, T.L., Joudi, T.F., Timmons, A.K., Taylor, J.D., Habib, C.S., Peterson, J.S., Emmanuel, S., Franc, N.C. and McCall, K. (2016). Components of the engulfment machinery have distinct roles in corpse processing. PLoS One 11: e0158217. PubMed ID: 27347682 Etchegaray, J. I., Elguero, E. J., Tran, J. A., Sinatra, V., Feany, M. B. and McCall, K. (2016). Defective phagocytic corpse processing results in neurodegeneration and can be rescued by TORC1 activation. J Neurosci 36: 3170-3183. PubMed ID: 26985028 Timmons, A. K., Mondragon, A. A., Schenkel, C. E., Yalonetskaya, A., Taylor, J. D., Moynihan, K. E., Etchegaray, J. I., Meehan, T. L. and McCall, K. (2016). Phagocytosis genes nonautonomously promote developmental cell death in the Drosophila ovary. Proc Natl Acad Sci U S A. PubMed ID: 26884181 Meehan, T. L., Kleinsorge, S. E., Timmons, A. K., Taylor, J. D. and McCall, K. (2015). Polarization of the epithelial layer and apical localization of integrins are required for engulfment of apoptotic cells. Dis Model Mech. PubMed ID: 26398951 Peterson, J. S. and McCall, K. (2013). Combined Inhibition of Autophagy and Caspases Fails to Prevent Developmental Nurse Cell Death in the Ovary. PLoS One 8: e76046. PubMed ID: 24098761 Jenkins, V. K., Timmons, A. K. and McCall, K. (2013). Diversity of cell death pathways: insight from the fly ovary. Trends Cell Biol. PubMed ID: 23968895 Timmons, A. K., Meehan, T. L., Gartmond, T. D. and McCall, K. (2013). Use of necrotic markers in the Drosophila ovary. Methods Mol Biol 1004: 215-228. PubMed ID: 23733580 Keith, S. A., Bishop, C., Fallacaro, S. and McCartney, B. M. (2021). Arc1 and the microbiota together modulate growth and metabolic traits in Drosophila. Development. PubMed ID: 34240138 Molinar-Inglis, O., Oliver, S. L., Davison, P., Kunttas, E. and McCartney, B. M. (2018). APC2 associates with the actin cortex through a multi-part mechanism to regulate cortical actin organization and dynamics in the Drosophila ovary. Cytoskeleton (Hoboken). PubMed ID: 30019417 Kunttas-Tatli, E., Roberts, D. M. and McCartney, B. M. (2014). Self-association of the APC tumor suppressor is required for the assembly, stability, and activity of the Wnt signaling destruction complex. Mol Biol Cell. PubMed ID: 25208568 Komori, H., Xiao, Q., McCartney, B. M. and Lee, C. Y. (2013). Brain tumor specifies intermediate progenitor cell identity by attenuating beta-catenin/Armadillo activity. Development. PubMed ID: 24257623 Jaiswal, R., Stepanik, V., Rankova, A., Molinar, O., Goode, B. L., McCartney, B. (2013) Drosophila homologues of Adenomatous polyposis coli (APC) and the formin Diaphanous collaborate by a conserved mechanism to stimulate actin filament assembly. J Biol Chem. PubMed ID: 23558679 Kunttas-Tatli, E., Zhou, M. N., Zimmerman, S., Molinar, O., Zhouzheng, F., Carter, K., Kapur, M., Cheatle, A., Decal, R. and McCartney, B. M. (2012). Destruction complex function in the Wnt signaling pathway of Drosophila requires multiple interactions between Adenomatous polyposis coli 2 and Armadillo. Genetics 190: 1059-1075. PubMed ID: 22174073 Zhou, M. N., Kunttas-Tatli, E., Zimmerman, S., Zhouzheng, F. and McCartney, B. M. (2011). Cortical localization of APC2 plays a role in actin organization but not in Wnt signaling in Drosophila. J Cell Sci 124: 1589-1600. PubMed ID: 21486956 Belozerov, V. E., Lin, Z. Y., Gingras, A. C., McDermott, J. C. and Michael Siu, K. W. (2012). High-resolution protein interaction map of the Drosophila melanogaster p38 mitogen-activated protein kinases reveals limited functional redundancy. Mol Cell Biol 32: 3695-3706. PubMed ID: 22801366 Chen, Y., Kotian, N., Aranjuez, G., Chen, L., Messer, C. L., Burtscher, A., Sawant, K., Ramel, D., Wang, X. and McDonald, J. A. (2020). Protein phosphatase 1 activity controls a balance between collective and single cell modes of migration. Elife 9. PubMed ID: 32369438 Sawant, K., Chen, Y., Kotian, N., Preuss, K. M. and McDonald, J. A. (2018). Rap1 GTPase promotes coordinated collective cell migration in vivo. Mol Biol Cell: mbcE17120752. PubMed ID: 30156466 Klebanow, L. R., Peshel, E. C., Schuster, A. T., De, K., Sarvepalli, K., Lemieux, M. E., Lenoir, J. J., Moore, A. W., McDonald, J. A. and Longworth, M. S. (2016). Drosophila Condensin II subunit, Chromosome Associated Protein-D3, regulates cell fate determination through non-cell autonomous signaling. Development. PubMed ID: 27317808 Aranjuez, G., Burtscher, A., Sawant, K., Majumder, P. and McDonald, J. A. (2016). Dynamic myosin activation promotes collective morphology and migration by locally balancing oppositional forces from surrounding tissue. Mol Biol Cell. PubMed ID: 27122602 Geisbrecht, E. R., Sawant, K., Su, Y., Liu, Z. C., Silver, D. L., Burtscher, A., Wang, X., Zhu, A. J. and McDonald, J. A. (2013). Genetic interaction screens identify a role for hedgehog signaling in Drosophila border cell migration. Dev Dyn. PubMed ID: 23335293 Aranjuez, G., Kudlaty, E., Longworth, M. S. and McDonald, J. A. (2012). On the role of PDZ domain-encoding genes in Drosophila border cell migration. G3 (Bethesda) 2: 1379-1391. PubMed ID: 23173089 Majumder, P., Aranjuez, G., Amick, J. and McDonald, J. A. (2012). Par-1 controls myosin-II activity through myosin phosphatase to regulate border cell migration. Curr Biol 22: 363-372. PubMed ID: 22326025 Juarez, M. T., Patterson, R. A., Li, W. and McGinnis, W. (2013). Microinjection Wound Assay and In vivo Localization of Epidermal Wound Response Reporters in Drosophila Embryos. J Vis Exp. PubMed ID: 24300796 Patterson, R. A., Juarez, M. T., Hermann, A., Sasik, R., Hardiman, G., McGinnis, W. (2013) Serine proteolytic pathway activation reveals an expanded ensemble of wound response genes in Drosophila. PLoS One 8: e61773. PubMed ID: 23637905 Lemons, D., Pare, A. and McGinnis, W. (2012). Three Drosophila Hox complex microRNAs do not have major effects on expression of evolutionarily conserved Hox gene targets during embryogenesis. PLoS One 7: e31365. PubMed ID: 22393361 Juarez, M. T., Patterson, R. A., Sandoval-Guillen, E. and McGinnis, W. (2011). Duox, Flotillin-2, and Src42A are required to activate or delimit the spread of the transcriptional response to epidermal wounds in Drosophila. PLoS Genet 7: e1002424. PubMed ID: 22242003 McHale, P., Mizutani, C. M., Kosman, D., MacKay, D. L., Belu, M., Hermann, A., McGinnis, W., Bier, E. and Hwa, T. (2011). Gene length may contribute to graded transcriptional responses in the Drosophila embryo. Dev Biol 360: 230-240. PubMed ID: 21920356 McGuigan, K., Collet, J. M., McGraw, E. A., Ye, Y. H., Allen, S. L., Chenoweth, S. F. and Blows, M. W. (2014). The nature and extent of mutational pleiotropy in gene expression of male Drosophila serrata. Genetics 196(3): 911-921. PubMed ID: 21859495 Holzem, M., Franke, F. A., Mendes, C. C. and McGregor, A. P. (2020). Wnt gene regulation and function during maxillary palp development in Drosophila melanogaster. Dev Biol. PubMed ID: 32229133 Gaspar, P., Arif, S., Sumner-Rooney, L., Kittelmann, M., Bodey, A. J., Stern, D. L., Nunes, M. D. S. and McGregor, A. P. (2020). Characterization of the Genetic Architecture Underlying Eye Size Variation Within Drosophila melanogaster and Drosophila simulans. G3 (Bethesda). PubMed ID: 31919111 Kittelmann, S., Buffry, A. D., Franke, F. A., Almudi, I., Yoth, M., Sabaris, G., Couso, J. P., Nunes, M. D. S., Frankel, N., Gomez-Skarmeta, J. L., Pueyo-Marques, J., Arif, S. and McGregor, A. P. (2018). Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution. PLoS Genet 14(5): e1007375. PubMed ID: 29723190 Kittelmann, S., Buffry, A. D., Franke, F. A., Almudi, I., Yoth, M., Sabaris, G., Couso, J. P., Nunes, M. D. S., Frankel, N., Gomez-Skarmeta, J. L., Pueyo-Marques, J., Arif, S. and McGregor, A. P. (2018). Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution. PLoS Genet 14(5): e1007375. PubMed ID: 29723190 Tanaka, K. M., Hopfen, C., Herbert, M. R., Schlotterer, C., Stern, D. L., Masly, J. P., McGregor, A. P. and Nunes, M. D. (2015). Genetic architecture and functional characterization of genes underlying the rapid diversification of male external genitalia between Drosophila simulans and Drosophila mauritiana. Genetics [Epub ahead of print]. PubMed ID: 25783699 Arif, S., Kittelmann, S. and McGregor, A. P. (2015). From shavenbaby to the naked valley: trichome formation as a model for evolutionary developmental biology. Evol Dev 17: 120-126. PubMed ID: 25627718 Hilbrant, M., Almudi, I., Leite, D. J., Kuncheria, L., Posnien, N., Nunes, M. and McGregor, A. P. (2014). Sexual dimorphism and natural variation within and among species in the Drosophila retinal mosaic. BMC Evol Biol 14: 240. PubMed ID: 25424626 Arif, S., Murat, S., Almudi, I., Nunes, M. D., Bortolamiol-Becet, D., McGregor, N. S., Currie, J. M., Hughes, H., Ronshaugen, M., Sucena, E., Lai, E. C., Schlotterer, C., McGregor, A. P. (2013) Evolution of mir-92a Underlies Natural Morphological Variation in Drosophila melanogaster. Curr Biol. PubMed ID: 23453955 Hilbrant, M., Damen, W. G. and McGregor, A. P. (2012). Evolutionary crossroads in developmental biology: the spider Parasteatoda tepidariorum. Development 139: 2655-2662. PubMed ID: 22782720 Posnien, N., Hopfen, C., Hilbrant, M., Ramos-Womack, M., Murat, S., Schonauer, A., Herbert, S. L., Nunes, M. D., Arif, S., Breuker, C. J., Schlotterer, C., Mitteroecker, P. and McGregor, A. P. (2012). Evolution of eye morphology and rhodopsin expression in the Drosophila melanogaster species subgroup. PLoS One 7: e37346. PubMed ID: 22662147 > Uyehara, C. M. and McKay, D. J. (2019). Direct and widespread role for the nuclear receptor EcR in mediating the response to ecdysone in Drosophila. Proc Natl Acad Sci U S A. PubMed ID: 31019084 Meers, M. P., Adelman, K., Duronio, R. J., Strahl, B. D., McKay, D. J. and Matera, A. G. (2018). Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster. BMC Genomics 19(1): 157. PubMed ID: 29466941 Uyehara, C. M., Nystrom, S. L., Niederhuber, M. J., Leatham-Jensen, M., Ma, Y., Buttitta, L. A. and McKay, D. J. (2017). Hormone-dependent control of developmental timing through regulation of chromatin accessibility. Genes Dev [Epub ahead of print]. PubMed ID: 28536147 Pearson, J. C., McKay, D. J., Lieb, J. D. and Crews, S. T. (2016). Chromatin profiling of Drosophila CNS subpopulations identifies active transcriptional enhancers. Development 143(20): 3723-3732. PubMed ID: 27802137 Guo, Y., Flegel, K., Kumar, J., McKay, D. J. and Buttitta, L. A. (2016). Ecdysone signaling induces two phases of cell cycle exit in Drosophila cells. Biol Open 5(11): 1648-1661. PubMed ID: 27737823 Hoffmann, A. A., Blacket, M. J., McKechnie, S. W., Rako, L., Schiffer, M., Rane, R. V., Good, R. T., Robin, C. and Lee, S. F. (2012). A proline repeat polymorphism of the Frost gene of Drosophila melanogaster showing clinal variation but not associated with cold resistance. Insect Mol Biol 21: 437-445. PubMed ID: 22708613 Johnson, T. K., Cockerell, F. E. and McKechnie, S. W. (2011). Transcripts from the Drosophila heat-shock gene hsr-omega influence rates of protein synthesis but hardly affect resistance to heat knockdown. Mol Genet Genomics 285: 313-323. PubMed ID: 21399957 Yan, R. and McKee, B. D. (2013). The cohesion protein SOLO associates with SMC1 and is required for synapsis, recombination, homolog bias and cohesion and pairing of centromeres in Drosophila Meiosis. PLoS Genet 9: e1003637. PubMed ID: 23874232 McKee, B. D., Yan, R. and Tsai, J. H. (2012). Meiosis in male Drosophila. Spermatogenesis 2: 167-184. PubMed ID: 23087836 Jang, J. K., Gladstein, A. C., Das, A., Shapiro, J. G., Sisco, Z. L. and McKim, K. S. (2021). Multiple pools of PP2A regulate spindle assembly, kinetochore attachments, and cohesion in Drosophila oocytes. J Cell Sci. PubMed ID: 34160620 Wang, L. I., Das, A. and McKim, K. S. (2019). Sister centromere fusion during meiosis I depends on maintaining cohesins and destabilizing microtubule attachments. PLoS Genet 15(5): e1008072. PubMed ID: 31150390 Das, A., Cesario, J., Hinman, A. M., Jang, J. K. and McKim, K. S. (2018). Kinesin 6 regulation in Drosophila female meiosis by the non-conserved N- and C-terminal domains. G3 (Bethesda). PubMed ID: 29514846 Radford, S. J., Go, A. M. and McKim, K. S. (2016). Cooperation between kinesin motors promotes spindle symmetry and chromosome organization in Oocytes. Genetics [Epub ahead of print]. PubMed ID: 27932541 Gyuricza, M. R., Manheimer, K. B., Apte, V., Krishnan, B., Joyce, E. F., McKee, B. D. and McKim, K. S. (2016). Dynamic and stable cohesins regulate synaptonemal complex assembly and chromosome segregation. Curr Biol [Epub ahead of print]. PubMed ID: 27291057 Das, A., Shah, S. J., Fan, B., Paik, D., DiSanto, D. J., Hinman, A. M., Cesario, J. M., Battaglia, R. A., Demos, N. and McKim, K. S. (2015). Spindle assembly and chromosome segregation requires central spindle proteins in Drosophila oocytes. Genetics. PubMed ID: 26564158 Radford, S. J., Hoang, T. L., Gluszek, A. A., Ohkura, H. and McKim, K. S. (2015). Lateral and end-on kinetochore attachments are coordinated to achieve bi-orientation in Drosophila oocytes. PLoS Genet 11: e1005605. PubMed ID: 26473960 Radford, S. J., Harrison, A. M. and McKim, K. S. (2012). Microtubule-depolymerizing kinesin KLP10A restricts the length of the acentrosomal meiotic spindle in Drosophila females. Genetics 192: 431-440. PubMed ID: 22865737 Radford, S. J., Harrison, A. M. and McKim, K. S. (2012). Microtubule-depolymerizing kinesin KLP10A restricts the length of the acentrosomal meiotic spindle in Drosophila females. Genetics 192: 431-440. PubMed ID: 22865737 Birnbaum, A., Sodders, M., Bouska, M., Chang, K., Kang, P., McNeill, E. and Bai, H. (2020). FOXO Regulates Neuromuscular Junction Homeostasis During Drosophila Aging. Front Aging Neurosci 12: 567861. PubMed ID: 33584240 Yeung, K., Boija, A., Karlsson, E., Holmqvist, P. H., Tsatskis, Y., Nisoli, I., Yap, D. B., Lorzadeh, A., Moksa, M., Hirst, M., Aparicio, S., Fanto, M., Stenberg, P., Mannervik, M. and McNeill, H. (2017). Atrophin controls developmental signaling pathways via interactions with Trithorax-like. Elife 6. PubMed ID: 28327288 Kwan, J., Sczaniecka, A., Arash, E. H., Nguyen, L., Chen, C. C., Ratkovic, S., Klezovitch, O., Attisano, L., McNeill, H., Emili, A. and Vasioukhin, V. (2016). DLG5 connects cell polarity and Hippo signaling protein networks by linking PAR-1 with MST1/2. Genes Dev 30(24): 2696-2709. PubMed ID: 28087714 Delanoue, R., Meschi, E., Agrawal, N., Mauri, A., Tsatskis, Y., McNeill, H. and Láopold, P. (2016). Drosophila insulin release is triggered by adipose Stunted ligand to brain Methuselah receptor. Science 353: 1553-1556. PubMed ID: 27708106 Chang, Y. J., Zhou, L., Binari, R., Manoukian, A., Mak, T., McNeill, H. and Stambolic, V. (2016). The Rho guanine nucleotide exchange factor DRhoGEF2 is a genetic modifier of the PI3K pathway in Drosophila. PLoS One 11: e0152259. PubMed ID: 27015411 Payankaulam, S., Yeung, K., McNeill, H., Henry, R.W. and Arnosti, D.N. (2016). Regulation of cell polarity determinants by the Retinoblastoma tumor suppressor protein. Sci Rep 6: 22879. PubMed ID: 26971715 Avet-Rochex, A., Carvajal, N., Christoforou, C. P., Yeung, K., Maierbrugger, K. T., Hobbs, C., Lalli, G., Cagin, U., Plachot, C., McNeill, H. and Bateman, J. M. (2014). Unkempt Is Negatively Regulated by mTOR and Uncouples Neuronal Differentiation from Growth Control. PLoS Genet 10: e1004624. PubMed ID: 25210733 Sing, A., Tsatskis, Y., Fabian, L., Hester, I., Rosenfeld, R., Serricchio, M., Yau, N., Bietenhader, M., Shanbhag, R., Jurisicova, A., Brill, J. A., McQuibban, G. A. and McNeill, H. (2014). The atypical cadherin fat directly regulates mitochondrial function and metabolic state. Cell 158: 1293-1308. PubMed ID: 25215488 Enderle, L. and McNeill, H. (2013). Hippo gains weight: added insights and complexity to pathway control. Sci Signal 6: re7. PubMed ID: 24106343 Xu, S., Stern, M. and McNew, J. A. (2016). Beneficial effects of rapamycin in a Drosophila model for hereditary spastic paraplegia. J Cell Sci [Epub ahead of print]. PubMed ID: 27909242 Summerville, J., Faust, J., Fan, E., Pendin, D., Daga, A., Formella, J., Stern, M. and McNew, J. A. (2016). The effects of ER morphology on synaptic structure and function in Drosophila melanogaster. J Cell Sci. PubMed ID: 26906425 Faust, J. E., Manisundaram, A., Ivanova, P. T., Milne, S. B., Summerville, J. B., Brown, H. A., Wangler, M., Stern, M. and McNew, J. A. (2014). Peroxisomes Are Required for Lipid Metabolism and Muscle Function in Drosophila melanogaster. PLoS One 9: e100213. PubMed ID: 24945818 Faust, J. E., Verma, A., Peng, C. and McNew, J. A. (2012). An inventory of peroxisomal proteins and pathways in Drosophila melanogaster. Traffic 13: 1378-1392. PubMed ID: 22758915 Kocak, E., Dykstra, S., Nemeth, A., Coughlin, C. G., Rodgers, K. and McVey, M. (2019). The Drosophila melanogaster PIF1 helicase promotes survival during replication stress and processive DNA synthesis during double-strand gap repair. Genetics. PubMed ID: 31537623 Cassidy, D., Epiney, D., Salameh, C., Zhou, L. T., Salomon, R. N., Schirmer, A. E., McVey, M. and Bolterstein, E. (2019). Evidence for premature aging in a Drosophila model of Werner syndrome. Exp Gerontol: 110733. PubMed ID: 31518666 Khodaverdian, V. Y., Hanscom, T., Yu, A. M., Yu, T. L., Mak, V., Brown, A. J., Roberts, S. A. and McVey, M. (2017). Secondary structure forming sequences drive SD-MMEJ repair of DNA double-strand breaks. Nucleic Acids Res. PubMed ID: 29121353 Alexander, J. L., Beagan, K., Orr-Weaver, T. L. and McVey, M. (2016). Multiple mechanisms contribute to double-strand break repair at rereplication forks in Drosophila follicle cells. Proc Natl Acad Sci U S A. [Epub ahead of print] PubMed ID: 27849606 Bolterstein, E., Rivero, R., Marquez, M. and McVey, M. (2014). The Drosophila Werner Exonuclease Participates in an Exonuclease-Independent Response to Replication Stress. Genetics. PubMed ID: 24709634 Thomas, A. M., Hui, C., South, A. and McVey, M. (2013). Common variants of Drosophila melanogaster Cyp6d2 cause camptothecin sensitivity and synergize with loss of Brca2. G3 (Bethesda) 3: 91-99. PubMed ID: 23316441 Kane, D. P., Shusterman, M., Rong, Y. and McVey, M. (2012). Competition between replicative and translesion polymerases during homologous recombination repair in Drosophila. PLoS Genet 8: e1002659. PubMed ID: 22532806 Farkas, R., Datkova, Z., Mentelova, L., Low, P., Benova-Liszekova, D., Beno, M., Sass, M., Rehulka, P., Rehulkova, H., Raska, O., Kovacik, L., Smigova, J., Raska, I. and Mechler, B. M. (2014). Apocrine secretion in Drosophila salivary glands: subcellular origin, dynamics, and identification of secretory proteins. PLoS One 9: e94383. PubMed ID: 24732043 Benbahouche Nel, H., Iliopoulos, I., Torok, I., Marhold, J., Henri, J., Kajava, A. V., Farkas, R., Kempf, T., Schnolzer, M., Meyer, P., Kiss, I., Bertrand, E., Mechler, B. M. and Pradet-Balade, B. (2014). Drosophila Spag is the homolog of RNA polymerase II-associated protein 3 (RPAP3) and recruits the heat shock proteins 70 and 90 (Hsp70 and Hsp90) during the assembly of cellular machineries. J Biol Chem 289: 6236-6247. PubMed ID: 24394412 Zornetta, I., Scorzeto, M., Mendes Dos Reis, P. V., De Lima, M. E., Montecucco, C., Megighian, A. and Rossetto, O. (2017). Electrophysiological Characterization of the Antarease Metalloprotease from Tityus serrulatus Venom. Toxins (Basel) 9(3). PubMed ID: 28264432 Romano, G., Appocher, C., Scorzeto, M., Klima, R., Baralle, F. E., Megighian, A. and Feiguin, F. (2015). Glial TDP-43 regulates axon wrapping, GluRIIA clustering and fly motility by autonomous and non-autonomous mechanisms. Hum Mol Genet 24(21): 6134-6145. PubMed ID: 26276811 Zheng, Y., Buchwalter, R. A., Zheng, C., Wight, E. M., Chen, J. V. and Megraw, T. L. (2020). A perinuclear microtubule-organizing centre controls nuclear positioning and basement membrane secretion. Nat Cell Biol 22(3): 297-309. PubMed ID: 32066907 Tillery, M. M. L., Blake-Hedges, C., Zheng, Y., Buchwalter, R. A. and Megraw, T. L. (2018). Centrosomal and Non-Centrosomal Microtubule-Organizing Centers (MTOCs) in Drosophila melanogaster. Cells 7(9). PubMed ID: 30154378 Chen, J. V., Buchwalter, R. A., Kao, L. R. and Megraw, T. L. (2017). A Splice Variant of Centrosomin Converts Mitochondria to Microtubule-Organizing Centers. Curr Biol 27(13): 1928-1940 e1926. PubMed ID: 28669756 Zheng, Y., Mennella, V., Marks, S., Wildonger, J., Elnagdi, E., Agard, D. and Megraw, T. L. (2016). The Seckel syndrome and centrosomal protein Ninein localizes asymmetrically to stem cell centrosomes, but is not required for normal development, behavior, or DNA damage response in Drosophila. Mol Biol Cell. PubMed ID: 27053665 Chen, J. V., Kao, L. R., Jana, S. C., Sivan-Loukianova, E., Mendonca, S., Cabrera, O. A., Singh, P., Cabernard, C., Eberl, D. F., Bettencourt-Dias, M. and Megraw, T. L. (2015). Rootletin organizes the ciliary rootlet to achieve neuron sensory function in Drosophila. J Cell Biol 211: 435-453. PubMed ID: 26483560 Chen, J. V. and Megraw, T. L. (2014). Spermitin: a novel mitochondrial protein in Drosophila spermatids. PLoS One 9: e108802. PubMed ID: 25265054 Riparbelli, M. G., Cabrera, O. A., Callaini, G. and Megraw, T. L. (2013). Unique properties of Drosophila spermatocyte primary cilia. Biol Open 2: 1137-1147. PubMed ID: 24244850 Riparbelli, M. G., Callaini, G. and Megraw, T. L. (2012). Assembly and persistence of primary cilia in dividing Drosophila spermatocytes. Dev Cell 23: 425-432. PubMed ID: 22898783 Kao, L. R. and Megraw, T. L. (2009). Centrocortin cooperates with centrosomin to organize Drosophila embryonic cleavage furrows. Curr Biol 19: 937-942. PubMed ID: 19427213 Kuhn, L., Majzoub, K., Einhorn, E., Chicher, J., Pompon, J., Imler, J. L., Hammann, P. and Meignin, C. (2017). Definition of a RACK1 Interaction Network in Drosophila melanogaster Using SWATH-MS. G3 (Bethesda). PubMed ID: 28522639 Lamiable, O., Meignin, C. and Imler, J. L. (2016). WntD and Diedel: Two immunomodulatory cytokines in Drosophila immunity. Fly (Austin) 10(4): 187-194. PubMed ID: 27314646 Lamiable, O., Arnold, J., de Faria, I. J., Olmo, R. P., Bergami, F., Meignin, C., Hoffmann, J. A., Marques, J. T. and Imler, J. L. (2016). Analysis of the Contribution of Hemocytes and Autophagy to Drosophila Antiviral Immunity. J Virol 90(11): 5415-5426. PubMed ID: 27009948 Stawarski, M., Hernandez, R. X., Feghhi, T., Borycz, J. A., Lu, Z., Agarwal, A., Reihl, K., Tavora, R., Lau, A. W. C., Meinertzhagen, I. A., Renden, R. and Macleod, G. T. (2020). Neuronal glutamatergic synaptic clefts alkalinize rather than acidify during neurotransmission. J Neurosci. PubMed ID: 31964719 Shinomiya, K., Horne, J. A., McLin, S., Wiederman, M., Nern, A., Plaza, S. M. and Meinertzhagen, I. A. (2019). The organization of the second optic chiasm of the Drosophila optic lobe. Front Neural Circuits 13: 65. PubMed ID: 31680879 Xu, C., Theisen, E., Maloney, R., Peng, J., Santiago, I., Yapp, C., Werkhoven, Z., Rumbaut, E., Shum, B., Tarnogorska, D., Borycz, J., Tan, L., Courgeon, M., Meinertzhagen, I. A., de Bivort, B., Drugowitsch, J. and Pecot, M. Y. (2019). Control of synaptic specificity by establishing a relative preference for synaptic partners. Neuron. PubMed ID: 31300277 Tsai, J. W., Kostyleva, R., Chen, P. L., Rivas-Serna, I. M., Clandinin, M. T., Meinertzhagen, I. A. and Clandinin, T. R. (2019). Transcriptional feedback links lipid synthesis to synaptic vesicle pools in Drosophila photoreceptors. Neuron. PubMed ID: 30737130 Shinomiya, K., Huang, G., Lu, Z., Parag, T., Xu, C. S., Aniceto, R., Ansari, N., Cheatham, N., Lauchie, S., Neace, E., Ogundeyi, O., Ordish, C., Peel, D., Shinomiya, A., Smith, C., Takemura, S., Talebi, I., Rivlin, P. K., Nern, A., Scheffer, L. K., Plaza, S. M. and Meinertzhagen, I. A. (2019). Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. Elife 8. PubMed ID: 30624205 Horne, J. A., Langille, C., McLin, S., Wiederman, M., Lu, Z., Xu, C. S., Plaza, S. M., Scheffer, L. K., Hess, H. F. and Meinertzhagen, I. A. (2018). A resource for the Drosophila antennal lobe provided by the connectome of glomerulus VA1v. Elife 7. PubMed ID: 30382940 Borycz, J., Ziegler, A., Borycz, J. A., Uhlenbrock, G., Tapken, D., Caceres, L., Hollmann, M., Hovemann, B. T. and Meinertzhagen, I. A. (2018). Location and functions of Inebriated in the Drosophila eye. Biol Open 7(7). PubMed ID: 30037884 Astigarraga, S., Douthit, J., Tarnogorska, D., Creamer, M. S., Mano, O., Clark, D. A., Meinertzhagen, I. A. and Treisman, J. E. (2018). Drosophila Sidekick is required in developing photoreceptors to enable visual motion detection. Development. PubMed ID: 29361567 Takemura, S. Y., Nern, A., Chklovskii, D. B., Scheffer, L. K., Rubin, G. M. and Meinertzhagen, I. A. (2017). The comprehensive connectome of a neural substrate for 'ON' motion detection in Drosophila. Elife 6 [Epub ahead of print]. PubMed ID: 28432786 Lu, Z., Chouhan, A. K., Borycz, J. A., Lu, Z., Rossano, A. J., Brain, K. L., Zhou, Y., Meinertzhagen, I. A. and Macleod, G. T. (2016). High-probability neurotransmitter release sites represent an energy-efficient design. Curr Biol 26: 2562-2571. PubMed ID: 27593375 Lin, T. Y., Luo, J., Shinomiya, K., Ting, C. Y., Lu, Z., Meinertzhagen, I. A. and Lee, C. H. (2016). Mapping chromatic pathways in the Drosophila visual system. J Comp Neurol 524: Spc1. PubMed ID: 26648045 Orme, M. H., et al. (2016). The unconventional myosin CRINKLED and its mammalian orthologue MYO7A regulate caspases in their signalling roles. Nat Commun 7: 10972. PubMed ID: 26960254 Marbach, D., Roy, S., Ay, F., Meyer, P. E., Candeias, R., Kahveci, T., Bristow, C. A. and Kellis, M. (2012). Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks. Genome Res 22: 1334-1349. PubMed ID: 22456606 Saez, L., Derasmo, M., Meyer, P., Stieglitz, J. and Young, M. W. (2011). A key temporal delay in the circadian cycle of Drosophila is mediated by a nuclear localization signal in the timeless protein. Genetics 188: 591-600. PubMed ID: 21515571 Meiklejohn, C. D., Holmbeck, M. A., Siddiq, M. A., Abt, D. N., Rand, D. M. and Montooth, K. L. (2013). An Incompatibility between a mitochondrial tRNA and its nuclear-encoded tRNA synthetase compromises development and fitness in Drosophila. PLoS Genet 9: e1003238. PubMed ID: 23382693 Meiklejohn, C. D. and Presgraves, D. C. (2012). Little evidence for demasculinization of the Drosophila X chromosome among genes expressed in the male germline. Genome Biol Evol 4: 1007-1016. PubMed ID: 22975718 Meiklejohn, C. D., Landeen, E. L., Cook, J. M., Kingan, S. B. and Presgraves, D. C. (2011). Sex chromosome-specific regulation in the Drosophila male germline but little evidence for chromosomal dosage compensation or meiotic inactivation. PLoS Biol 9: e1001126. PubMed ID: 21857805 Joshi, S. S. and Meller, V. H. (2017). Satellite repeats identify X chromatin for dosage compensation in Drosophila melanogaster males. Curr Biol 27(10): 1393-1402.e1392. PubMed ID: 28457869 Koya, S. K. and Meller, V. H. (2015). Modulation of heterochromatin by male specific lethal proteins and roX RNA in Drosophila melanogaster males. PLoS One 10: e0140259. PubMed ID: 26468879 Menon, D. U. and Meller, V. H. (2015). Identification of the Drosophila X chromosome: The long and short of it. RNA Biol: 1-6. PubMed ID: 26367502 Apte, M.S. and Meller, V.H. (2015). Sex differences in Drosophila melanogaster heterochromatin are regulated by non-sex specific factors. PLoS One 10: e0128114. PubMed ID: 26053165 Menon, D. U., Coarfa, C., Xiao, W., Gunaratne, P. H. and Meller, V. H. (2014). siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster. Proc Natl Acad Sci U S A. PubMed ID: 25368194 Joshi, S. S., Cheong, H. and Meller, V. H. (2014). A strategy for generation and balancing of autosome: Y chromosome translocations. Fly (Austin) 8: 58-62. PubMed ID: 24646827 Apte, M. S., Moran, V. A., Menon, D. U., Rattner, B. P., Barry, K. H., Zunder, R. M., Kelley, R. and Meller, V. H. (2013). Generation of a Useful roX1 Allele by Targeted Gene Conversion. G3 (Bethesda). PubMed ID: 24281425 Menon, D. U. and Meller, V. H. (2012). A role for siRNA in X-chromosome dosage compensation in Drosophila melanogaster. Genetics 191: 1023-1028. PubMed ID: 22554892 Koya, S. K. and Meller, V. H. (2011). roX RNAs and Genome Regulation in Drosophila Melanogaster. Prog Mol Subcell Biol 51: 147-160. PubMed ID: 21287137 Chang, C. H., Chavan, A., Palladino, J., Wei, X., Martins, N. M. C., Santinello, B., Chen, C. C., Erceg, J., Beliveau, B. J., Wu, C. T., Larracuente, A. M. and Mellone, B. G. (2019). Islands of retroelements are major components of Drosophila centromeres. PLoS Biol 17(5): e3000241. PubMed ID: 31086362 Rosin, L. and Mellone, B.G. (2016). Co-evolving CENP-A and CAL1 domains mediate centromeric CENP-A deposition across Drosophila species. Dev Cell 37: 136-147. PubMed ID: 27093083 Chen, C. C., Dechassa, M. L., Bettini, E., Ledoux, M. B., Belisario, C., Heun, P., Luger, K. and Mellone, B. G. (2014). CAL1 is the Drosophila CENP-A assembly factor. J Cell Biol. PubMed ID: 24469636 Ross, B. D., Rosin, L., Thomae, A. W., Hiatt, M. A., Vermaak, D., de la Cruz, A. F., Imhof, A., Mellone, B. G. and Malik, H. S. (2013). Stepwise evolution of essential centromere function in a Drosophila neogene. Science 340: 1211-1214. PubMed ID: 23744945 Chen, C. C., Greene, E., Bowers, S. R. and Mellone, B. G. (2012). A role for the CAL1-partner Modulo in centromere integrity and accurate chromosome segregation in Drosophila. PLoS One 7: e45094. PubMed ID: 23028777 Duffraisse, M., Paul, R., Carnesecchi, J., Hudry, B., Banreti, A., Reboulet, J., Ajuria, L., Lohmann, I. and Merabet, S. (2020). Role of a versatile peptide motif controlling Hox nuclear export and autophagy in the Drosophila fat body. J Cell Sci 133(18). PubMed ID: 32878938 Bischof, J., Duffraisse, M., Furger, E., Ajuria, L., Giraud, G., Vanderperre, S., Paul, R., Bjorklund, M., Ahr, D., Ahmed, A. W., Spinelli, L., Brun, C., Basler, K. and Merabet, S. (2018). Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila. Elife 7. PubMed ID: 30247122 Baeza, M., Viala, S., Heim, M., Dard, A., Hudry, B., Duffraisse, M., Rogulja-Ortmann, A., Brun, C. and Merabet, S. (2015). Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo. Elife 4. PubMed ID: 25869471 Boube, M., Hudry, B., Immarigeon, C., Carrier, Y., Bernat-Fabre, S., Merabet, S., Graba, Y., Bourbon, H. M. and Cribbs, D. L. (2014). Drosophila melanogaster Hox transcription factors access the RNA polymerase II machinery through direct homeodomain binding to a conserved motif of mediator subunit Med19. PLoS Genet 10: e1004303. PubMed ID: 24786462 Sambrani, N., Hudry, B., Maurel-Zaffran, C., Zouaz, A., Mishra, R., Merabet, S. and Graba, Y. (2013). Distinct molecular strategies for Hox-mediated limb suppression in Drosophila: from cooperativity to dispensability/antagonism in TALE partnership. PLoS Genet 9: e1003307. PubMed ID: 23505377 Bing, X., Rzezniczak, T. Z., Bateman, J. R. and Merritt, T. J. (2014). Transvection-Based Gene Regulation in Drosophila Is a Complex and Plastic Trait. G3 (Bethesda). PubMed ID: 25213691 Rzezniczak, T. Z., Lum, T. E., Harniman, R. and Merritt, T. J. (2012). A combination of structural and cis-regulatory factors drives biochemical differences in Drosophila melanogaster malic enzyme. Biochem Genet 50: 823-837. PubMed ID: 22733181 Rzezniczak, T. Z., Douglas, L. A., Watterson, J. H. and Merritt, T. J. (2011). Paraquat administration in Drosophila for use in metabolic studies of oxidative stress. Anal Biochem 419: 345-347. PubMed ID: 21910964 Bernard, K. E., Parkes, T. L. and Merritt, T. J. (2011). A model of oxidative stress management: moderation of carbohydrate metabolizing enzymes in SOD1-null Drosophila melanogaster. PLoS One 6: e24518. PubMed ID: 21909438 Lum, T. E. and Merritt, T. J. (2011). Nonclassical regulation of transcription: interchromosomal interactions at the malic enzyme locus of Drosophila melanogaster. Genetics 189: 837-849. PubMed ID: 21900270 Teseo, S., Veerus, L. and Mery, F. (2016). Fighting experience affects fruit fly behavior in a mating context. Naturwissenschaften 103: 38. PubMed ID: 27108453 Philippe, A.S., Jeanson, R., Pasquaretta, C., Rebaudo, F., Sueur, C. and Mery, F. (2016). Genetic variation in aggregation behaviour and interacting phenotypes in Drosophila. Proc Biol Sci 283 (1827). PubMed ID: 27009219 Pasquaretta, C., Battesti, M., Klenschi, E., Bousquet, C.A., Sueur, C. and Mery, F. (2016). How social network structure affects decision-making in Drosophila melanogaster. Proc Biol Sci 283(1826). PubMed ID: 26936247 Teseo, S., Veerus, L., Moreno, C. and Mery, F. (2016). Sexual harassment induces a temporary fitness cost but does not constrain the acquisition of environmental information in fruit flies. Biol Lett 12. PubMed ID: 26763219 Foucaud, J., Philippe, A. S., Moreno, C. and Mery, F. (2013). A genetic polymorphism affecting reliance on personal versus public information in a spatial learning task in Drosophila melanogaster. Proc Biol Sci 280: 20130588. PubMed ID: 23576793 Burns, J. G., Svetec, N., Rowe, L., Mery, F., Dolan, M. J., Boyce, W. T. and Sokolowski, M. B. (2012). Gene-environment interplay in Drosophila melanogaster: chronic food deprivation in early life affects adult exploratory and fitness traits. Proc Natl Acad Sci U S A 109 Suppl 2: 17239-17244. PubMed ID: 23045644 Nikolova, L. S. and Metzstein, M. M. (2015). Intracellular lumen formation in Drosophila proceeds via a novel subcellular compartment. Development [Epub ahead of print]. PubMed ID: 26428009 Jones, T. A., Nikolova, L. S., Schjelderup, A. and Metzstein, M. M. (2014). Exocyst-mediated membrane trafficking is required for branch outgrowth in Drosophila tracheal terminal cells. Dev Biol. PubMed ID: 24607370 Chapin, A., Hu, H., Rynearson, S. G., Hollien, J., Yandell, M. and Metzstein, M. M. (2014). In Vivo Determination of Direct Targets of the Nonsense Mediated Decay Pathway in Drosophila. G3 (Bethesda). PubMed ID: 24429422 Jones, T. A. and Metzstein, M. M. (2013). Examination of Drosophila larval tracheal terminal cells by light microscopy. J Vis Exp. PubMed ID: 23892488 Ruiz, O. E., Nikolova, L. S. and Metzstein, M. M. (2012). Drosophila Zpr1 (Zinc finger protein 1) is required downstream of both EGFR and FGFR signaling in tracheal subcellular lumen formation. PLoS One 7: e45649. PubMed ID: 23029159 Frizzell, K. A., Rynearson, S. G. and Metzstein, M. M. (2012). Drosophila mutants show NMD pathway activity is reduced, but not eliminated, in the absence of Smg6. RNA 18: 1475-1486. PubMed ID: 22740637 Jones, T. A. and Metzstein, M. M. (2011). A novel function for the PAR complex in subcellular morphogenesis of tracheal terminal cells in Drosophila melanogaster. Genetics 189: 153-164. PubMed ID: 21750259 Beehler-Evans, R. and Micchelli, C. A. (2015). Generation of enteroendocrine cell diversity in midgut stem cell lineages. Development 142: 654-664. PubMed ID: 25670792 Micchelli, C. A. (2014). Whole-mount immunostaining of the adult Drosophila gastrointestinal tract. Methods. PubMed ID: 24680702 Strand, M. and Micchelli, C. A. (2013). Regional Control of Drosophila Gut Stem Cell Proliferation: EGF Establishes GSSC Proliferative Set Point & Controls Emergence from Quiescence. PLoS One 8: e80608. PubMed ID: 24236188 Lee, W. C. and Micchelli, C. A. (2013). Development and characterization of a chemically defined food for Drosophila. PLoS One 8: e67308. PubMed ID: 23844001 Micchelli, C. A. (2012). The origin of intestinal stem cells in Drosophila. Dev Dyn 241: 85-91. PubMed ID: 21972080 Strand, M. and Micchelli, C. A. (2011). Quiescent gastric stem cells maintain the adult Drosophila stomach. Proc Natl Acad Sci U S A 108: 17696-17701. PubMed ID: 21984734 Micchelli, C. A., Sudmeier, L., Perrimon, N., Tang, S. and Beehler-Evans, R. (2011). Identification of adult midgut precursors in Drosophila. Gene Expr Patterns 11: 12-21. PubMed ID: 20804858 Kang, L., Aggarwal, D. D., Rashkovetsky, E., Korol, A. B. and Michalak, P. (2016). Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system. BMC Genomics 17: 233. PubMed ID: 26979755 Kim, Y. B., Oh, J. H., McIver, L. J., Rashkovetsky, E., Michalak, K., Garner, H. R., Kang, L., Nevo, E., Korol, A. B. and Michalak, P. (2014). Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel. Proc Natl Acad Sci U S A. PubMed ID: 25006263 Hubner, S., Rashkovetsky, E., Kim, Y. B., Oh, J. H., Michalak, K., Weiner, D., Korol, A. B., Nevo, E. and Michalak, P. (2013). Genome differentiation of Drosophila melanogaster from a microclimate contrast in Evolution Canyon, Israel. Proc Natl Acad Sci U S A 110: 21059-21064. PubMed ID: 24324170 Ma, D. and Michalak, P. (2011). Ephemeral association between gene CG5762 and hybrid male sterility in Drosophila sibling species. J Mol Evol 73: 181-187. PubMed ID: 22052252 Harrell, E. R., Pimentel, D. and Miesenbock, G. (2021). Changes in presynaptic gene expression during homeostatic compensation at a central synapse. J Neurosci. PubMed ID: 33608385 Groschner, L. N., Chan Wah Hak, L., Bogacz, R., DasGupta, S. and Miesenbock, G. (2018). Dendritic Integration of Sensory Evidence in Perceptual Decision-Making. Cell 173(4): 894-905.e813. PubMed ID: 29706545 Donlea, J. M., Pimentel, D., Talbot, C. B., Kempf, A., Omoto, J. J., Hartenstein, V. and Miesenbock, G. (2018). Recurrent circuitry for balancing sleep need and sleep. Neuron 97(2): 378-389.e374. PubMed ID: 29307711 Pimentel, D., Donlea, J.M., Talbot, C.B., Song, S.M., Thurston, A.J. and Miesenböck, G. (2016). Operation of a homeostatic sleep switch. Nature [Epub ahead of print]. PubMed ID: 27487216 DasGupta, S., Ferreira, C. H. and Miesenbock, G. (2014). FoxP influences the speed and accuracy of a perceptual decision in Drosophila. Science 344: 901-904. PubMed ID: 24855268 DasGupta, S., Ferreira, C. H. and Miesenbock, G. (2014). FoxP influences the speed and accuracy of a perceptual decision in Drosophila. Science 344: 901-904. PubMed ID: 24855268 Donlea, J. M., Pimentel, D. and Miesenbock, G. (2014). Neuronal machinery of sleep homeostasis in Drosophila. Neuron 81: 860-872. PubMed ID: 24559676 Lin, A. C., Bygrave, A. M., de Calignon, A., Lee, T. and Miesenbock, G. (2014). Sparse, decorrelated odor coding in the mushroom body enhances learned odor discrimination. Nat Neurosci. PubMed ID: 24561998 Parnas, M., Lin, A. C., Huetteroth, W. and Miesenbock, G. (2013). Odor discrimination in Drosophila: from neural population codes to behavior. Neuron 79: 932-944. PubMed ID: 24012006 Messal, H. A., Almagro, J., Zaw Thin, M., Tedeschi, A., Ciccarelli, A., Blackie, L., Anderson, K. I., Miguel-Aliaga, I., van Rheenen, J. and Behrens, A. (2021). Antigen retrieval and clearing for whole-organ immunofluorescence by FLASH. Nat Protoc 16(1): 239-262. PubMed ID: 33247285 Hadjieconomou, D., King, G., Gaspar, P., Mineo, A., Blackie, L., Ameku, T., Studd, C., de Mendoza, A., Diao, F., White, B. H., Brown, A. E. X., Placais, P. Y., Preat, T. and Miguel-Aliaga, I. (2020). Enteric neurons increase maternal food intake during reproduction. Nature 587(7834): 455-459. PubMed ID: 33116314 Hudry, B., de Goeij, E., Mineo, A., Gaspar, P., Hadjieconomou, D., Studd, C., Mokochinski, J. B., Kramer, H. B., Placais, P. Y., Preat, T. and Miguel-Aliaga, I. (2019). Sex Differences in intestinal carbohydrate metabolism promote food intake and sperm maturation. Cell 178(4): 901-918. PubMed ID: 31398343 Perea, D., Guiu, J., Hudry, B., Konstantinidou, C., Milona, A., Hadjieconomou, D., Carroll, T., Hoyer, N., Natarajan, D., Kallijarvi, J., Walker, J. A., Soba, P., Thapar, N., Burns, A. J., Jensen, K. B. and Miguel-Aliaga, I. (2017). Ret receptor tyrosine kinase sustains proliferation and tissue maturation in intestinal epithelia. Embo J. PubMed ID: 28899900 Hudry, B., Khadayate, S. and Miguel-Aliaga, I. (2016). The sexual identity of adult intestinal stem cells controls organ size and plasticity. Nature 530: 344-348. PubMed ID: 26887495 Reiff, T., Jacobson, J., Cognigni, P., Antonello, Z., Ballesta, E., Tan, K. J., Yew, J. Y., Dominguez, M. and Miguel-Aliaga, I. (2015). Endocrine remodelling of the adult intestine sustains reproduction in Drosophila. Elife 4 [Epub ahead of print]. PubMed ID: 26216039 Linneweber, G. A., Jacobson, J., Busch, K. E., Hudry, B., Christov, C. P., Dormann, D., Yuan, M., Otani, T., Knust, E., de Bono, M. and Miguel-Aliaga, I. (2014). Neuronal Control of Metabolism through Nutrient-Dependent Modulation of Tracheal Branching. Cell 156: 69-83. PubMed ID: 24439370 Lemaitre, B. and Miguel-Aliaga, I. (2013). The Digestive Tract of Drosophila melanogaster. Annu Rev Genet. PubMed ID: 24016187 Sarraf-Zadeh, L., Christen, S., Sauer, U., Cognigni, P., Miguel-Aliaga, I., Stocker, H., Kohler, K. and Hafen, E. (2013). Local requirement of the Drosophila insulin binding protein imp-L2 in coordinating developmental progression with nutritional conditions. Dev Biol 381: 97-106. PubMed ID: 23773803 Kiss, V., Jipa, A., Varga, K., Takats, S., Maruzs, T., Lorincz, P., Simon-Vecsei, Z., Szikora, S., Foldi, I., Bajusz, C., Toth, D., Vilmos, P., Gaspar, I., Ronchi, P., Mihaly, J. and Juhasz, G. (2019). Drosophila Atg9 regulates the actin cytoskeleton via interactions with profilin and Ena. Cell Death Differ. PubMed ID: 31740789 Szikora, S., Gajdos, T., Novak, T., Farkas, D., Foldi, I., Lenart, P., Erdelyi, M. and Mihaly, J. (2020). Nanoscopy reveals the layered organization of the sarcomeric H-zone and I-band complexes. J Cell Biol 219(1). PubMed ID: 31816054 Migh, E., Gotz, T., Foldi, I., Szikora, S., Gombos, R., Darula, Z., Medzihradszky, K. F., Maleth, J., Hegyi, P., Sigrist, S. and Mihaly, J. (2018). Microtubule organization in presynaptic boutons relies on the formin DAAM. Development 145(6). PubMed ID: 29487108 Vig, A. T., Foldi, I., Szikora, S., Migh, E., Gombos, R., Toth, M. A., Huber, T., Pinter, R., Talian, G. C., Mihaly, J. and Bugyi, B. (2017). The activities of the c-terminal regions of the formin protein Disheveled-associated activator of morphogenesis (daam) in actin dynamics. J Biol Chem [Epub ahead of print]. PubMed ID: 28642367 Szikora, S., Foldi, I., Toth, K., Migh, E., Vig, A., Bugyi, B., Maleth, J., Hegyi, P., Kaltenecker, P., Sanchez-Soriano, N. and Mihaly, J. (2017). The formin DAAM is required for coordination of the actin and microtubule cytoskeleton in axonal growth cones. J Cell Sci. PubMed ID: 28606990 Dollar, G., Gombos, R., Barnett, A. A., Sanchez Hernandez, D., Maung, S. M., Mihaly, J. and Jenny, A. (2016). Unique and overlapping functions of formins Frl and DAAM during ommatidial rotation and neuronal development in Drosophila. Genetics. PubMed ID: 26801180 Gombos, R., Migh, E., Antal, O., Mukherjee, A., Jenny, A. and Mihaly, J. (2015). The Formin DAAM Functions as Molecular Effector of the Planar Cell Polarity Pathway during Axonal Development in Drosophila. J Neurosci 35: 10154-10167. PubMed ID: 26180192 Vogler, G., Liu, J., Iafe, T. W., Migh, E., Mihaly, J. and Bodmer, R. (2014). Cdc42 and formin activity control non-muscle myosin dynamics during Drosophila heart morphogenesis. J Cell Biol 206: 909-922. PubMed ID: 25267295 Molnar, I., Migh, E., Szikora, S., Kalmar, T., Vegh, A. G., Deak, F., Barko, S., Bugyi, B., Orfanos, Z., Kovacs, J., Juhasz, G., Varo, G., Nyitrai, M., Sparrow, J. and Mihaly, J. (2014). DAAM is required for thin filament formation and Sarcomerogenesis during muscle development in Drosophila. PLoS Genet 10: e1004166. PubMed ID: 24586196 Wayland, M. T., Defaye, A., Rocha, J., Jayaram, S. A., Royet, J., Miguel-Aliaga, I., Leulier, F. and Cognigni, P. (2014). Spotting the differences: probing host/microbiota interactions with a dedicated software tool for the analysis of faecal outputs in Drosophila. J Insect Physiol 69: 126-135. PubMed ID: 24907675 Martorell, O., Merlos-Suarez, A., Campbell, K., Barriga, F. M., Christov, C. P., Miguel-Aliaga, I., Batlle, E., Casanova, J. and Casali, A. (2014). Conserved mechanisms of tumorigenesis in the Drosophila adult midgut. PLoS One 9: e88413. PubMed ID: 24516653 Sarraf-Zadeh, L., Christen, S., Sauer, U., Cognigni, P., Miguel-Aliaga, I., Stocker, H., Kohler, K. and Hafen, E. (2013). Local requirement of the Drosophila insulin binding protein imp-L2 in coordinating developmental progression with nutritional conditions. Dev Biol 381: 97-106. PubMed ID: 23773803 Barrio, L. and Milan, M. (2020). Regulation of Anisotropic Tissue Growth by Two Orthogonal Signaling Centers. Dev Cell 52(5): 659-672.e653. PubMed ID: 32084357 Murcia, L., Clemente-Ruiz, M., Pierre-Elies, P., Royou, A. and Milan, M. (2019). Selective Killing of RAS-Malignant Tissues by Exploiting Oncogene-Induced DNA Damage. Cell Rep 28(1): 119-131.e114. PubMed ID: 31269434 Benhra, N., Barrio, L., Muzzopappa, M. and Milan, M. (2018). Chromosomal instability induces cellular invasion in epithelial tissues. Dev Cell. PubMed ID: 30245154 Muzzopappa, M., Murcia, L. and Milan, M. (2017). Feedback amplification loop drives malignant growth in epithelial tissues. Proc Natl Acad Sci U S A. PubMed ID: 28808034 Barrio, L. and Milan, M. (2017). Boundary Dpp promotes growth of medial and lateral regions of the Drosophila wing. Elife 6. PubMed ID: 28675372 Terriente-Félix, A., Pérez, L., Bray, S.J., Nebreda, A.R. and Milán, M. (2017). Drosophila model of myeloproliferative neoplasm reveals a feed-forward loop in the JAK pathway mediated by p38 MAPK signalling. Dis Model Mech [Epub ahead of print]. PubMed ID: 28237966 Recasens-Alvarez, C., Ferreira, A. and Milán, M. (2017). JAK/STAT controls organ size and fate specification by regulating morphogen production and signalling. Nat Commun 8: 13815. PubMed ID: 28045022 Clemente-Ruiz, M., Murillo-Maldonado, J.M., Benhra, N., Barrio, L., Pérez, L., Quiroga, G., Nebreda, A.R. and Milán, M. (2016). Gene dosage imbalance contributes to chromosomal instability-induced tumorigenesis. Dev Cell 36: 290-302. PubMed ID: 26859353 Sinadinos, C., Valles-Ortega, J., Boulan, L., Solsona, E., Tevy, M. F., Marquez, M., Duran, J., Lopez-Iglesias, C., Calbo, J., Blasco, E., Pumarola, M., Milan, M. and Guinovart, J. J. (2014). Neuronal glycogen synthesis contributes to physiological aging. Aging Cell. PubMed ID: 25059425 Millard, S. S. and Pecot, M. Y. (2018). Strategies for assembling columns and layers in the Drosophila visual system. Neural Dev 13(1): 11. PubMed ID: 29875010 Kerwin, S. K., Li, J. S. S., Noakes, P. G., Shin, G. J. and Millard, S. S. (2018). Regulated Alternative Splicing of Drosophila Dscam2 Is Necessary for Attaining the Appropriate Number of Photoreceptor Synapses. Genetics 208(2): 717-728. PubMed ID: 29208630 Lim, N. R., Shohayeb, B., Zaytseva, O., Mitchell, N., Millard, S. S., Ng, D. C. H. and Quinn, L. M. (2017). Glial-Specific Functions of Microcephaly Protein WDR62 and Interaction with the Mitotic Kinase AURKA Are Essential for Drosophila Brain Growth. Stem Cell Reports 9(1): 32-41. PubMed ID: 28625535 Pickering, K., Alves-Silva, J., Goberdhan, D., Millard, T. H. (2013) Par3/Bazooka and phosphoinositides regulate actin protrusion formation during Drosophila dorsal closure and wound healing. Development. PubMed ID: 23318638"> Stramer, B., Moreira, S., Millard, T., Evans, I., Huang, C. Y., Sabet, O., Milner, M., Dunn, G., Martin, P. and Wood, W. (2010). Clasp-mediated microtubule bundling regulates persistent motility and contact repulsion in Drosophila macrophages in vivo. J Cell Biol 189: 681-689. PubMed ID: 20457764 Lenartowska, M., Isaji, M. and Miller, K. G. (2012). A pre-embedding immunogold approach reveals localization of myosin VI at the ultrastructural level in the actin cones that mediate Drosophila spermatid individualization. Protoplasma 249: 337-346. PubMed ID: 21573935 Monzo, K., Dowd, S. R., Minden, J. S. and Sisson, J. C. (2010). Proteomic analysis reveals CCT is a target of Fragile X mental retardation protein regulation in Drosophila. Dev Biol 340: 408-418. PubMed ID: 20122915 Fishilevich, E., Fitzpatrick, J. A. and Minden, J. S. (2010). pHMA, a pH-sensitive GFP reporter for cell engulfment, in Drosophila embryos, tissues, and cells. Dev Dyn 239: 559-573. PubMed ID: 20014104 Gutorov, R., Peters, M., Katz, B., Brandwine, T., Barbera, N. A., Levitan, I. and Minke, B. (2019). Modulation of Transient Receptor Potential C Channel Activity by Cholesterol. Front Pharmacol 10: 1487. PubMed ID: 31920669 Katz, B., Voolstra, O., Tzadok, H., Yasin, B., Rhodes-Modrov, E., Bartels, J. P., Strauch, L., Huber, A. and Minke, B. (2017). The latency of the light response is modulated by the phosphorylation state of Drosophila TRP at a specific site. Channels (Austin): 0. PubMed ID: 28762890 Voolstra, O., Rhodes-Mordov, E., Katz, B., Bartels, J. P., Oberegelsbacher, C., Schotthofer, S. K., Yasin, B., Tzadok, H., Huber, A. and Minke, B. (2017). The phosphorylation state of the Drosophila TRP channel modulates the frequency response to oscillating light in vivo. J Neurosci 37(15): 4213-4224. PubMed ID: 28314815 Weiss, S. and Minke, B. (2015). A new genetic model for calcium induced autophagy and ER-stress in Drosophila photoreceptor cells. Channels (Austin) 9: 14-20. PubMed ID: 25664921 Kohn, E., Katz, B., Yasin, B., Peters, M., Rhodes, E., Zaguri, R., Weiss, S. and Minke, B. (2015). Functional Cooperation between the IP3 Receptor and Phospholipase C Secures the High Sensitivity to Light of Drosophila Photoreceptors In Vivo. J Neurosci 35: 2530-2546. PubMed ID: 25673847 Weiss, S. and Minke, B. (2015). A new genetic model for calcium induced autophagy and ER-stress in Drosophila photoreceptor cells. Channels (Austin) 9: 14-20. PubMed ID: 25664921 Katz, B., Oberacker, T., Richter, D., Tzadok, H., Peters, M., Minke, B. and Huber, A. (2013). Drosophila TRP and TRPL are assembled as homomultimeric channels in vivo. J Cell Sci 126: 3121-3133. PubMed ID: 23687378 Cerqueira Campos, F., Dennis, C., Alegot, H., Fritsch, C., Isabella, A., Pouchin, P., Bardot, O., Horne-Badovinac, S. and Mirouse, V. (2020). Oriented basement membrane fibrils provide a memory for F-actin planar polarization via the Dystrophin-Dystroglycan complex during tissue elongation. Development. PubMed ID: 32156755 Couderc, J. L., Richard, G., Vachias, C. and Mirouse, V. (2017). Drosophila LKB1 is required for the assembly of the polarized actin structure that allows spermatid individualization. PLoS One 12(8): e0182279. PubMed ID: 28767695 Vachias, C., Fritsch, C., Pouchin, P., Bardot, O. and Mirouse, V. (2014). Tight coordination of growth and differentiation between germline and soma provides robustness for Drosophila egg development. Cell Rep 9: 531-541. PubMed ID: 25373901 Renaud, Y., Baillif, A., Perez, J. B., Agier, M., Mephu Nguifo, E. and Mirouse, V. (2012). DroPNet: a web portal for integrated analysis of Drosophila protein-protein interaction networks. Nucleic Acids Res 40: W134-139. PubMed ID: 22641854 Morais-de-Sa, E., Mirouse, V. and St Johnston, D. (2010). aPKC phosphorylation of Bazooka defines the apical/lateral border in Drosophila epithelial cells. Cell 141: 509-523. PubMed ID: 20434988 Alves, A. N., Sgro, C. M., Piper, M. D. W. and Mirth, C. K. (2022). Target of Rapamycin Drives Unequal Responses to Essential Amino Acid Depletion for Egg Laying in Drosophila Melanogaster. Front Cell Dev Biol 10: 822685. PubMed ID: 35252188 Chakraborty, A., Sgro, C. M. and Mirth, C. K. (2021). The proximate sources of genetic variation in body size plasticity: the relative contributions of feeding behaviour and development in Drosophila melanogaster. J Insect Physiol: 104321. PubMed ID: 34653505 Chakraborty, A., Sgro, C. M. and Mirth, C. K. (2020). Does local adaptation along a latitudinal cline shape plastic responses to combined thermal and nutritional stress? Evolution 74(9): 2073-2087. PubMed ID: 33616935 Pocas, G. M., Crosbie, A. E. and Mirth, C. K. (2020). When does diet matter? The roles of larval and adult nutrition in regulating adult size traits in Drosophila melanogaster. J Insect Physiol: 104051. PubMed ID: 32229143 Henstridge, M. A., Aulsebrook, L., Koyama, T., Johnson, T. K., Whisstock, J. C., Tiganis, T., Mirth, C. K. and Warr, C. G. (2018). Torso-like is a component of the hemolymph and regulates the insulin signalling pathway in Drosophila. Genetics [Epub ahead of print]. PubMed ID: 29440191 Shingleton, A. W., Masandika, J. R., Thorsen, L. S., Zhu, Y. and Mirth, C. K. (2017). The sex-specific effects of diet quality versus quantity on morphology in Drosophila melanogaster. R Soc Open Sci 4(9): 170375. PubMed ID: 28989746 Koyama, T. and Mirth, C. K. (2016). Growth-blocking peptides as nutrition-sensitive signals for insulin secretion and body size regulation. PLoS Biol 14: e1002392. PubMed ID: 26928023 Mendes, C. C. and Mirth, C. K. (2015). Stage-Specific Plasticity in Ovary Size Is Regulated by Insulin/Insulin-Like Growth Factor and Ecdysone Signalling in Drosophila. Genetics. PubMed ID: 26715667 Matavelli, C., Carvalho, M. J., Martins, N. E. and Mirth, C. K. (2015). Differences in larval nutritional requirements and female oviposition preference reflect the order of fruit colonization of Zaprionus indianus and Drosophila simulans. J Insect Physiol 82: 66-74. PubMed ID: 26358399 Ramanujam, P. L., Mehrotra, S., Kumar, R. P., Verma, S., Deshpande, G., Mishra, R. K. and Galande, S. (2021). Global chromatin organizer SATB1 acts as a context-dependent regulator of the Wnt/Wg target genes. Sci Rep 11(1): 3385. PubMed ID: 33564000 Ponrathnam, T., Saini, R., Banu, S. and Mishra, R. K. (2021). Drosophila Hox genes induce melanized pseudo-tumors when misexpressed in hemocytes. Sci Rep 11(1): 1838. PubMed ID: 33469139 Sureka, R. and Mishra, R. (2021). Identification of Evolutionarily Conserved Nuclear Matrix Proteins and Their Prokaryotic Origins. J Proteome Res 20(1): 518-530. PubMed ID: 33289389 Saha, P., Sowpati, D. T., Soujanya, M., Srivastava, I. and Mishra, R. K. (2020). Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes. Epigenetics Chromatin 13(1): 41. PubMed ID: 33028366 Paddibhatla, I., Gautam, D. K. and Mishra, R. K. (2019). SETDB1 modulates the differentiation of both the crystal cells and the lamellocytes in Drosophila. Dev Biol. PubMed ID: 31422102 Srivastava, S., Avvaru, A. K., Sowpati, D. T. and Mishra, R. K. (2019). Patterns of microsatellite distribution across eukaryotic genomes. BMC Genomics 20(1): 153. PubMed ID: 30795733 Saha, P., Sowpati, D. T. and Mishra, R. K. (2019). Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes. Genomics 111(2): 177-185. PubMed ID: 29432976 Hamid, R., Hajirnis, N., Kushwaha, S., Saleem, S., Kumar, V. and Mishra, R. K. (2018). Drosophila Choline transporter non-canonically regulates pupal eclosion and NMJ integrity through a neuronal subset of mushroom body. Dev Biol. PubMed ID: 30529058 Varma, P. and Mishra, R. K. (2018). Little imaginal discs, a Trithorax group member, is a constituent of nuclear matrix of Drosophila melanogaster embryos. J Biosci 43(4): 621-633. PubMed ID: 30207309 Vasquez-Procopio, J., Rajpurohit, S. and Missirlis, F. (2020). Cuticle darkening correlates with increased body copper content in Drosophila melanogaster. Biometals 33(6): 293-303. PubMed ID: 33026606 Hernandez-Gallardo, A. K. and Missirlis, F. (2020). Cellular iron sensing and regulation: Nuclear IRP1 extends a classic paradigm. Biochim Biophys Acta Mol Cell Res: 118705. PubMed ID: 32199885 Vasquez-Procopio, J., Osorio, B., Cortes-Martinez, L., Hernandez-Hernandez, F., Medina-Contreras, O., Rios-Castro, E., Comjean, A., Li, F., Hu, Y., Mohr, S., Perrimon, N. and Missirlis, F. (2019). Intestinal response to dietary manganese depletion in Drosophila. Metallomics. PubMed ID: 31799578 Marelja, Z., Leimkuhler, S. and Missirlis, F. (2018). Iron sulfur and molybdenum cofactor enzymes regulate the Drosophila life cycle by controlling cell metabolism. Front Physiol 9: 50. PubMed ID: 29491838 Rosas-Arellano, A., Vasquez-Procopio, J., Gambis, A., Blowes, L. M., Steller, H., Mollereau, B. and Missirlis, F. (2016). Ferritin Assembly in Enterocytes of Drosophila melanogaster. Int J Mol Sci 17 [Epub ahead of print]. PubMed ID: 26861293 Llorens, J. V., Metzendorf, C., Missirlis, F. and Lind, M. I. (2015). Mitochondrial iron supply is required for the developmental pulse of ecdysone biosynthesis that initiates metamorphosis in Drosophila melanogaster. J Biol Inorg Chem. PubMed ID: 26468126 Rempoulakis, P., Afshar, N., Osorio, B., Barajas-Aceves, M., Szular, J., Ahmad, S., Dammalage, T., Tomas, U. S., Nemny-Lavy, E., Salomon, M., Vreysen, M. J., Nestel, D. and Missirlis, F. (2014). Conserved metallomics in two insect families evolving separately for a hundred million years. Biometals 27: 1323-1335. PubMed ID: 25298233 González-Morales, N., Mendoza-Ortíz, M.Á., Blowes, L.M., Missirlis, F. and Riesgo-Escovar, J.R. (2015). Ferritin is required in multiple tissues during Drosophila melanogaster development. PLoS One 10: e0133499. PubMed ID: 26192321 Kosmidis, S., Missirlis, F., Botella, J. A., Schneuwly, S., Rouault, T. A. and Skoulakis, E. M. (2014). Behavioral decline and premature lethality upon pan-neuronal ferritin overexpression in Drosophila infected with a virulent form of Wolbachia. Front Pharmacol 5: 66. PubMed ID: 24772084 Yamauchi, T., Oi, A., Kosakamoto, H., Akuzawa-Tokita, Y., Murakami, T., Mori, H., Miura, M. and Obata, F. (2020). Gut Bacterial Species Distinctively Impact Host Purine Metabolites during Aging in Drosophila. iScience 23(9): 101477. PubMed ID: 32916085 Fujisawa, Y., Shinoda, N., Chihara, T. and Miura, M. (2020). ROS Regulate Caspase-Dependent Cell Delamination without Apoptosis in the Drosophila Pupal Notum. iScience 23(8): 101413. PubMed ID: 32791328 Kosakamoto, H., Yamauchi, T., Akuzawa-Tokita, Y., Nishimura, K., Soga, T., Murakami, T., Mori, H., Yamamoto, K., Miyazaki, R., Koto, A., Miura, M. and Obata, F. (2020). Local Necrotic Cells Trigger Systemic Immune Activation via Gut Microbiome Dysbiosis in Drosophila. Cell Rep 32(3): 107938. PubMed ID: 32698005 Tsuda-Sakurai, K., Kimura, M. and Miura, M. (2019). Diphthamide modification of eEF2 is required for gut tumor-like hyperplasia induced by oncogenic Ras. Genes Cells. PubMed ID: 31828897 Shinoda, N., Hanawa, N., Chihara, T., Koto, A. and Miura, M. (2019). Dronc-independent basal executioner caspase activity sustains Drosophila imaginal tissue growth. Proc Natl Acad Sci U S A 116(41): 20539-20544. PubMed ID: 31548372 Fujisawa, Y., Kosakamoto, H., Chihara, T. and Miura, M. (2019). Non-apoptotic function of Drosophila caspase activation in epithelial thorax closure and wound healing. Development 146(4). PubMed ID: 30770378 Obata, F., Tsuda-Sakurai, K., Yamazaki, T., Nishio, R., Nishimura, K., Kimura, M., Funakoshi, M. and Miura, M. (2018). Nutritional control of stem cell division through S-Adenosylmethionine in Drosophila intestine. Dev Cell 44(6): 741-751.e743. PubMed ID: 29587144 Kosakamoto, H., Fujisawa, Y., Obata, F. and Miura, M. (2018). High expression of A-type lamin in the leading front is required for Drosophila thorax closure. Biochem Biophys Res Commun 499(2): 209-214. PubMed ID: 29559239 Matsukawa, K., Hashimoto, T., Matsumoto, T., Ihara, R., Chihara, T., Miura, M., Wakabayashi, T. and Iwatsubo, T. (2016). Familial ALS-linked mutations in Profilin 1 exacerbate TDP-43-induced degeneration in the retina of Drosophila melanogaster through an increase in the cytoplasmic localization of TDP-43. J Biol Chem [Epub ahead of print]. PubMed ID: 27634045 Sakuma, C., Saito, Y., Umehara, T., Kamimura, K., Maeda, N., Mosca, T. J., Miura, M. and Chihara, T. (2016). The Strip-Hippo pathway regulates synaptic terminal formation by modulating actin organization at the Drosophila neuromuscular synapses. Cell Rep 16: 2289-2297. PubMed ID: 27545887 Medina-Yanez, I., Olivares, G. H., Vega-Macaya, F., Mlodzik, M. and Olguin, P. (2020). Phosphatidic acid increases Notch signalling by affecting Sanpodo trafficking during Drosophila sensory organ development. Sci Rep 10(1): 21731. PubMed ID: 33303974 Humphries, A. C., Narang, S. and Mlodzik, M. (2020). Mutations associated with human neural tube defects display disrupted planar cell polarity in Drosophila. Elife 9. PubMed ID: 32234212 Koca, Y., Housden, B. E., Gault, W. J., Bray, S. J. and Mlodzik, M. (2019). Notch signaling coordinates ommatidial rotation in the Drosophila eye via transcriptional regulation of the EGF-Receptor ligand Argos. Sci Rep 9(1): 18628. PubMed ID: 31819141 Domingos, P. M., Jenny, A., Combie, K. F., Del Alamo, D., Mlodzik, M., Steller, H. and Mollereau, B. (2019). Regulation of Numb during planar cell polarity establishment in the Drosophila eye. Mech Dev: 103583. PubMed ID: 31678471 Thuveson, M., Gaengel, K., Collu, G. M., Chin, M. L., Singh, J. and Mlodzik, M. (2019). Integrins are required for synchronous ommatidial rotation in the Drosophila eye linking planar cell polarity signalling to the extracellular matrix. Open Biol 9(8): 190148. PubMed ID: 31409231 Vuong, L. T., Iomini, C., Balmer, S., Esposito, D., Aaronson, S. A. and Mlodzik, M. (2018). Kinesin-2 and IFT-A act as a complex promoting nuclear localization of beta-catenin during Wnt signalling. Nat Commun 9(1): 5304. PubMed ID: 30546012 Bigenzahn, J. W., Collu, G. M., Kartnig, F., Pieraks, M., Vladimer, G. I., Heinz, L. X., Sedlyarov, V., Schischlik, F., Fauster, A., Rebsamen, M., Parapatics, K., Blomen, V. A., Muller, A. C., Winter, G. E., Kralovics, R., Brummelkamp, T. R., Mlodzik, M. and Superti-Furga, G. (2018). LZTR1 is a regulator of RAS ubiquitination and signaling. Science 362(6419): 1171-1177. PubMed ID: 30442766 Bala Tannan, N., Collu, G., Humphries, A. C., Serysheva, E., Weber, U. and Mlodzik, M. (2018). AKAP200 promotes Notch stability by protecting it from Cbl/lysosome-mediated degradation in Drosophila melanogaster. PLoS Genet 14(1): e1007153. PubMed ID: 29309414 Weber, U. and Mlodzik, M. (2017). APC/CFzr/Cdh1-dependent regulation of planar cell polarity establishment via Nek2 kinase acting on Dishevelled. Dev Cell 40(1): 53-66. PubMed ID: 28041906 Vega-Macaya, F., Manieu, C., Valdivia, M., Mlodzik, M. and Olguin, P. (2016). Establishment of the muscle-tendon junction during thorax morphogenesis in Drosophila requires the Rho-kinase. Genetics. PubMed ID: 27585845 Corgiat, E. B., List, S. M., Rounds, J. C., Corbett, A. H. and Moberg, K. H. (2021). The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain. J Biol Chem 297(1): 100877. PubMed ID: 34139237 Lee, W. H., Corgiat, E. B., Rounds, J. C., Shepherd, Z., Corbett, A. H. and Moberg, K. H. (2020). A Genetic Screen Links the Disease-Associated Nab2 RNA-Binding Protein to the Planar Cell Polarity Pathway in Drosophila melanogaster. G3 (Bethesda). PubMed ID: 32817074 Morton, D. J., Jalloh, B., Kim, L., Kremsky, I., Nair, R. J., Nguyen, K. B., Rounds, J. C., Sterrett, M. C., Brown, B., Le, T., Karkare, M. C., McGaughey, K. D., Sheng, S., Leung, S. W., Fasken, M. B., Moberg, K. H. and Corbett, A. H. (2020). A Drosophila model of Pontocerebellar Hypoplasia reveals a critical role for the RNA exosome in neurons. PLoS Genet 16(7): e1008901. PubMed ID: 32645003 Bienkowski, R. S., Banerjee, A., Rounds, J. C., Rha, J., Omotade, O. F., Gross, C., Morris, K. J., Leung, S. W., Pak, C., Jones, S. K., Santoro, M. R., Warren, S. T., Zheng, J. Q., Bassell, G. J., Corbett, A. H. and Moberg, K. H. (2017). The conserved, disease-associated RNA binding protein dNab2 interacts with the Fragile X Protein ortholog in Drosophila neurons. Cell Rep 20(6): 1372-1384. PubMed ID: 28793261 Barron, D.A. and Moberg, K. (2016). Inverse regulation of two classic Hippo pathway target genes in Drosophila by the dimerization hub protein Ctp. Sci Rep 6: 22726. PubMed ID: 26972460 Zhang, C., Robinson, B. S., Xu, W., Yang, L., Yao, B., Zhao, H., Byun, P. K., Jin, P., Veraksa, A. and Moberg, K. H. (2015). The ecdysone receptor coactivator Taiman links Yorkie to transcriptional control of germline stem cell factors in somatic tissue. Dev Cell 34: 168-180. PubMed ID: 26143992 Kelly, S.M., Bienkowski, R., Banerjee, A., Melicharek, D.J., Brewer, Z.A., Marenda, D.R., Corbett, A.H. and Moberg, K.H. (2015). The Drosophila ortholog of the ZC3H14 RNA binding protein acts within neurons to pattern axon projection in the developing brain. Dev Neurobiol [Epub ahead of print]. PubMed ID: 25980665 Gross, C., Chang, C.W., Kelly, S.M., Bhattacharya, A., McBride, S.M., Danielson, S.W., Jiang, M.Q., Chan, C.B., Ye, K., Gibson, J.R., Klann, E., Jongens, T.A., Moberg, K.H., Huber, K.M. and Bassell, G.J. (2015). Increased expression of the PI3K enhancer PIKE mediates deficits in synaptic plasticity and behavior in Fragile X syndrome. Cell Rep [Epub ahead of print]. PubMed ID: 25921541 Xu, P., Tan, H., Duong, D. M., Yang, Y., Kupsco, J., Moberg, K. H., Li, H., Jin, P. and Peng, J. (2012). Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifications. J Proteome Res 11: 4403-4412. PubMed ID: 22830426 Dhillon, A., Chowdhury, T., Morbey, Y. E. and Moehring, A. J. (2020). Reproductive consequences of an extra long-term sperm storage organ. BMC Evol Biol 20(1): 159. PubMed ID: 33256600 Ward, H. and Moehring, A. J. (2020). Genes underlying species differences in CHC production between Drosophila melanogaster and D. simulans. Genome. PubMed ID: 33211537 Chowdhury, T., Calhoun, R. M., Bruch, K. and Moehring, A. J. (2020). The fruitless gene affects female receptivity and species isolation. Proc Biol Sci 287(1923): 20192765. PubMed ID: 32208837 Kanippayoor, R. L., Alpern, J. H. M. and Moehring, A. J. (2020). A common suite of cellular abnormalities and spermatogenetic errors in sterile hybrid males in Drosophila. Proc Biol Sci 287(1919): 20192291. PubMed ID: 31964309 Austin, C. J. and Moehring, A. J. (2019). Local thermal adaptation detected during multiple life stages across populations of Drosophila melanogaster. J Evol Biol. PubMed ID: 31454449 Nguyen, T. T. X. and Moehring, A. J. (2019). Males from populations with higher competitive mating success produce sons with lower fitness. J Evol Biol. PubMed ID: 30811733 Alpern, J. H. M., Asselin, M. M. and Moehring, A. J. (2019). Identification of a novel sperm class and its role in fertilization in Drosophila. J Evol Biol 32(3): 259-266. PubMed ID: 30484924 Nguyen, T. T. X. and Moehring, A. J. (2018). A male's seminal fluid increases later competitors' productivity. J Evol Biol. PubMed ID: 30007107 Pardy, J. A., Rundle, H. D., Bernards, M. A. and Moehring, A. J. (2018). The genetic basis of female pheromone differences between Drosophila melanogaster and D. simulans. Heredity (Edinb). Pubmed ID: 29777168 Nguyen, T. T. and Moehring, A. J. (2017). Cross-generational comparison of reproductive success in recently caught strains of Drosophila melanogaster. BMC Evol Biol 17(1): 41. PubMed ID: 28166714 Nguyen, T. T. and Moehring, A. J. (2015). Accurate Alternative Measurements for Female Lifetime Reproductive Success in Drosophila melanogaster. PLoS One 10: e0116679. PubMed ID: 26125633 Ding, G., Xiang, X., Hu, Y., Xiao, G., Chen, Y., Binari, R., Comjean, A., Li, J., Rushworth, E., Fu, Z., Mohr, S. E., Perrimon, N. and Song, W. (2021). Coordination of tumor growth and host wasting by tumor-derived Upd3. Cell Rep 36(7): 109553. PubMed ID: 34407411 Xia, B., Amador, G., Viswanatha, R., Zirin, J., Mohr, S. E. and Perrimon, N. (2020). CRISPR-based engineering of gene knockout cells by homology-directed insertion in polyploid Drosophila S2R+ cells. Nat Protoc 15(10): 3478-3498. PubMed ID: 32958931 Kanca, O., Zirin, J., Garcia-Marques, J., Knight, S. M., Yang-Zhou, D., Amador, G., Chung, H., Zuo, Z., Ma, L., He, Y., Lin, W. W., Fang, Y., Ge, M., Yamamoto, S., Schulze, K. L., Hu, Y., Spradling, A. C., Mohr, S. E., Perrimon, N. and Bellen, H. J. (2019). An efficient CRISPR-based strategy to insert small and large fragments of DNA using short homology arms. Elife 8. PubMed ID: 31674908 Hu, Y., Comjean, A., Perrimon, N. and Mohr, S. E. (2017). The Drosophila Gene Expression Tool (DGET) for expression analyses. BMC Bioinformatics 18(1): 98. PubMed ID: 28187709 Hu, Y., Comjean, A., Perkins, L. A., Perrimon, N. and Mohr, S. E. (2015). GLAD: an online database of gene list annotation for Drosophila. J Genomics 3: 75-81. PubMed ID: 26157507 Yilmazel, B., Hu, Y., Sigoillot, F., Smith, J. A., Shamu, C. E., Perrimon, N. and Mohr, S. E. (2014). Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis. BMC Bioinformatics 15: 192. PubMed ID: 24934636 Mohr, S. E. (2014). RNAi screening in Drosophila cells and in vivo. Methods. PubMed ID: 24576618 Vinayagam, A., Zirin, J., Roesel, C., Hu, Y., Yilmazel, B., Samsonova, A. A., Neumuller, R. A., Mohr, S. E. and Perrimon, N. (2013). Integrating protein-protein interaction networks with phenotypes reveals signs of interactions. Nat Methods. PubMed ID: 24240319 Hu, Y., Sopko, R., Foos, M., Kelley, C., Flockhart, I., Ammeux, N., Wang, X., Perkins, L., Perrimon, N. and Mohr, S. E. (2013). FlyPrimerBank: An Online Database for Drosophila melanogaster Gene Expression Analysis and Knockdown Evaluation of RNAi Reagents. G3 (Bethesda). PubMed ID: 23893746 Bergwitz, C., Wee, M. J., Sinha, S., Huang, J., DeRobertis, C., Mensah, L. B., Cohen, J., Friedman, A., Kulkarni, M., Hu, Y., Vinayagam, A., Schnall-Levin, M., Berger, B., Perkins, L. A., Mohr, S. E. and Perrimon, N. (2013). Genetic determinants of phosphate response in Drosophila. PLoS One 8: e56753. PubMed ID: 23520455 Girard, V., Jollivet, F., Knittelfelder, O., Celle, M., Arsac, J. N., Chatelain, G., Van den Brink, D. M., Baron, T., Shevchenko, A., Kuhnlein, R. P., Davoust, N. and Mollereau, B. (2021). Abnormal accumulation of lipid droplets in neurons induces the conversion of alpha-Synuclein to proteolytic resistant forms in a Drosophila model of Parkinson's disease. PLoS Genet 17(11): e1009921. PubMed ID: 34788284 Girard, V., Goubard, V., Querenet, M., Seugnet, L., Pays, L., Nataf, S., Dufourd, E., Cluet, D., Mollereau, B. and Davoust, N. (2020). Spen modulates lipid droplet content in adult Drosophila glial cells and protects against paraquat toxicity. Sci Rep 10(1): 20023. PubMed ID: 33208773 Domingos, P. M., Jenny, A., Combie, K. F., Del Alamo, D., Mlodzik, M., Steller, H. and Mollereau, B. (2019). Regulation of Numb during planar cell polarity establishment in the Drosophila eye. Mech Dev: 103583. PubMed ID: 31678471 Robin, M., Issa, A. R., Santos, C. C., Napoletano, F., Petitgas, C., Chatelain, G., Ruby, M., Walter, L., Birman, S., Domingos, P. M., Calvi, B. R. and Mollereau, B. (2019). Drosophila p53 integrates the antagonism between autophagy and apoptosis in response to stress. Autophagy 15(5): 771-784. PubMed ID: 30563404 Betsch, L., Boltz, V., Brioudes, F., Pontier, G., Girard, V., Savarin, J., Wipperman, B., Chambrier, P., Tissot, N., Benhamed, M., Mollereau, B., Raynaud, C., Bendahmane, M. and Szecsi, J. (2019). TCTP and CSN4 control cell cycle progression and development by regulating CULLIN1 neddylation in plants and animals. PLoS Genet 15(1): e1007899. PubMed ID: 30695029 Robin, M., Issa, A. R., Santos, C. C., Napoletano, F., Petitgas, C., Chatelain, G., Ruby, M., Walter, L., Birman, S., Domingos, P. M., Calvi, B. R. and Mollereau, B. (2018). Drosophila p53 integrates the antagonism between autophagy and apoptosis in response to stress. Autophagy. PubMed ID: 30563404 Rosas-Arellano, A., Vasquez-Procopio, J., Gambis, A., Blowes, L. M., Steller, H., Mollereau, B. and Missirlis, F. (2016). Ferritin Assembly in Enterocytes of Drosophila melanogaster. Int J Mol Sci 17 [Epub ahead of print]. PubMed ID: 26861293 Querenet, M., Danjoy, M. L., Mollereau, B. and Davoust, N. (2015). Expression of dengue virus NS3 protein in Drosophila alters its susceptibility to infection. Fly (Austin) 9: 1-6. PubMed ID: 26267447 Querenet, M., Goubard, V., Chatelain, G., Davoust, N. and Mollereau, B. (2015). Spen is required for pigment cell survival during pupal development in Drosophila. Dev Biol [Epub ahead of print]. PubMed ID: 25872184 Ducuing, A., Keeley, C., Mollereau, B. and Vincent, S. (2015).A DPP-mediated feed-forward loop canalizes morphogenesis during Drosophila dorsal closure. J Cell Biol 208: 239-248. PubMed ID: 25601405 Monnier, V., Llorens, J. V. and Navarro, J. A. (2018). Impact of Drosophila Models in the Study and Treatment of Friedreich's Ataxia. Int J Mol Sci 19(7). PubMed ID: 29986523 Palandri, A., Martin, E., Russi, M., Rera, M., Tricoire, H. and Monnier, V. (2018). Identification of cardioprotective drugs by medium-scale in vivo pharmacological screening on a Drosophila cardiac model of Friedreich's ataxia. Dis Model Mech 11(7). PubMed ID: 29898895 Zahoor, M. K., Poidevin, M., Lecerf, C., Garrido, D. and Montagne, J. (2019). A Drosophila genetic screen for suppressors of S6kinase-dependent growth identifies the F-box subunit Archipelago/FBXW7. Mol Genet Genomics. PubMed ID: 30656413 Garrido, D., Rubin, T., Poidevin, M., Maroni, B., Le Rouzic, A., Parvy, J. P. and Montagne, J. (2015). Fatty Acid Synthase Cooperates with Glyoxalase 1 to Protect against Sugar Toxicity. PLoS Genet 11: e1004995. PubMed ID: 25692475 Parvy, J. P., Wang, P., Garrido, D., Maria, A., Blais, C., Poidevin, M. and Montagne, J. (2014). Forward and feedback regulation of cyclic steroid production in Drosophila melanogaster. Development 141: 3955-3965. PubMed ID: 25252945 Parvy, J. P., Napal, L., Rubin, T., Poidevin, M., Perrin, L., Wicker-Thomas, C. and Montagne, J. (2012). Drosophila melanogaster Acetyl-CoA-carboxylase sustains a fatty acid-dependent remote signal to waterproof the respiratory system. PLoS Genet 8: e1002925. PubMed ID: 22956916 Afonso, O., Castellani, C. M., Cheeseman, L. P., Ferreira, J. G., Orr, B., Ferreira, L. T., Chambers, J. J., Morais-de-Sa, E., Maresca, T. J. and Maiato, H. (2019). Spatiotemporal control of mitotic exit during anaphase by an aurora B-Cdk1 crosstalk. Elife 8. PubMed ID: 31424385 Osswald, M., Santos, A. F. and Morais-de-Sa, E. (2019). Light-Induced Protein Clustering for Optogenetic Interference and Protein Interaction Analysis in Drosophila S2 Cells. Biomolecules 9(2). PubMed ID: 30759894 Moreira, S., Osswald, M., Ventura, G., Goncalves, M., Sunkel, C. E. and Morais-de-Sa, E. (2019). PP1-Mediated Dephosphorylation of Lgl Controls Apical-basal Polarity. Cell Rep 26(2): 293-301 e297. PubMed ID: 30625311 Wurmser, F., Mary-Huard, T., Daudin, J. J., Joly, D. and Montchamp-Moreau, C. (2013). Variation of Gene Expression Associated with Colonisation of an Anthropized Environment: Comparison between African and European Populations of. PLoS One 8: e79750. PubMed ID: 24260296 Bastide, H., Gerard, P. R., Ogereau, D., Cazemajor, M. and Montchamp-Moreau, C. (2013). Local dynamics of a fast-evolving sex-ratio system in Drosophila simulans. Mol Ecol 22: 5352-5367. PubMed ID: 24118375 Fouvry, L., Ogereau, D., Berger, A., Gavory, F. and Montchamp-Moreau, C. (2011). Sequence Analysis of the Segmental Duplication Responsible for Paris Sex-Ratio Drive in Drosophila simulans. G3 (Bethesda) 1: 401-410. PubMed ID: 22384350 Bastide, H., Cazemajor, M., Ogereau, D., Derome, N., Hospital, F. and Montchamp-Moreau, C. (2011). Rapid rise and fall of selfish sex-ratio X chromosomes in Drosophila simulans: spatiotemporal analysis of phenotypic and molecular data. Mol Biol Evol 28: 2461-2470. PubMed ID: 21498605 Wurmser, F., Ogereau, D., Mary-Huard, T., Loriod, B., Joly, D. and Montchamp-Moreau, C. (2011). Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids. Genetica 139: 465-477. PubMed ID: 21424276 Ganguly, A., Chandel, A., Turner, H., Wang, S., Liman, E. R. and Montell, C. (2021). Requirement for an Otopetrin-like protein for acid taste in Drosophila. Proc Natl Acad Sci U S A 118(51). PubMed ID: 34911758 Li, Q. and Montell, C. (2021). Mechanism for food texture preference based on grittiness. Curr Biol. PubMed ID: 33657409 Sun, G., Ding, X. A., Argaw, Y., Guo, X. and Montell, D. J. (2020). Akt1 and dCIZ1 promote cell survival from apoptotic caspase activation during regeneration and oncogenic overgrowth. Nat Commun 11(1): 5726. PubMed ID: 33184261 Miao, G., Godt, D. and Montell, D. J. (2020). Integration of Migratory Cells into a New Site In Vivo Requires Channel-Independent Functions of Innexins on Microtubules. Dev Cell. PubMed ID: 32668209 Zhang, J., Luo, J., Chen, J., Dai, J. and Montell, C. (2020). The Role of Y Chromosome Genes in Male Fertility in Drosophila melanogaster. Genetics. PubMed ID: 32404399 Chen, Z. and Montell, C. (2020). A Family of Auxiliary Subunits of the TRP Cation Channel Encoded by the Complex inaF Locus. Genetics. PubMed ID: 32434796 Li, Q., DeBeaubien, N. A., Sokabe, T. and Montell, C. (2020). Temperature and Sweet Taste Integration in Drosophila. Curr Biol. PubMed ID: 32330421 Liu, W., Ganguly, A., Huang, J., Wang, Y., Ni, J. D., Gurav, A. S., Aguilar, M. A. and Montell, C. (2019). Neuropeptide F regulates courtship in Drosophila through a male-specific neuronal circuit. Elife 8. PubMed ID: 31403399 Rimal, S., Sang, J., Poudel, S., Thakur, D., Montell, C. and Lee, Y. (2019). Mechanism of acetic acid gustatory repulsion in Drosophila. Cell Rep 26(6): 1432-1442.e1434. PubMed ID: 30726729 Ni, J. D., Gurav, A. S., Liu, W., Ogunmowo, T. H., Hackbart, H., Elsheikh, A., Verdegaal, A. A. and Montell, C. (2019). Differential regulation of the Drosophila sleep homeostat by circadian and arousal inputs. Elife 8. PubMed ID: 30719975 Liu, J., Sokabe, T. and Montell, C. (2018). A temperature gradient assay to determine thermal preferences of Drosophila larvae. J Vis Exp(136). PubMed ID: 29985331 Easwaran, S., Van Ligten, M., Kui, M. and Montell, D. J. (2022). Enhanced germline stem cell longevity in Drosophila diapause. Nat Commun 13(1): 711. PubMed ID: 35132083 Lowe, D. D. and Montell, D. J. (2021). Unconventional translation initiation factor EIF2A is required for Drosophila spermatogenesis. Dev Dyn. PubMed ID: 34278643 Dai, W., Guo, X., Cao, Y., Mondo, J. A., Campanale, J. P., Montell, B. J., Burrous, H., Streichan, S., Gov, N., Rappel, W. J. and Montell, D. J. (2020). Tissue topography steers migrating Drosophila border cells. Science 370(6519): 987-990. PubMed ID: 33214282 Mishra, A. K., Mondo, J. A., Campanale, J. P. and Montell, D. J. (2019). Coordination of protrusion dynamics within and between collectively migrating border cells by myosin II. Mol Biol Cell 30(19): 2490-2502. PubMed ID: 31390285 Chang, Y. C., Wu, J. W., Hsieh, Y. C., Huang, T. H., Liao, Z. M., Huang, Y. S., Mondo, J. A., Montell, D. and Jang, A. C. (2018). Rap1 Negatively Regulates the Hippo Pathway to Polarize Directional Protrusions in Collective Cell Migration. Cell Rep 22(8): 2160-2175. PubMed ID: 29466741 Manning, L., Sheth, J., Bridges, S., Saadin, A., Odinammadu, K., Andrew, D., Spencer, S., Montell, D. and Starz-Gaiano, M. (2017). A hormonal cue promotes timely follicle cell migration by modulating transcription profiles. Mech Dev. PubMed ID: 28610887 Cho, A., Kato, M., Whitwam, T., Kim, J.H. and Montell, D.J. (2016). An atypical tropomyosin in Drosophila with intermediate filament-like properties. Cell Rep [Epub ahead of print]. PubMed ID: 27396338 Ding, A. X., Sun, G., Argaw, Y. G., Wong, J. O., Easwaran, S. and Montell, D. J. (2016). CasExpress reveals widespread and diverse patterns of cell survival of caspase-3 activation during development. Elife 5. PubMed ID: 27058168 Xiang, W., Zhang, D. and Montell, D. J. (2015). Tousled-like kinase regulates cytokine-mediated communication between cooperating cell types during collective border cell migration. Mol Biol Cell. PubMed ID: 26510500 Hoekstra, L. A., Julick, C. R., Mika, K. M. and Montooth, K. L. (2018). Energy demand and the context-dependent effects of genetic interactions underlying metabolism. Evol Lett 2(2): 102-113. PubMed ID: 30283668 Lockwood, B. L., Julick, C. R. and Montooth, K. L. (2017). Maternal loading of a small heat shock protein increases embryo thermal tolerance in Drosophila melanogaster. J Exp Biol 220(Pt 23): 4492-4501. PubMed ID: 29097593 Cooper, B.S., Burrus, C.R., Ji, C., Hahn, M.W. and Montooth, K.L. (2015). Similar efficacies of selection shape mitochondrial and nuclear genes in both Drosophila melanogaster and Homo sapiens. G3 (Bethesda) [Epub ahead of print]. PubMed ID: 26297726 Cooper, B. S., Hammad, L. A. and Montooth, K. L. (2014). Thermal adaptation of cellular membranes in natural populations of Drosophila melanogaster. Funct Ecol 28: 886-894. PubMed ID: 25382893 Cooper, B. S., Hammad, L. A. and Montooth, K. L. (2014). Thermal adaptation of cellular membranes in natural populations of. Funct Ecol 28: 886-894. PubMed ID: 25382893 Hoekstra, L. A., Siddiq, M. A. and Montooth, K. L. (2013). Pleiotropic Effects of a Mitochondrial-Nuclear Incompatibility Depend Upon the Accelerating Effect of Temperature in Drosophila. Genetics. PubMed ID: 24026098 Hoekstra, L. A., Montooth, K. L. (2013) Inducing extra copies of the Hsp70 gene in Drosophila melanogaster increases energetic demand. BMC Evol Biol 13: 68. PubMed ID: 23510136 Meiklejohn, C. D., Holmbeck, M. A., Siddiq, M. A., Abt, D. N., Rand, D. M., Montooth, K. L. (2013) An Incompatibility between a Mitochondrial tRNA and Its Nuclear-Encoded tRNA Synthetase Compromises Development and Fitness in Drosophila. PLoS Genet 9: e1003238. PubMed ID: 23382693 Meiklejohn, C. D., Holmbeck, M. A., Siddiq, M. A., Abt, D. N., Rand, D. M. and Montooth, K. L. (2013). An Incompatibility between a Mitochondrial tRNA and Its Nuclear-Encoded tRNA Synthetase Compromises Development and Fitness in Drosophila. PLoS Genet 9: e1003238. PubMed ID: 23382693 Madan, E., Pelham, C. J., Nagane, M., Parker, T. M., Canas-Marques, R., Fazio, K., Shaik, K., Yuan, Y., Henriques, V., Galzerano, A., Yamashita, T., Pinto, M. A. F., Palma, A. M., Camacho, D., Vieira, A., Soldini, D., Nakshatri, H., Post, S. R., Rhiner, C., Yamashita, H., Accardi, D., Hansen, L. A., Carvalho, C., Beltran, A. L., Kuppusamy, P., Gogna, R. and Moreno, E. (2019). Flower isoforms promote competitive growth in cancer. Nature. PubMed ID: 31341286 Coelho, D. S., Schwartz, S., Merino, M. M., Hauert, B., Topfel, B., Tieche, C., Rhiner, C. and Moreno, E. (2018). Culling less fit neurons protects against Amyloid-beta-induced brain damage and cognitive and motor decline. Cell Rep 25(13): 3661-3673. PubMed ID: 30590040 Levayer, R., Dupont, C. and Moreno, E. (2016). Tissue Crowding Induces Caspase-Dependent Competition for Space. Curr Biol [Epub ahead of print]. PubMed ID: 26898471 Casas-Tinto, S., Lolo, F. N. and Moreno, E. (2015). Active JNK-dependent secretion of Drosophila Tyrosyl-tRNA synthetase by loser cells recruits haemocytes during cell competition. Nat Commun 6: 10022. PubMed ID: 26658841 Moreno, E., Fernandez-Marrero, Y., Meyer, P. and Rhiner, C. (2015). Brain regeneration in Drosophila involves comparison of neuronal fitness. Curr Biol [Epub ahead of print]. PubMed ID: 25754635 Merino, M. M., Rhiner, C., Lopez-Gay, J. M., Buechel, D., Hauert, B. and Moreno, E. (2015). Elimination of unfit cells maintains tissue health and prolongs lifespan. Cell. PubMed ID: 25601460 Merino, M. M., Rhiner, C., Portela, M. and Moreno, E. (2013). "Fitness Fingerprints" Mediate Physiological Culling of Unwanted Neurons in Drosophila. Curr Biol. PubMed ID: 23810538 Fernandez-Hernandez, I., Rhiner, C. and Moreno, E. (2013). Adult Neurogenesis in Drosophila. Cell Rep. PubMed ID: 23791523 Portela, M., Casas-Tinto, S., Rhiner, C., Lopez-Gay, J. M., Dominguez, O., Soldini, D. and Moreno, E. (2010). Drosophila SPARC is a self-protective signal expressed by loser cells during cell competition. Dev Cell 19: 562-573. PubMed ID: 20951347 Rhiner, C., Lopez-Gay, J. M., Soldini, D., Casas-Tinto, S., Martin, F. A., Lombardia, L. and Moreno, E. (2010). Flower forms an extracellular code that reveals the fitness of a cell to its neighbors in Drosophila. Dev Cell 18: 985-998. PubMed ID: 20627080 Plazaola-Sasieta, H., Fernandez-Pineda, A., Zhu, Q. and Morey, M. (2017). Untangling the wiring of the Drosophila visual system: developmental principles and molecular strategies. J Neurogenet 31(4): 231-249. PubMed ID: 29078717 Morey, M. (2017). Dpr-DIP matching expression in Drosophila synaptic pairs. Fly (Austin) 11(1): 19-26. PubMed ID: 27450981 Tan, L., Zhang, K. X., Pecot, M. Y., Nagarkar-Jaiswal, S., Lee, P. T., Takemura, S. Y., McEwen, J. M., Nern, A., Xu, S., Tadros, W., Chen, Z., Zinn, K., Bellen, H. J., Morey, M. and Zipursky, S. L. (2015). Ig Superfamily Ligand and Receptor Pairs Expressed in Synaptic Partners in Drosophila. Cell 163(7): 1756-1769. PubMed ID: 26687360 Delos Santos, K., Kim, M., Yergeau, C., Jean, S. and Moon, N. S. (2019). Pleiotropic role of Drosophila phosphoribosyl pyrophosphate synthetase in autophagy and lysosome homeostasis. PLoS Genet 15(9): e1008376. PubMed ID: 31487280 Kim, M., Tang, J. P. and Moon, N. S. (2018). An alternatively spliced form affecting the Marked Box domain of Drosophila E2F1 is required for proper cell cycle regulation. PLoS Genet 14(2): e1007204. PubMed ID: 29420631 Bradley-Gill, M.R., Kim, M., Feingold, D., Yergeau, C., Houde, J. and Moon, N.S. (2016). Alternate transcripts of the Drosophila "activator" E2F are necessary for maintenance of cell cycle exit during development. Dev Biol [Epub ahead of print]. PubMed ID: 26859702 Collins, H. and Moon, N. S. (2013). The Components of Drosophila Histone Chaperone dCAF-1 Are Required for the Cell Death Phenotype Associated with rbf1 Mutation. G3 (Bethesda). PubMed ID: 23893745 Krivy, K., Bradley-Gill, M. R., Moon, N. S. (2013) Capicua regulates proliferation and survival of RB-deficient cells in Drosophila. Biol Open 2: 183-190. PubMed ID: 23429853 Popova, M. K., He, W., Korenjak, M., Dyson, N. J. and Moon, N. S. (2011). Rb deficiency during Drosophila eye development deregulates EMC, causing defects in the development of photoreceptors and cone cells. J Cell Sci 124: 4203-4212. PubMed ID: 22193959 Nicolay, B. N., Bayarmagnai, B., Moon, N. S., Benevolenskaya, E. V. and Frolov, M. V. (2010). Combined inactivation of pRB and hippo pathways induces dedifferentiation in the Drosophila retina. PLoS Genet 6: e1000918. PubMed ID: 20421993 Klebanow, L. R., Peshel, E. C., Schuster, A. T., De, K., Sarvepalli, K., Lemieux, M. E., Lenoir, J. J., Moore, A. W., McDonald, J. A. and Longworth, M. S. (2016). Drosophila Condensin II subunit, Chromosome Associated Protein-D3, regulates cell fate determination through non-cell autonomous signaling. Development. PubMed ID: 27317808 Yalgin, C., Ebrahimi, S., Delandre, C., Yoong, L. F., Akimoto, S., Tran, H., Amikura, R., Spokony, R., Torben-Nielsen, B., White, K. P. and Moore, A. W. (2015). Centrosomin represses dendrite branching by orienting microtubule nucleation. Nat Neurosci. PubMed ID: 26322925 Taniguchi, H. and Moore, A. W. (2014). Chromatin regulators in neurodevelopment and disease: Analysis of fly neural circuits provides insights: Networks of chromatin regulators and transcription factors underlie Drosophila neurogenesis and cognitive defects in intellectual disability and neuropsychiatric disorder models. Bioessays. PubMed ID: 25067789 Nagel, J., Delandre, C., Zhang, Y., Forstner, F., Moore, A. W. and Tavosanis, G. (2012). Fascin controls neuronal class-specific dendrite arbor morphology. Development 139: 2999-3009. PubMed ID: 22764047 Hohenauer, T. and Moore, A. W. (2012). The Prdm family: expanding roles in stem cells and development. Development 139: 2267-2282. PubMed ID: 22669819 Endo, K., Karim, M. R., Taniguchi, H., Krejci, A., Kinameri, E., Siebert, M., Ito, K., Bray, S. J. and Moore, A. W. (2012). Chromatin modification of Notch targets in olfactory receptor neuron diversification. Nat Neurosci 15: 224-233. PubMed ID: 22197833 Medina, I., Calleja, M. and Morata, G. (2021). Tumorigenesis and cell competition in Drosophila in the absence of polyhomeotic function. Proc Natl Acad Sci U S A 118(45). PubMed ID: 34702735 Lawrence, P. A., Casal, J., Celis, J. F. and Morata, G. (2019). A refutation to 'A new A-P compartment boundary and organizer in holometabolous insect wings'. Sci Rep 9(1): 7049. PubMed ID: 31065001 Martin, R., Pinal, N. and Morata, G. (2017). Distinct regenerative potential of trunk and appendages of Drosophila mediated by JNK signalling. Development. PubMed ID: 28935711 Montes, A. J. and Morata, G. (2017). Homeostatic response to blocking cell division in Drosophila imaginal discs: Role of the Fat/Dachsous (Ft/Ds) pathway. Dev Biol 424(2):113-123. PubMed ID: 28300568 Calleja, M., Morata, G. and Casanova, J. (2016). The tumorigenic properties of Drosophila epithelial cells mutant for lethal giant larvae. Dev Dyn [Epub ahead of print]. PubMed ID: 27239786 Herrera, S. C. and Morata, G. (2014). Transgressions of compartment boundaries and cell reprogramming during regeneration in Drosophila. Elife 3: e01831. PubMed ID: 24755288 Morata, G. and Herrera, S. C. (2010). Differential division rates and size control in the wing disc. Fly (Austin) 4: 226-229. PubMed ID: 20224294 Ballesteros-Arias, L., Saavedra, V. and Morata, G. (2013). Cell competition may function either as tumour-suppressing or as tumour-stimulating factor in Drosophila. Oncogene. PubMed ID: 24096487 Shlevkov, E. and Morata, G. (2012). A dp53/JNK-dependant feedback amplification loop is essential for the apoptotic response to stress in Drosophila. Cell Death Differ 19: 451-460. PubMed ID: 21886179 Morata, G., Shlevkov, E. and Perez-Garijo, A. (2011). Mitogenic signaling from apoptotic cells in Drosophila. Dev Growth Differ 53: 168-176. PubMed ID: 21338343 Gleason, J. M., Roy, P. R., Everman, E. R., Gleason, T. C. and Morgan, T. J. (2019). Phenology of Drosophila species across a temperate growing season and implications for behavior. PLoS One 14(5): e0216601. PubMed ID: 31095588 Everman, E. R., Delzeit, J. L., Hunter, F. K., Gleason, J. M. and Morgan, T. J. (2018). Costs of cold acclimation on survival and reproductive behavior in Drosophila melanogaster. PLoS One 13(5): e0197822. PubMed ID: 29791517 Noh, S., Everman, E. R., Berger, C. M. and Morgan, T. J. (2017). Seasonal variation in basal and plastic cold tolerance: Adaptation is influenced by both long- and short-term phenotypic plasticity. Ecol Evol 7(14): 5248-5257. PubMed ID: 28770063 Gerken, A. R., Eller, O. C., Hahn, D. A. and Morgan, T. J. (2015). Constraints, independence, and evolution of thermal plasticity: Probing genetic architecture of long- and short-term thermal acclimation. Proc Natl Acad Sci U S A 112: 4399-4404. PubMed ID: 25805817 Williams, C. M., Watanabe, M., Guarracino, M. R., Ferraro, M. B., Edison, A. S., Morgan, T. J., Boroujerdi, A. F. and Hahn, D. A. (2014). Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster. Evolution 68: 3505-3523. PubMed ID: 25308124 Fallis, L. C., Fanara, J. J. and Morgan, T. J. (2011). Genetic variation in heat-stress tolerance among South American Drosophila populations. Genetica 139: 1331-1337. PubMed ID: 22350564 Matsumoto, Y., Shimizu, K., Arahata, K., Suzuki, M., Shimizu, A., Takei, K., Yamauchi, J., Hakeda-Suzuki, S., Suzuki, T. and Morimoto, T. (2018). Prepulse inhibition in Drosophila melanogaster larvae. Biol Open 7(9). PubMed ID: 30262549 Koseki, N., Mori, S., Suzuki, S., Tonooka, Y., Kosugi, S., Miyakawa, H. and Morimoto, T. (2016). Individual differences in sensory responses influence decision making by Drosophila melanogaster larvae on exposure to contradictory cues. J Neurogenet: 1-39. PubMed ID: 27309770 Suzuki, Y., Ikeda, H., Miyamoto, T., Miyakawa, H., Seki, Y., Aonishi, T. and Morimoto, T. (2015). Noise-robust recognition of wide-field motion direction and the underlying neural mechanisms in Drosophila melanogaster. Sci Rep 5: 10253. PubMed ID: 25974721 Homma, M., Nagashima, S., Fukuda, T., Yanagi, S., Miyakawa, H., Suzuki, E. and Morimoto, T. (2014). Downregulation of Centaurin gamma1A increases synaptic transmission at Drosophila larval neuromuscular junctions. Eur J Neurosci. PubMed ID: 25074496 Kikuchi, A., Ohashi, S., Fuse, N., Ohta, T., Suzuki, M., Suzuki, Y., Fujita, T., Miyamoto, T., Aonishi, T., Miyakawa, H. and Morimoto, T. (2013). Experience-dependent Plasticity of the Optomotor Response in Drosophila melanogaster. Dev Neurosci. PubMed ID: 23406844 Fukui, A., Inaki, M., Tonoe, G., Hamatani, H., Homma, M., Morimoto, T., Aburatani, H. and Nose, A. (2012). Lola regulates glutamate receptor expression at the Drosophila neuromuscular junction. Biol Open 1: 362-375. PubMed ID: 23213426 Miyashita, T., Oda, Y., Horiuchi, J., Yin, J. C., Morimoto, T. and Saitoe, M. (2012). Mg(2+) block of Drosophila NMDA receptors is required for long-term memory formation and CREB-dependent gene expression. Neuron 74: 887-898. PubMed ID: 22681692 Abbott, J. K., Innocenti, P., Chippindale, A. K. and Morrow, E. H. (2013). Epigenetics and Sex-Specific Fitness: An Experimental Test Using Male-Limited Evolution in Drosophila melanogaster. PLoS One 8: e70493. PubMed ID: 23922998 Bailey, R. I., Innocenti, P., Morrow, E. H., Friberg, U. and Qvarnstrom, A. (2011). Female Drosophila melanogaster gene expression and mate choice: the X chromosome harbours candidate genes underlying sexual isolation. PLoS One 6: e17358. PubMed ID: 21386982 Innocenti, P. and Morrow, E. H. (2010). The sexually antagonistic genes of Drosophila melanogaster. PLoS Biol 8: e1000335. PubMed ID: 20305719 Trainor, J. E., Kr, P. and Mortimer, N. T. (2021). Immune Cell Production Is Targeted by Parasitoid Wasp Virulence in a Drosophila-Parasitoid Wasp Interaction. Pathogens 10(1). PubMed ID: 33429864 Ryan, S. M., Wildman, K., Oceguera-Perez, B., Barbee, S., Mortimer, N. T. and Vrailas-Mortimer, A. D. (2020). Evolutionarily conserved transcription factors drive the oxidative stress response in Drosophila. J Exp Biol 223(Pt 14). PubMed ID: 32532866 Schachtner, L. T., Sola, I. E., Forand, D., Antonacci, S., Postovit, A. J., Mortimer, N. T., Killian, D. J. and Olesnicky, E. C. (2015). Drosophila Shep and C. elegans SUP-26 are RNA-binding proteins that play diverse roles in nervous system development. Dev Genes Evol 225(6): 319-330. PubMed ID: 26271810 Lembke, K. M., Scudder, C. and Morton, D. B. (2017). Restoration of motor defects caused by loss of Drosophila TDP-43 by expression of the voltage-gated calcium channel, Cacophony, in central neurons. J Neurosci 37(39): 9486-9497. PubMed ID: 28847811 Chang, J. C. and Morton, D. B. (2017). Drosophila lines with mutant and wild type human TDP-43 replacing the endogenous gene reveals phosphorylation and ubiquitination in mutant lines in the absence of viability or lifespan defects. PLoS One 12(7): e0180828. PubMed ID: 28686708 Chang, J. C., Hazelett, D. J., Stewart, J. A. and Morton, D. B. (2013). Motor neuron expression of the voltage-gated calcium channel cacophony restores locomotion defects in a Drosophila, TDP-43 loss of function model of ALS. Brain Res. PubMed ID: 24275199 Hazelett, D. J., Chang, J. C., Lakeland, D. L. and Morton, D. B. (2012). Comparison of parallel high-throughput RNA sequencing between knockout of TDP-43 and its overexpression reveals primarily nonreciprocal and nonoverlapping gene expression changes in the central nervous system of Drosophila. G3 (Bethesda) 2: 789-802. PubMed ID: 22870402 Vermehren-Schmaedick, A., Scudder, C., Timmermans, W. and Morton, D. B. (2011). Drosophila gustatory preference behaviors require the atypical soluble guanylyl cyclases. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 197: 717-727. PubMed ID: 21350862 Morton, D. B. (2011). Behavioral responses to hypoxia and hyperoxia in Drosophila larvae: molecular and neuronal sensors. Fly (Austin) 5: 119-125. PubMed ID: 21150317 DePew, A. T., Aimino, M. A. and Mosca, T. J. (2019). The Tenets of Teneurin: Conserved Mechanisms Regulate Diverse Developmental Processes in the Drosophila Nervous System. Front Neurosci 13: 27. PubMed ID: 30760977 Mosca, T. J., Luginbuhl, D. J., Wang, I. E. and Luo, L. (2017). Presynaptic LRP4 promotes synapse number and function of excitatory CNS neurons. Elife 6. PubMed ID: 28606304 Sakuma, C., Saito, Y., Umehara, T., Kamimura, K., Maeda, N., Mosca, T. J., Miura, M. and Chihara, T. (2016). The Strip-Hippo Pathway Regulates Synaptic Terminal Formation by Modulating Actin Organization at the Drosophila Neuromuscular Synapses. Cell Rep 16(9): 2289-2297. PubMed ID: 27545887 Proshkina, E., Yushkova, E., Koval, L., Zemskaya, N., Shchegoleva, E., Solovev, I., Yakovleva, D., Pakshina, N., Ulyasheva, N., Shaposhnikov, M. and Moskalev, A. (2021). Tissue-Specific Knockdown of Genes of the Argonaute Family Modulates Lifespan and Radioresistance in Drosophila Melanogaster. Int J Mol Sci 22(5). PubMed ID: 33673647 Shaposhnikov, M. V., Zemskaya, N. V., Koval, L., Minnikhanova, N. R., Kechko, O. I., Mitkevich, V. A., Makarov, A. A. and Moskalev, A. (2020). Amyloid-beta peptides slightly affect lifespan or antimicrobial peptide gene expression in Drosophila melanogaster. BMC Genet 21(Suppl 1): 65. PubMed ID: 33092519 Koval, L., Proshkina, E., Shaposhnikov, M. and Moskalev, A. (2019). The role of DNA repair genes in radiation-induced adaptive response in Drosophila melanogaster is differential and conditional. Biogerontology. PubMed ID: 31624983 Solovev, I., Shegoleva, E., Fedintsev, A., Shaposhnikov, M. and Moskalev, A. (2019). Circadian clock genes' overexpression in Drosophila alters diet impact on lifespan. Biogerontology 20(2): 159-170. PubMed ID: 30470951 Solovev, I., Dobrovolskaya, E., Shaposhnikov, M., Sheptyakov, M. and Moskalev, A. (2019). Neuron-specific overexpression of core clock genes improves stress-resistance and extends lifespan of Drosophila melanogaster. Exp Gerontol 117: 61-71. PubMed ID: 30415070 Solovev, I., Shegoleva, E., Fedintsev, A., Shaposhnikov, M. and Moskalev, A. (2018). Circadian clock genes' overexpression in Drosophila alters diet impact on lifespan. Biogerontology. PubMed ID: 30470951 Shaposhnikov, M., Proshkina, E., Shilova, L., Zhavoronkov, A. and Moskalev, A. (2015). Lifespan and stress resistance in Drosophila with overexpressed DNA repair genes. Sci Rep 5: 15299. PubMed ID: 26477511 Zhikrevetskaya, S., Peregudova, D., Danilov, A., Plyusnina, E., Krasnov, G., Dmitriev, A., Kudryavtseva, A., Shaposhnikov, M. and Moskalev, A. (2015). Effect of Low Doses (5-40 cGy) of Gamma-irradiation on Lifespan and Stress-related Genes Expression Profile in Drosophila melanogaster. PLoS One 10: e0133840. PubMed ID: 26248317 Omelyanchuk, L. V., Shaposhnikov, M. V. and Moskalev, A. A. (2015). Drosophila nervous system as a target of aging and anti-aging interventions. Front Genet 6: 89. PubMed ID: 25806047 Lerch, S., Zuber, R., Gehring, N., Wang, Y., Eckel, B., Klass, K. D., Lehmann, F. O. and Moussian, B. (2020). Resilin matrix distribution, variability and function in Drosophila. BMC Biol 18(1): 195. PubMed ID: 33317537 Wang, Y., Farine, J. P., Yang, Y., Yang, J., Tang, W., Gehring, N., Ferveur, J. F. and Moussian, B. (2020). Transcriptional Control of Quality Differences in the Lipid-Based Cuticle Barrier in Drosophila suzukii and Drosophila melanogaster. Front Genet 11: 887. PubMed ID: 32849846 Dong, W., Gao, Y. H., Zhang, X. B., Moussian, B. and Zhang, J. Z. (2020). Chitinase10 controls chitin amounts and organization in the wing cuticle of Drosophila. Insect Sci. PubMed ID: 32129536 Wang, Y., Norum, M., Oehl, K., Yang, Y., Zuber, R., Yang, J., Farine, J. P., Gehring, N., Flotenmeyer, M., Ferveur, J. F. and Moussian, B. (2020). Dysfunction of Oskyddad causes Harlequin-type ichthyosis-like defects in Drosophila melanogaster. PLoS Genet 16(1): e1008363. PubMed ID: 31929524 Dong, W., Dobler, R., Dowling, D. K. and Moussian, B. (2019). The cuticle inward barrier in Drosophila melanogaster is shaped by mitochondrial and nuclear genotypes and a sex-specific effect of diet. PeerJ 7: e7802. PubMed ID: 31592352 Zhang, M., Ji, Y., Zhang, X., Ma, P., Wang, Y., Moussian, B. and Zhang, J. (2019). The putative chitin deacetylases serpentine and vermiform have non-redundant functions during Drosophila wing development. Insect Biochem Mol Biol. PubMed ID: 31108167 Wang, Y., Maier, A., Gehring, N. and Moussian, B. (2019). Inhibition of fatty acid desaturation impairs cuticle differentiation in Drosophila melanogaster. Arch Insect Biochem Physiol: e21535. PubMed ID: 30672604 Wang, Y., Berger, J. and Moussian, B. (2018). Trynity models a tube valve in the Drosophila larval airway system. Dev Biol [Epub ahead of print]. PubMed ID: 29518377 Zuber, R., Norum, M., Wang, Y., Oehl, K., Gehring, N., Accardi, D., Bartozsewski, S., Berger, J., Flotenmeyer, M. and Moussian, B. (2017). The ABC transporter Snu and the extracellular protein Snsl cooperate in the formation of the lipid-based inward and outward barrier in the skin of Drosophila. Eur J Cell Biol. PubMed ID: 29306642 Quraishe, S., Cowan, C. M., Mudher, A. (2013) NAP (davunetide) rescues neuronal dysfunction in a Drosophila model of tauopathy. Mol Psychiatry. PubMed ID: 23587881 Cowan, C. M., Quraishe, S. and Mudher, A. (2012). What is the pathological significance of tau oligomers? Biochem Soc Trans 40: 693-697. PubMed ID: 22817718 Cowan, C. M., Sealey, M. A., Quraishe, S., Targett, M. T., Marcellus, K., Allan, D. and Mudher, A. (2011). Modelling tauopathies in Drosophila: insights from the fruit fly. Int J Alzheimers Dis 2011: 598157. PubMed ID: 22254145 Sinadinos, C., Cowan, C. M., Wyttenbach, A. and Mudher, A. (2012). Increased throughput assays of locomotor dysfunction in Drosophila larvae. J Neurosci Methods 203: 325-334. PubMed ID: 21925540 Sharma, V., Mutsuddi, M. and Mukherjee, A. (2020). Deltex cooperates with TRAF6 to promote apoptosis and cell migration through Eiger-independent JNK activation in Drosophila. Cell Biol Int. PubMed ID: 33300258 Singh, A., Paul, M. S., Dutta, D., Mutsuddi, M. and Mukherjee, A. (2019). Regulation of Notch signaling by a chromatin modeling protein Hat-trick. Development. PubMed ID: 31142544 Dutta, D., Mutsuddi, M. and Mukherjee, A. (2019). Synergistic interaction of Deltex and Hrp48 leads to JNK activation. Cell Biol Int 43(3): 350-357. PubMed ID: 30597717 Dutta, D., Mutsuddi, M. and Mukherjee, A. (2018). Synergistic interaction of Deltex and Hrp48 leads to JNK activation. Cell Biol Int. PubMed ID: 30597717 Paul, M. S., Dutta, D., Singh, A., Mutsuddi, M. and Mukherjee, A. (2018). Regulation of Notch signaling in the developing Drosophila eye by a T-box containing transcription factor, Dorsocross. Genesis. PubMed ID: 30246928 Dutta, D., Singh, A., Paul, M. S., Sharma, V., Mutsuddi, M. and Mukherjee, A. (2018). Deltex interacts with Eiger and consequently influences the cell death in Drosophila melanogaster. Cell Signal 49: 17-29. PubMed ID: 29775737 Paul, M. S., Singh, A., Dutta, D., Mutsuddi, M. and Mukherjee, A. (2018). Notch signals modulate lgl mediated tumorigenesis by the activation of JNK signaling. BMC Res Notes 11(1): 247. PubMed ID: 29661224 Singh, A., Dutta, D., Paul, M. S., Verma, D., Mutsuddi, M. and Mukherjee, A. (2018). Pleiotropic functions of the chromodomain-containing protein Hat-trick during oogenesis in Drosophila melanogaster. G3 (Bethesda) [Epub ahead of print]. PubMed ID: 29367451 Tripathi, B. K., Das, R., Mukherjee, A. and Mutsuddi, M. (2017). Interaction of Spoonbill with Prospero in Drosophila: Implications in neuroblast development. Genesis. PubMed ID: 28722203 Dutta, D., Paul, M. S., Singh, A., Mutsuddi, M. and Mukherjee, A. (2017). Regulation of Notch signaling by the Heterogeneous Nuclear Ribonucleoprotein Hrp48 and Deltex in Drosophila melanogaster. Genetics. PubMed ID: 28396507 Hain, D., Langlands, A., Sonnenberg, H. C., Bailey, C., Bullock, S. L. and Muller, H. A. (2014). The Drosophila MAST kinase Drop out is required to initiate membrane compartmentalisation during cellularisation and regulates dynein-based transport. Development 141: 2119-2130. PubMed ID: 24803657 Muha, V., Muller, H. A. (2013) Functions and Mechanisms of Fibroblast Growth Factor (FGF) Signalling in Drosophila melanogaster. Int J Mol Sci 14: 5920-5937. PubMed ID: 23493057 Mariappa, D., Sauert, K., Marino, K., Turnock, D., Webster, R., van Aalten, D. M., Ferguson, M. A. and Muller, H. A. (2011). Protein O-GlcNAcylation is required for fibroblast growth factor signaling in Drosophila. Sci Signal 4: ra89. PubMed ID: 22375049 Winklbauer, R. and Muller, H. A. (2011). Mesoderm layer formation in Xenopus and Drosophila gastrulation. Phys Biol 8: 045001. PubMed ID: 21750361 Finogenova, K., Bonnet, J., Poepsel, S., Schäfer, I. B., Finkl, K., Schmid, K., Litz, C., Strauss, M., Benda, C. and Muller, J. (2020). Structural basis for PRC2 decoding of active histone methylation marks H3K36me2/3. Elife 9. PubMed ID: 33211010 Bonnet, J., Lindeboom, R. G. H., Pokrovsky, D., Stricker, G., Celik, M. H., Rupp, R. A. W., Gagneur, J., Vermeulen, M., Imhof, A. and Muller, J. (2019). Quantification of proteins and histone marks in Drosophila embryos reveals stoichiometric relationships impacting chromatin regulation. Dev Cell. PubMed ID: 31630981 De, I., Chittock, E. C., Grotsch, H., Miller, T. C. R., McCarthy, A. A. and Muller, C. W. (2018). Structural basis for the activation of the deubiquitinase Calypso by the Polycomb protein ASX. Structure. PubMed ID: 30639226 Copur, O., Gorchakov, A., Finkl, K., Kuroda, M. I. and Muller, J. (2018). Sex-specific phenotypes of histone H4 point mutants establish dosage compensation as the critical function of H4K16 acetylation in Drosophila. Proc Natl Acad Sci U S A. PubMed ID: 30530664 Schmahling, S., Meiler, A., Lee, Y., Mohammed, A., Finkl, K., Tauscher, K., Israel, L., Borath, M., Philippou-Massier, J., Blum, H., Habermann, B., Imhof, A., Song, J. J. and Muller, J. (2018). Regulation and function of H3K36 di-methylation by the trithorax-group protein complex AMC. Development. PubMed ID: 29540501 Copur, O. and Muller, J. (2018). Histone demethylase activity of Utx is essential for viability and regulation of HOX gene expression in Drosophila. Genetics 208(2): 633-637. PubMed ID: 29247011 Laprell, F., Finkl, K. and Muller, J. (2017). Propagation of Polycomb-repressed chromatin requires sequence-specific recruitment to DNA. Science [Epub ahead of print]. PubMed ID: 28302792 Frey, F., Sheahan, T., Finkl, K., Stoehr, G., Mann, M., Benda, C. and Muller, J. (2016). Molecular basis of PRC1 targeting to Polycomb response elements by PhoRC. Genes Dev 30: 1116-1127. PubMed ID: 27151979 Pengelly, A. R., Kalb, R., Finkl, K. and Muller, J. (2015). Transcriptional repression by PRC1 in the absence of H2A monoubiquitylation. Genes Dev 29: 1487-1492. PubMed ID: 26178786 Golenkina, S., Chaturvedi, V., Saint, R. and Murray, M. J. (2018). Frazzled can act through distinct molecular pathways in epithelial cells to regulate motility, apical constriction, and localisation of E-Cadherin. PLoS One 13(3): e0194003. PubMed ID: 29518139 Pert, M., Gan, M., Saint, R. and Murray, M.J. (2015). Netrins and Frazzled/DCC promote the migration and mesenchymal to epithelial transition of Drosophila midgut cells. Biol Open [Epub ahead of print]. PubMed ID: 25617422 Manhire-Heath, R., Golenkina, S., Saint, R. and Murray, M. J. (2013). Netrin-dependent downregulation of Frazzled/DCC is required for the dissociation of the peripodial epithelium in Drosophila. Nat Commun 4: 2790. PubMed ID: 24225841 Murray, M. J., Ng, M. M., Fraval, H., Tan, J., Liu, W., Smallhorn, M., Brill, J. A., Field, S. J. and Saint, R. (2012). Regulation of Drosophila mesoderm migration by phosphoinositides and the PH domain of the Rho GTP exchange factor Pebble. Dev Biol 372: 17-27. PubMed ID: 23000359 Murray, M. J., Southall, T. D., Liu, W., Fraval, H., Lorensuhewa, N., Brand, A. H. and Saint, R. (2012). Snail-dependent repression of the RhoGEF pebble is required for gastrulation consistency in Drosophila melanogaster. Dev Genes Evol 222: 361-368. PubMed ID: 22945369 Murray, M. J. and Saint, R. (2011). Imaging pluripotent cell migration in Drosophila. Methods Mol Biol 750: 169-184. PubMed ID: 21618091 Deutsch, D., Pacheco, D., Encarnacion-Rivera, L., Pereira, T., Fathy, R., Clemens, J., Girardin, C., Calhoun, A., Ireland, E., Burke, A., Dorkenwald, S., McKellar, C., Macrina, T., Lu, R., Lee, K., Kemnitz, N., Ih, D., Castro, M., Halageri, A., Jordan, C., Silversmith, W., Wu, J., Seung, H. S. and Murthy, M. (2020). The neural basis for a persistent internal state in Drosophila females. Elife 9. PubMed ID: 33225998 Calhoun, A. J., Pillow, J. W. and Murthy, M. (2019). Unsupervised identification of the internal states that shape natural behavior. Nat Neurosci 22(12): 2040-2049. PubMed ID: 31768056 Deutsch, D., Clemens, J., Thiberge, S. Y., Guan, G. and Murthy, M. (2019). Shared song detector neurons in Drosophila male and female brains drive sex-specific behaviors. Curr Biol 29(19): 3200-3215.e3205. PubMed ID: 31564492 Clemens, J., Coen, P., Roemschied, F. A., Pereira, T. D., Mazumder, D., Aldarondo, D. E., Pacheco, D. A. and Murthy, M. (2018). Discovery of a new song mode in Drosophila reveals hidden structure in the sensory and neural drivers of behavior. Curr Biol 28(15): 2400-2412.e2406. PubMed ID: 30057309 Clemens, J., Ozeri-Engelhard, N. and Murthy, M. (2018). Fast intensity adaptation enhances the encoding of sound in Drosophila. Nat Commun 9(1): 134. PubMed ID: 29317624 Stern, D. L., Clemens, J., Coen, P., Calhoun, A. J., Hogenesch, J. B., Arthur, B. J. and Murthy, M. (2017). Experimental and statistical reevaluation provides no evidence for Drosophila courtship song rhythms. Proc Natl Acad Sci U S A 114(37): 9978-9983. PubMed ID: 28851830 Crocker, A., Guan, X.J., Murphy, C.T. and Murthy, M. (2016). Cell-type-specific transcriptome analysis in the Drosophila mushroom body reveals memory-related changes in gene expression. Cell Rep [Epub ahead of print]. PubMed ID: 27160913 Coen, P., Xie, M., Clemens, J. and Murthy, M. (2016). Sensorimotor transformations underlying variability in song intensity during Drosophila courtship. Neuron 89: 629-644. PubMed ID: 26844835 Coen, P., Xie, M., Clemens, J. and Murthy, M. (2016). Sensorimotor transformations underlying variability in song intensity during Drosophila courtship. Neuron 89: 629-644. PubMed ID: 26844835 Daskalaki, A., Shalaby, N. A., Kux, K., Tsoumpekos, G., Tsibidis, G. D., Muskavitch, M. A. and Delidakis, C. (2011). Distinct intracellular motifs of Delta mediate its ubiquitylation and activation by Mindbomb1 and Neuralized. J Cell Biol 195: 1017-1031. PubMed ID: 22162135 Kang, K., Panzano, V. C., Chang, E. C., Ni, L., Dainis, A. M., Jenkins, A. M., Regna, K., Muskavitch, M. A. and Garrity, P. A. (2012). Modulation of TRPA1 thermal sensitivity enables sensory discrimination in Drosophila. Nature 481: 76-80. PubMed ID: 22139422 Tripathi, B. K., Surabhi, S., Bhaskar, P. K., Mukherjee, A. and Mutsuddi, M. (2016). The RNA binding KH domain of Spoonbill depletes pathogenic non-coding spinocerebellar ataxia 8 transcripts and suppresses neurodegeneration in Drosophila. Biochim Biophys Acta 1862: 1732-1741. PubMed ID: 27302466 Surabhi, S., Tripathi, B. K., Maurya, B., Bhaskar, P. K., Mukherjee, A. and Mutsuddi, M. (2015). Regulation of Notch Signalling by an Evolutionary Conserved DEAD Box RNA Helicase, Maheshvara in Drosophila melanogaster. Genetics. PubMed ID: 26400611 Sachan, N., Mishra, A. K., Mutsuddi, M. and Mukherjee, A. (2015). Chip physically interacts with Notch and their stoichiometry is critical for Notch function in wing development and cell proliferation in Drosophila. Biochim Biophys Acta 1850: 802-812. PubMed ID: 25597954 Mishra, A. K., Sachan, N., Mutsuddi, M. and Mukherjee, A. (2014). TRAF6 is a novel regulator of Notch signaling in Drosophila melanogaster. Cell Signal 26: 3016-3026. PubMed ID: 25280943 Pirraglia, C., Walters, J., Ahn, N., Myat, M. M. (2013) Rac1 GTPase acts downstream of alphaPS1betaPS integrin to control collective migration and lumen size in the Drosophila salivary gland. Dev Biol. PubMed ID: 23500171 Patel, U., Davies, S. A. and Myat, M. M. (2012). Receptor-type guanylyl cyclase Gyc76C is required for development of the Drosophila embryonic somatic muscle. Biol Open 1: 507-515. PubMed ID: 23213443 Xu, N., Bagumian, G., Galiano, M. and Myat, M. M. (2011). Rho GTPase controls Drosophila salivary gland lumen size through regulation of the actin cytoskeleton and Moesin. Development 138: 5415-5427. PubMed ID: 22071107 Zhan, Y., Maung, S. W., Shao, B. and Myat, M. M. (2010). The bHLH transcription factor, hairy, refines the terminal cell fate in the Drosophila embryonic trachea. PLoS One 5: e14134. PubMed ID: 21152432 |