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Pamudurti, N. R., Patop, I. L., Krishnamoorthy, A., Bartok, O., Maya, R., Lerner, N., Ashwall-Fluss, R., Konakondla, J. V. V., Beatus, T. and Kadener, S. (2022). circMbl functions in cis and in trans to regulate gene expression and physiology in a tissue-specific fashion. Cell Rep 39(4): 110740. PubMed ID: 35476987 Martin Anduaga, A., Evantal, N., Patop, I. L., Bartok, O., Weiss, R. and Kadener, S. (2019). Thermosensitive alternative splicing senses and mediates temperature adaptation in Drosophila. Elife 8. PubMed ID: 31702556 Buchumenski, I., Bartok, O., Ashwal-Fluss, R., Pandey, V., Porath, H. T., Levanon, E. Y. and Kadener, S. (2017). Dynamic hyper-editing underlies temperature adaptation in Drosophila. PLoS Genet 13(7): e1006931. PubMed ID: 28746393 Afik, S., Bartok, O., Artyomov, M. N., Shishkin, A. A., Kadri, S., Hanan, M., Zhu, X., Garber, M. and Kadener, S. (2017). Defining the 5 and 3 landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq. Nucleic Acids Res [Epub ahead of print]. PubMed ID: 28335028 Lerner, I., Bartok, O., Wolfson, V., Menet, J. S., Weissbein, U., Afik, S., Haimovich, D., Gafni, C., Friedman, N., Rosbash, M. and Kadener, S. (2015). Clk post-transcriptional control denoises circadian transcription both temporally and spatially. Nat Commun 6: 7056. PubMed ID: 25952406 Ashwal-Fluss, R., Meyer, M., Pamudurti, N. R., Ivanov, A., Bartok, O., Hanan, M., Evantal, N., Memczak, S., Rajewsky, N. and Kadener, S. (2014). circRNA biogenesis competes with pre-mRNA splicing. Mol Cell 56: 55-66. PubMed ID: 25242144 Weiss, R., Bartok, O., Mezan, S., Malka, Y. and Kadener, S. (2014). Synergistic Interactions between the Molecular and Neuronal Circadian Networks Drive Robust Behavioral Circadian Rhythms in Drosophila melanogaster. PLoS Genet 10: e1004252. PubMed ID: 24698952 Mezan, S., Ashwal-Fluss, R., Shenhav, R., Garber, M. and Kadener, S. (2013). Genome-wide assessment of post-transcriptional control in the fly brain. Front Mol Neurosci 6: 49. PubMed ID: 24367289 Belacortu, Y., Weiss, R., Kadener, S. and Paricio, N. (2012). Transcriptional activity and nuclear localization of Cabut, the Drosophila ortholog of vertebrate TGF-beta-inducible early-response gene (TIEG) proteins. PLoS One 7: e32004. PubMed ID: 22359651 Shir-Shapira, H., Sloutskin, A., Adato, O., Ovadia-Shochat, A., Ideses, D., Zehavi, Y., Kassavetis, G., Kadonaga, J. T., Unger, R. and Juven-Gershon, T. (2019). Identification of evolutionarily conserved downstream core promoter elements required for the transcriptional regulation of Fushi tarazu target genes. PLoS One 14(4): e0215695. PubMed ID: 30998799 Khuong, M. T., Fei, J., Cruz-Becerra, G. and Kadonaga, J. T. (2017). A simple and versatile system for the ATP-dependent assembly of chromatin. J Biol Chem 292(47): 19478-19490. PubMed ID: 28982979 Wang, Y. L., Duttke, S. H., Chen, K., Johnston, J., Kassavetis, G. A., Zeitlinger, J. and Kadonaga, J. T. (2014). TRF2, but not TBP, mediates the transcription of ribosomal protein genes. Genes Dev. PubMed ID: 24958592 Kassavetis, G. A. and Kadonaga, J. T. (2014). The Annealing Helicase and Branch Migration Activities of Drosophila HARP. PLoS One 9: e98173. PubMed ID: 24866343 Torigoe, S. E., Patel, A., Khuong, M. T., Bowman, G. D. and Kadonaga, J. T. (2013). ATP-dependent chromatin assembly is functionally distinct from chromatin remodeling. Elife 2: e00863. PubMed ID: 23986862 Kadonaga, J. T. (2012). Perspectives on the RNA polymerase II core promoter. Wiley Interdiscip Rev Dev Biol 1: 40-51. PubMed ID: 23801666 Stephan, D., Sanchez-Soriano, N., Loschek, L.F., Gerhards, R., Gutmann, S., Storchova, Z., Prokop, A., and Kadow, I.C. (2012). Drosophila Psidin Regulates Olfactory Neuron Number and Axon Targeting through Two Distinct Molecular Mechanisms. J. Neurosci. 32: 16080-16094. PubMed ID: 23152593 Hartl, M., et al. (2011). A new Prospero and microRNA-279 pathway restricts CO2 receptor neuron formation. J. Neurosci. 31(44): 15660-73. PubMed ID: 22049409 Salminen, T.S., Oliveira, M.T., Cannino, G., Lillsunde, P., Jacobs, H.T. and Kaguni, L.S. (2017). Mitochondrial genotype modulates mtDNA copy number and organismal phenotype in Drosophila. Mitochondrion [Epub ahead of print]. PubMed ID: 28214560 Stiban, J., Farnum, G. A., Hovde, S. L. and Kaguni, L. S. (2014). The N-terminal domain of the Drosophila mitochondrial replicative DNA helicase contains an iron-sulfur cluster and binds DNA. J Biol Chem. PubMed ID: 25023283 Fernandez-Moreno, M. A., Hernandez, R., Adan, C., Roberti, M., Bruni, F., Polosa, P. L., Cantatore, P., Matsushima, Y., Kaguni, L. S. and Garesse, R. (2013). Drosophila nuclear factor DREF regulates the expression of the mitochondrial DNA helicase and mitochondrial transcription factor B2 but not the mitochondrial translation factor B1. Biochim Biophys Acta 1829: 1136-1146. PubMed ID: 23916463 Martinez-Azorin, F., Calleja, M., Hernandez-Sierra, R., Farr, C. L., Kaguni, L. S. and Garesse, R. (2013). Muscle-specific overexpression of the catalytic subunit of DNA polymerase gamma induces pupal lethality in Drosophila melanogaster. Arch Insect Biochem Physiol 83: 127-137. PubMed ID: 23729397 Kawaguchi, S., Ueki, M. and Kai, T. (2020). Drosophila MARF1 ensures proper oocyte maturation by regulating nanos expression. PLoS One 15(4): e0231114. PubMed ID: 32243476 Teo, R. Y. W., Anand, A., Sridhar, V., Okamura, K. and Kai, T. (2018). Heterochromatin protein 1a functions for piRNA biogenesis predominantly from pericentric and telomeric regions in Drosophila. Nat Commun 9(1): 1735. Pubmed ID: 29728561 Quénerch'du, E., Anand, A. and Kai, T. (2016). The piRNA pathway is developmentally regulated during spermatogenesis in Drosophila. RNA [Epub ahead of print]. PubMed ID: 27208314 Ghodsi, Z., Silva, E. S. and Hassani, H. (2015). Bicoid Signal Extraction with a Selection of Parametric and Nonparametric Signal Processing Techniques. Genomics Proteomics Bioinformatics. PubMed ID: 26197438 Patil, V. S., Anand, A., Chakrabarti, A. and Kai, T. (2014). The Tudor domain protein Tapas, a homolog of the vertebrate Tdrd7, functions in piRNA pathway to regulate retrotransposons in germline of Drosophila melanogaster. BMC Biol 12: 61. PubMed ID: 25287931 Pek, J. W., Ng, B. F. and Kai, T. (2012). Polo-mediated phosphorylation of Maelstrom regulates oocyte determination during oogenesis in Drosophila. Development 139: 4505-4513. PubMed ID: 23136393 Lim, R. S., Osato, M. and Kai, T. (2012). Isolation of undifferentiated female germline cells from adult Drosophila ovaries. Curr Protoc Stem Cell Biol Chapter 2: Unit2E 3. PubMed ID: 22872426 Little, J. C., Garcia-Garcia, E., Sul, A. and Kalderon, D. (2020). Drosophila hedgehog can act as a morphogen in the absence of regulated Ci processing. Elife 9. PubMed ID: 33084577 Melamed, D. and Kalderon, D. (2020). Opposing JAK-STAT and Wnt signaling gradients define a stem cell domain by regulating differentiation at two borders. Elife 9. PubMed ID: 33135631 Reilein, A., Melamed, D., Tavare, S. and Kalderon, D. (2018). Division-independent differentiation mandates proliferative competition among stem cells. Proc Natl Acad Sci U S A. PubMed ID: 29555768 Huang, J., Reilein, A. and Kalderon, D. (2017). Yorkie and Hedgehog independently restrict BMP production in Escort cells to permit germline differentiation in the Drosophila ovary. Development. PubMed ID: 28619819 Garcia Garcia, E., Little, J. C. and Kalderon, D. (2017). The exon junction complex and Srp54 contribute to Drosophila Hedgehog signaling via ci RNA Splicing. Genetics [Epub ahead of print]. PubMed ID: 28637711 Reilein, A., Melamed, D., Park, K. S., Berg, A., Cimetta, E., Tandon, N., Vunjak-Novakovic, G., Finkelstein, S. and Kalderon, D. (2017). Alternative direct stem cell derivatives defined by stem cell location and graded Wnt signalling. Nat Cell Biol 19(5):433-444. PubMed ID: 28414313 Huang, J. and Kalderon, D. (2014). Coupling of Hedgehog and Hippo pathways promotes stem cell maintenance by stimulating proliferation. J Cell Biol. PubMed ID: 24798736 Vied, C., Reilein, A., Field, N. S. and Kalderon, D. (2012). Regulation of stem cells by intersecting gradients of long-range niche signals. Dev Cell 23: 836-848. PubMed ID: 23079600 Wang, Z. A., Huang, J. and Kalderon, D. (2012). Drosophila follicle stem cells are regulated by proliferation and niche adhesion as well as mitochondria and ROS. Nat Commun 3: 769. PubMed ID: 22473013 Komarov, P. A., Sokolova, O., Akulenko, N., Brasset, E., Jensen, S. and Kalmykova, A. (2020). Epigenetic Requirements for Triggering Heterochromatinization and Piwi-Interacting RNA Production from Transgenes in the Drosophila Germline. Cells 9(4). PubMed ID: 32290057 Kordyukova, M., Sokolova, O., Morgunova, V., Ryazansky, S., Akulenko, N., Glukhov, S. and Kalmykova, A. (2019). Nuclear Ccr4-Not mediates the degradation of telomeric and transposon transcripts at chromatin in the Drosophila germline. Nucleic Acids Res. PubMed ID: 31724732 Radion, E., Sokolova, O., Ryazansky, S., Komarov, P. A., Abramov, Y. and Kalmykova, A. (2019). The integrity of piRNA clusters is abolished by insulators in the Drosophila germline. Genes (Basel) 10(3). PubMed ID: 30862119 Kordyukova, M., Morgunova, V., Olovnikov, I., Komarov, P. A., Mironova, A., Olenkina, O. M. and Kalmykova, A. (2018). Subcellular localization and Egl-mediated transport of telomeric retrotransposon HeT-A ribonucleoprotein particles in the Drosophila germline and early embryogenesis. PLoS One 13(8): e0201787. PubMed ID: 30157274 Akulenko, N., Ryazansky, S., Morgunova, V., Komarov, P. A., Olovnikov, I., Vaury, C., Jensen, S. and Kalmykova, A. (2018). Transcriptional and chromatin changes accompanying de novo formation of transgenic piRNA clusters. Rna. PubMed ID: 29358235 Ryazansky, S., Radion, E., Mironova, A., Akulenko, N., Abramov, Y., Morgunova, V., Kordyukova, M.Y., Olovnikov, I. and Kalmykova, A. (2017). Natural variation of piRNA expression affects immunity to transposable elements. PLoS Genet 13: e1006731. PubMed ID: 28448516 Radion, E., Ryazansky, S., Akulenko, N., Rozovsky, Y., Kwon, D., Morgunova, V., Olovnikov, I. and Kalmykova, A. (2016). Telomeric retrotransposon HeT-A contains a bidirectional promoter that initiates divergent transcription of piRNA precursors in Drosophila germline. J Mol Biol [Epub ahead of print]. PubMed ID: 27939293 Olovnikov, I. A., Morgunova, V. V., Mironova, A. A., Kordyukova, M. Y., Radion, E. I., Olenkina, O. M., Akulenko, N. V. and Kalmykova, A. I. (2016). Interaction of Telomeric Retroelement HeT-A Transcripts and Their Protein Product Gag in Early Embryogenesis of Drosophila. Biochemistry (Mosc) 81(9): 1023-1030. PubMed ID: 27682174 Ishikawa, Y., Fujiwara, M., Wong, J., Ura, A. and Kamikouchi, A. (2019). Stereotyped combination of hearing and wind/gravity-sensing neurons in the Johnston's organ of Drosophila. Front Physiol 10: 1552. PubMed ID: 31969834 Yamada, D., Ishimoto, H., Li, X., Kohashi, T., Ishikawa, Y. and Kamikouchi, A. (2018). GABAergic local interneurons shape female fruit fly response to mating songs. J Neurosci 38(18): 4329-4347. PubMed ID: 29691331 Li, X., Ishimoto, H. and Kamikouchi, A. (2018). Auditory experience controls the maturation of song discrimination and sexual response in Drosophila. Elife 7. PubMed ID: 29555017 :Matsuo, E., Seki, H., Asai, T., Morimoto, T., Miyakawa, H., Ito, K. and Kamikouchi, A. (2016). The organization of projection neurons and local neurons of the primary auditory center in the fruit fly Drosophila melanogaster. J Comp Neurol 24(6):1099-164. PubMed ID: 26762251 Yoon, J., Matsuo, E., Yamada, D., Mizuno, H., Morimoto, T., Miyakawa, H., Kinoshita, S., Ishimoto, H. and Kamikouchi, A. (2013). Selectivity and Plasticity in a Sound-Evoked Male-Male Interaction in. PLoS One 8: e74289. PubMed ID: 24086330 Kamikouchi, A., Wiek, R., Effertz, T., Gopfert, M. C. and Fiala, A. (2010). Transcuticular optical imaging of stimulus-evoked neural activities in the Drosophila peripheral nervous system. Nat Protoc 5: 1229-1235. PubMed ID: 20595952 Kamikouchi, A., Albert, J. T. and Gopfert, M. C. (2010). Mechanical feedback amplification in Drosophila hearing is independent of synaptic transmission. Eur J Neurosci 31: 697-703. PubMed ID: 20384813 Morgunova, V., Akulenko, N., Radion, E., Olovnikov, I., Abramov, Y., Olenina, L. V., Shpiz, S., Kopytova, D. V., Georgieva, S. G. and Kalmykova, A. (2016). Telomeric repeat silencing in germ cells is essential for early development in Drosophila. Nucleic Acids Res 44(15): 7509. PubMed ID: 27220463 Shpiz, S., Ryazansky, S., Olovnikov, I., Abramov, Y. and Kalmykova, A. (2014). Euchromatic transposon insertions trigger production of novel Pi- and endo-siRNAs at the target sites in the drosophila germline. PLoS Genet 10(2): e1004138. PubMed ID: 24516406 Du, E. J., Ahn, T. J., Wen, X., Seo, D. W., Na, D. L., Kwon, J. Y., Choi, M., Kim, H. W., Cho, H. and Kang, K. (2016). Nucleophile sensitivity of Drosophila TRPA1 underlies light-induced feeding deterrence. Elife 5. PubMed ID: 27656903 Choi, J., van Giesen, L., Choi, M. S., Kang, K., Sprecher, S. G. and Kwon, J. Y. (2016). A Pair of Pharyngeal Gustatory Receptor Neurons Regulates Caffeine-Dependent Ingestion in Drosophila Larvae. Front Cell Neurosci 10: 181. PubMed ID: 27486388 Park, J. H., Chen, J., Jang, S., Ahn, T. J., Kang, K., Choi, M. S. and Kwon, J. Y. (2016). A subset of enteroendocrine cells is activated by amino acids in the Drosophila midgut. FEBS Lett 590: 493-500. PubMed ID: 26801353 Kim, H., Choi, M. S., Kang, K. and Kwon, J. Y. (2016). Behavioral Analysis of Bitter Taste Perception in Drosophila Larvae. Chem Senses 41: 85-94. PubMed ID: 26512069 Waghmare, I. and Kango-Singh, M. (2016). Loss of cell adhesion increases tumorigenic potential of polarity deficient Scribble mutant cells. PLoS One 11: e0158081. PubMed ID: 27327956 Wittkorn, E., Sarkar, A., Garcia, K., Kango-Singh, M. and Singh, A. (2015). The Hippo pathway effector Yki downregulates Wg signaling to promote retinal differentiation in the Drosophila eye. Development 142: 2002-2013. PubMed ID: 25977365 Kwon, H. J., Waghmare, I., Verghese, S., Singh, A., Singh, A. and Kango-Singh, M. (2015). Drosophila C-terminal Src kinase regulates growth via the Hippo signaling pathway. Dev Biol 397: 67-76. PubMed ID: 25446534 Hilsabeck, T. A. U., Liu-Bryan, R., Guo, T., Wilson, K. A., Bose, N., Raftery, D., Beck, J. N., Lang, S., Jin, K., Nelson, C. S., Oron, T., Stoller, M., Promislow, D., Brem, R. B., Terkeltaub, R. and Kapahi, P. (2022). A fly GWAS for purine metabolites identifies human FAM214 homolog medusa, which acts in a conserved manner to enhance hyperuricemia-driven pathologies by modulating purine metabolism and the inflammatory response. Geroscience. PubMed ID: 35381951 Sharma, A., Akagi, K., Pattavina, B., Wilson, K. A., Nelson, C., Watson, M., Maksoud, E., Harata, A., Ortega, M., Brem, R. B. and Kapahi, P. (2020). Musashi expression in intestinal stem cells attenuates radiation-induced decline in intestinal permeability and survival in Drosophila. Sci Rep 10(1): 19080. PubMed ID: 33154387 Wilson, K. A., Beck, J. N., Nelson, C. S., Hilsabeck, T. A., Promislow, D., Brem, R. B. and Kapahi, P. (2020). GWAS for Lifespan and Decline in Climbing Ability in Flies upon Dietary Restriction Reveal decima as a Mediator of Insulin-like Peptide Production. Curr Biol. PubMed ID: 32502405 Lang, S., Hilsabeck, T. A., Wilson, K. A., Sharma, A., Bose, N., Brackman, D. J., Beck, J. N., Chen, L., Watson, M. A., Killilea, D. W., Ho, S., Kahn, A., Giacomini, K., Stoller, M. L., Chi, T. and Kapahi, P. (2019). A conserved role of the insulin-like signaling pathway in diet-dependent uric acid pathologies in Drosophila melanogaster. PLoS Genet 15(8): e1008318. PubMed ID: 31415568 Huang, K., Chen, W., Zhu, F., Li, P. W., Kapahi, P. and Bai, H. (2019). RiboTag translatomic profiling of Drosophila oenocytes under aging and induced oxidative stress. BMC Genomics 20(1): 50. PubMed ID: 30651069 Laye, M. J., Tran, V., Jones, D. P., Kapahi, P. and Promislow, D. E. (2015). The effects of age and dietary restriction on the tissue-specific metabolome of Drosophila. Aging Cell [Epub ahead of print]. PubMed ID: 26085309 Chi, T., Kim, M. S., Lang, S., Bose, N., Kahn, A., Flechner, L., Blaschko, S. D., Zee, T., Muteliefu, G., Bond, N., Kolipinski, M., Fakra, S. C., Mandel, N., Miller, J., Ramanathan, A., Killilea, D. W., Bruckner, K., Kapahi, P. and Stoller, M. L. (2015). A Drosophila model identifies a critical role for zinc in mineralization for kidney stone disease. PLoS One 10: e0124150. PubMed ID: 25970330 Miller, J., Chi, T., Kapahi, P., Kahn, A. J., Kim, M. S., Hirata, T., Romero, M. F., Dow, J. A. and Stoller, M. L. (2013). Drosophila Melanogaster as an Emerging Translational Model of Human Nephrolithiasis. J Urol. PubMed ID: 23500641 Bruce, K. D., Hoxha, S., Carvalho, G. B., Yamada, R., Wang, H. D., Karayan, P., He, S., Brummel, T., Kapahi, P. and Ja, W. W. (2013). High carbohydrate-low protein consumption maximizes Drosophila lifespan. Exp Gerontol. PubMed ID: 23403040 Katewa, S. D., Demontis, F., Kolipinski, M., Hubbard, A., Gill, M. S., Perrimon, N., Melov, S. and Kapahi, P. (2012). Intramyocellular fatty-acid metabolism plays a critical role in mediating responses to dietary restriction in Drosophila melanogaster. Cell Metab 16: 97-103. PubMed ID: 22768842 Kapopoulou, A., Kapun, M., Pieper, B., Pavlidis, P., Wilches, R., Duchen, P., Stephan, W. and Laurent, S. (2020). Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster. Sci Rep 10(1): 22415. PubMed ID: 33376238 Kapun, M. and Flatt, T. (2019). The adaptive significance of chromosomal inversion polymorphisms in Drosophila melanogaster. Mol Ecol 28(6): 1263-1282. PubMed ID: 30230076 Immarigeon, C., Frei, Y., Delbare, S. Y. N., Gligorov, D., Machado Almeida, P., Grey, J., Fabbro, L., Nagoshi, E., Billeter, J. C., Wolfner, M. F., Karch, F. and Maeda, R. K. (2021). Identification of a micropeptide and multiple secondary cell genes that modulate Drosophila male reproductive success. Proc Natl Acad Sci U S A 118(15). PubMed ID: 33876742 Prince, E., Kroeger, B., Gligorov, D., Wilson, C., Eaton, S., Karch, F., Brankatschk, M. and Maeda, R. K. (2018). Rab-mediated trafficking in the secondary cells of Drosophila male accessory glands and its role in fecundity. Traffic. PubMed ID: 30426623 Maeda, R. K., Sitnik, J. L., Frei, Y., Prince, E., Gligorov, D., Wolfner, M. F. and Karch, F. (2018). The lncRNA male-specific abdominal plays a critical role in Drosophila accessory gland development and male fertility. PLoS Genet 14(7): e1007519. PubMed ID: 30011265 Cleard, F., Wolle, D., Taverner, A. M., Aoki, T., Deshpande, G., Andolfatto, P., Karch, F. and Schedl, P. (2016). Different Evolutionary Strategies to Conserve Chromatin Boundary Function in the Bithorax Complex. Genetics. PubMed ID: 28007886 Sitnik, J.L., Gligorov, D., Maeda, R.K., Karch, F. and Wolfner, M.F. (2016). Secondary cell expressed genes in the male accessory gland are needed for the Drosophila melanogaster. Genetics [Epub ahead of print]. PubMed ID: 26746709 Wolle, D., Cleard, F., Aoki, T., Deshpande, G., Schedl, P. and Karch, F. (2015). Functional requirements for Fab-7 boundary activity in the Bithorax Complex. Mol Cell Biol. PubMed ID: 26303531 Maeda, R. K. and Karch, F. (2015). The open for business model of the bithorax complex in Drosophila. Chromosoma [Epub ahead of print]. PubMed ID: 26067031 Gummalla, M., Galetti, S., Maeda, R. K. and Karch, F. (2014). Hox gene regulation in the central nervous system of. Front Cell Neurosci 8: 96. PubMed ID: 24795565 Bocksberger, M., Karch, F. and Gibert, J. M. (2014). In vivo analysis of a fluorescent SUMO fusion in transgenic. Fly (Austin) 8. PubMed ID: 24583630 Gligorov, D., Sitnik, J. L., Maeda, R. K., Wolfner, M. F., Karch, F. (2013) A novel function for the hox gene abd-B in the male accessory gland regulates the long-term female post-mating response in Drosophila. PLoS Genet 9: e1003395. PubMed ID: 23555301 Raich, N., Mahmoudi, S., Emre, D. and Karess, R. E. (2018). Mad1 influences interphase nucleoplasm organization and chromatin regulation in Drosophila. Open Biol 8(10). PubMed ID: 30333236 Caous, R., Pascal, A., Rome, P., Richard-Parpaillon, L., Karess, R. and Giet, R. (2015). Spindle assembly checkpoint inactivation fails to suppress neuroblast tumour formation in aurA mutant Drosophila. Nat Commun 6: 8879. PubMed ID: 26568519 Defachelles, L., Raich, N., Terracol, R., Baudin, X., Williams, B., Goldberg, M. and Karess, R. E. (2015). RZZ and Mad1 dynamics in Drosophila mitosis. Chromosome Res [Epub ahead of print]. PubMed ID: 25772408 Defachelles, L., Hainline, S. G., Menant, A., Lee, L. A. and Karess, R. E. (2015). A maternal effect rough deal mutation suggesting multiple pathways regulating Drosophila RZZ kinetochore recruitment. J Cell Sci [Epub ahead of print]. PubMed ID: 25616898 Menant, A. and Karess, R. E. (2012). Inducing "cytokinesis" without mitosis in unfertilized Drosophila eggs. Cell Cycle 11: 2856-2863. PubMed ID: 22801541 Althoff, F., Karess, R. E. and Lehner, C. F. (2012). Spindle checkpoint-independent inhibition of mitotic chromosome segregation by Drosophila Mps1. Mol Biol Cell 23: 2275-2291. PubMed ID: 22553353 Zhao, X. and Karpac, J. (2021). Glutamate metabolism directs energetic trade-offs to shape host-pathogen susceptibility in Drosophila. Cell Metab. PubMed ID: 34710355 Zhao, X., Li, X., Shi, X. and Karpac, J. (2020). Diet-MEF2 interactions shape lipid droplet diversification in muscle to influence Drosophila lifespan. Aging Cell 19(7). PubMed ID: 32537848 Vandehoef, C., Molaei, M. and Karpac, J. (2020). Dietary Adaptation of Microbiota in Drosophila Requires NF-κB-Dependent Control of the Translational Regulator 4E-BP. Cell Rep 31(10): 107736. PubMed ID: 32521261 Molaei, M., Vandehoef, C. and Karpac, J. (2019). NF-kappaB shapes metabolic adaptation by attenuating Foxo-mediated lipolysis in Drosophila. Dev Cell. PubMed ID: 31080057 Zhao, X. and Karpac, J. (2017). Muscle directs diurnal energy homeostasis through a myokine-dependent hormone module in Drosophila. Curr Biol [Epub ahead of print]. PubMed ID: 28669758 Karpac, J., Biteau, B. and Jasper, H. (2013). Misregulation of an adaptive metabolic response contributes to the age-related disruption of lipid homeostasis in Drosophila. Cell Rep 4(6): 1250-1261. PubMed ID: 24035390 Kapuria, S., Karpac, J., Biteau, B., Hwangbo, D. and Jasper, H. (2012). Notch-mediated suppression of TSC2 expression regulates cell differentiation in the Drosophila intestinal stem cell lineage. PLoS Genet 8(11): e1003045. PubMed ID: 23144631 Lee, Y. C. G., Ogiyama, Y., Martins, N. M. C., Beliveau, B. J., Acevedo, D., Wu, C. T., Cavalli, G. and Karpen, G. H. (2020). Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin. PLoS Genet 16(3): e1008673. PubMed ID: 32203508 Janssen, A., Colmenares, S. U., Lee, T. and Karpen, G. H. (2019). Timely double-strand break repair and pathway choice in pericentromeric heterochromatin depend on the histone demethylase dKDM4A. Genes Dev 33(1-2): 103-115. PubMed ID: 30578303 Colmenares, S. U., Swenson, J. M., Langley, S. A., Kennedy, C., Costes, S. V. and Karpen, G. H. (2017). Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity. Dev Cell 42(2): 156-169.e155. PubMed ID: 28743002 Lee, Y. C. G. and Karpen, G. H. (2017). Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution. Elife 6. PubMed ID: 28695823 Colmenares, S. U., Swenson, J. M., Langley, S. A., Kennedy, C., Costes, S. V. and Karpen, G. H. (2017). Drosophila histone demethylase KDM4A has enzymatic and non-enzymatic roles in controlling heterochromatin integrity. Dev Cell 42(2): 156-169.e155. PubMed ID: 28743002 Strom, A. R., Emelyanov, A. V., Mir, M., Fyodorov, D. V., Darzacq, X. and Karpen, G. H. (2017). Phase separation drives heterochromatin domain formation. Nature [Epub ahead of print]. PubMed ID: 28636597 Swenson, J.M., Colmenares, S.U., Strom, A.R., Costes, S.V. and Karpen, G.H. (2016). The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic. Elife 5. PubMed ID: 27514026 Janssen, A., Breuer, G. A., Brinkman, E. K., van der Meulen, A. I., Borden, S. V., van Steensel, B., Bindra, R. S., LaRocque, J. R. and Karpen, G. H. (2016). A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin. Genes Dev 30: 1645-1657. PubMed ID: 27474442 Ryu, T., Spatola, B., Delabaere, L., Bowlin, K., Hopp, H., Kunitake, R., Karpen, G. H. and Chiolo, I. (2015). Heterochromatic breaks move to the nuclear periphery to continue recombinational repair. Nat Cell Biol 17: 1401-1411. PubMed ID: 26502056 Ibaraki, K., Nakatsuka, M., Ohsako, T., Watanabe, M., Miyazaki, Y., Shirakami, M., Karr, T. L., Sanuki, R., Tomaru, M. and Takano-Shimizu-Kouno, T. (2021). A cross-species approach for the identification of Drosophila male sterility genes. G3 (Bethesda) 11(8). PubMed ID: 34849808 Karr, T. L., Southern, H., Rosenow, M. A., Gossmann, T. I. and Snook, R. R. (2019). The Old and the New: Discovery Proteomics Identifies Putative Novel Seminal Fluid Proteins in Drosophila. Mol Cell Proteomics 18(Suppl 1): S23-S33. PubMed ID: 30760537 De, S., Cheng, Y., Sun, M. A., Gehred, N. D. and Kassis, J. A. (2019). Structure and function of an ectopic Polycomb chromatin domain. Sci Adv 5(1): eaau9739. PubMed ID: 30662949 De, S., Mitra, A., Cheng, Y., Pfeifer, K. and Kassis, J. A. (2016). Formation of a Polycomb-Domain in the Absence of Strong Polycomb Response Elements. PLoS Genet 12: e1006200. PubMed ID: 27466807 Ray, P., De, S., Mitra, A., Bezstarosti, K., Demmers, J. A., Pfeifer, K. and Kassis, J. A. (2016). Combgap contributes to recruitment of Polycomb group proteins in Drosophila. Proc Natl Acad Sci U S A. PubMed ID: 27001825 Cheng, Y., Brunner, A. L., Kremer, S., DeVido, S. K., Stefaniuk, C. M. and Kassis, J. A. (2014). Co-regulation of invected and engrailed by a complex array of regulatory sequences in Drosophila. Dev Biol. PubMed ID: 25172431 Dorsett, D. and Kassis, J. A. (2014). Checks and Balances between Cohesin and Polycomb in Gene Silencing and Transcription. Curr Biol 24: R535-R539. PubMed ID: 24892918 Brown, J. L. and Kassis, J. A. (2013). Architectural and Functional Diversity of Polycomb Group Response Elements in Drosophila. Genetics. PubMed ID: 23934890 Kassis, J. A., Brown, J. L. (2013) Polycomb Group Response Elements in Drosophila and Vertebrates. Adv Genet 81C: 83-118. PubMed ID: 23419717 Langlais, K. K., Brown, J. L. and Kassis, J. A. (2012). Polycomb Group Proteins Bind an engrailed PRE in Both the "ON" and "OFF" Transcriptional States of engrailed. PLoS One 7: e48765. PubMed ID: 23139817 Cunningham, M. D., Gause, M., et al. (2012). Wap1 antagonizes cohesin binding and promotes Polycomb-group silencing in Drosophila. Development 139(22): 4172-9. PubMed Citation: 23034634 Noyes, A., Stefaniuk, C., Cheng, Y., Kennison, J. A. and Kassis, J. A. (2011). Modulation of the activity of a polycomb-group response element in Drosophila by a mutation in the transcriptional activator woc. G3 (Bethesda) 1: 471-478. PubMed ID: 22384357 Savitsky, M., Solis, G. P., Kryuchkov, M. and Katanaev, V. L. (2020). Humanization of Drosophila Gαo to Model GNAO1 Paediatric Encephalopathies. Biomedicines 8(10). PubMed ID: 33036271 Solis, G. P., Bilousov, O., Koval, A., Luchtenborg, A. M., Lin, C. and Katanaev, V. L. (2017). Golgi-resident Galphao promotes protrusive membrane dynamics. Cell 170(5):939-955. PubMed ID: 28803726 Moon, S., Kim, W., Kim, S., Kim, Y., Song, Y., Bilousov, O., Kim, J., Lee, T., Cha, B., Kim, M., Kim, H., Katanaev, V. L. and Jho, E. H. (2016). Phosphorylation by NLK inhibits YAP-14-3-3-interactions and induces its nuclear localization. EMBO Rep [Epub ahead of print]. PubMed ID: 27979972 Pouly, D., Chenaux, S., Martin, V., Babis, M., Koch, R., Nagoshi, E., Katanaev, V. L., Gachon, F. and Staub, O. (2016). USP2-45 is a circadian clock output effector regulating calcium absorption at the post-translational level. PLoS One 11: e0145155. PubMed ID: 26756164 Luchtenborg, A. M., Purvanov, V., Melnik, B. S., Becker, S. and Katanaev, V. L. (2015). Mode of interaction of the Galphao subunit of heterotrimeric G proteins with the GoLoco1 motif of Drosophila Pins is determined by guanine nucleotides. Biosci Rep. PubMed ID: 26487707 Blagodatski, A., Sergeev, A., Kryuchkov, M., Lopatina, Y. and Katanaev, V.L. (2015). Diverse set of Turing nanopatterns coat corneae across insect lineages. Proc Natl Acad Sci U S A 112: 10750-10755. PubMed ID: 26307762 Luchtenborg, A. M. and Katanaev, V. L. (2014). Lack of evidence of the interaction of the Ass peptide with the Wnt signaling cascade in Drosophila models of Alzheimer's disease. Mol Brain 7: 81. PubMed ID: 25387847 Luchtenborg, A. M., Solis, G. P., Egger-Adam, D., Koval, A., Lin, C., Blanchard, M. G., Kellenberger, S. and Katanaev, V. L. (2014). Heterotrimeric Go protein links Wnt-Frizzled signaling with ankyrins to regulate the neuronal microtubule cytoskeleton. Development 141: 3399-3409. PubMed ID: 25139856 Bilousov, O., Koval, A., Keshelava, A. and Katanaev, V. L. (2014). Identification of novel elements of the Drosophila blisterome sheds light on potential pathological mechanisms of several human diseases. PLoS One 9: e101133. PubMed ID: 24968325 Lin, C., Koval, A., Tishchenko, S., Gabdulkhakov, A., Tin, U., Solis, G. P. and Katanaev, V. L. (2014). Double Suppression of the Galpha Protein Activity by RGS Proteins. Mol Cell 53: 663-671. PubMed ID: 24560274 Chakravarti Dilley, L., Szuperak, M., Gong, N. N., Williams, C. E., Saldana, R. L., Garbe, D. S., Syed, M. H., Jain, R. and Kayser, M. S. (2020). Identification of a molecular basis for the juvenile sleep state. Elife 9. PubMed ID: 32202500 Churgin, M. A., Szuperak, M., Davis, K. C., Raizen, D. M., Fang-Yen, C. and Kayser, M. S. (2019). Quantitative imaging of sleep behavior in Caenorhabditis elegans and larval Drosophila melanogaster. Nat Protoc. PubMed ID: 30953041 Belfer, S. J., Bashaw, A. G., Perlis, M. L. and Kayser, M. S. (2019). A Drosophila model of sleep restriction therapy for insomnia. Mol Psychiatry. PubMed ID: 30824866 Dilley, L. C., Vigderman, A., Williams, C. E. and Kayser, M. S. (2018). Behavioral and Genetic Features of Sleep Ontogeny in Drosophila. Sleep. PubMed ID: 29746663 Szuperak, M., Churgin, M. A., Borja, A. J., Raizen, D. M., Fang-Yen, C. and Kayser, M. S. (2018). A sleep state in Drosophila larvae required for neural stem cell proliferation. Elife 7. PubMed ID: 29424688 Chakravarti, L., Moscato, E. H. and Kayser, M. S. (2017). Unraveling the Neurobiology of Sleep and Sleep Disorders Using Drosophila. Curr Top Dev Biol 121: 253-285. PubMed ID: 28057302 Garbe, D. S., Vigderman, A. S., Moscato, E., Dove, A. E., Vecsey, C. G., Kayser, M. S. and Sehgal, A. (2016). Changes in Female Drosophila Sleep following Mating Are Mediated by SPSN-SAG Neurons. J Biol Rhythms 31(6): 551-567. PubMed ID: 27658900 Shiozaki, H. M., Ohta, K. and Kazama, H. (2020). A Multi-regional Network Encoding Heading and Steering Maneuvers in Drosophila. Neuron. PubMed ID: 32023429 Mercier, D., Tsuchimoto, Y., Ohta, K. and Kazama, H. (2018). Olfactory landmark-based communication in interacting Drosophila. Curr Biol 28(16): 2624-2631.e2625. PubMed ID: 30078566 Shiozaki, H. M. and Kazama, H. (2017). Parallel encoding of recent visual experience and self-motion during navigation in Drosophila. Nat Neurosci. PubMed ID: 28869583 Inada, K., Tsuchimoto, Y. and Kazama, H. (2017). Origins of Cell-Type-Specific Olfactory Processing in the Drosophila Mushroom Body Circuit. Neuron 95(2): 357-367 e354. PubMed ID: 28728024 Badel, L., Ohta, K., Tsuchimoto, Y. and Kazama, H. (2016). Decoding of Context-Dependent Olfactory Behavior in Drosophila. Neuron 91(1): 155-167. PubMed ID: 27321924 Kazama, H. (2015). Systems neuroscience in Drosophila: Conceptual and technical advantages. Neuroscience 296: 3-14. PubMed ID: 24973655 Eisman, R. C., Phelps, M. A. and Kaufman, T. (2015). An amino-terminal Polo kinase interaction motif acts in the regulation of centrosome formation and reveals a novel function for centrosomin (cnn) in Drosophila. Genetics 201: 685-706. PubMed ID: 26447129 Eisman, R. C. and Kaufman, T. C. (2013). Probing the Boundaries of Orthology: The Unanticipated Rapid Evolution of Drosophila Centrosomin. Genetics. PubMed ID: 23749319 Cook, R. K., Christensen, S. J., Deal, J. A., Coburn, R. A., Deal, M. E., Gresens, J. M., Kaufman, T. C. and Cook, K. R. (2012). The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. Genome Biol 13: R21. PubMed ID: 22445104 Holtzman, S., Miller, D., Eisman, R., Kuwayama, H., Niimi, T. and Kaufman, T. (2010). Transgenic tools for members of the genus Drosophila with sequenced genomes. Fly (Austin) 4: 349-362. PubMed ID: 20890112 Yi, S. X., Benoit, J. B., Elnitsky, M. A., Kaufmann, N., Brodsky, J. L., Zeidel, M. L., Denlinger, D. L. and Lee, R. E., Jr. (2011). Function and immuno-localization of aquaporins in the Antarctic midge Belgica antarctica. J Insect Physiol 57(8): 1096-1105. PubMed ID: 21315725 Spring, J. H., Robichaux, S. R., Kaufmann, N. and Brodsky, J. L. (2007). Localization of a Drosophila DRIP-like aquaporin in the Malpighian tubules of the house cricket, Acheta domesticus. Comp Biochem Physiol A Mol Integr Physiol 148(1): 92-100. PubMed ID: 17267256 Scaplen, K. M., Talay, M., Nunez, K. M., Salamon, S., Waterman, A. G., Gang, S., Song, S. L., Barnea, G. and Kaun, K. R. (2020). Circuits that encode and guide alcohol-associated preference. Elife 9. PubMed ID: 32497004 Petruccelli, E., Brown, T., Waterman, A., Ledru, N. and Kaun, K. R. (2020). Alcohol Causes Lasting Differential Transcription in Drosophila Mushroom Body Neurons. Genetics 215(1): 103-116. PubMed ID: 32132098 Scaplen, K. M., Mei, N. J., Bounds, H. A., Song, S. L., Azanchi, R. and Kaun, K. R. (2019). Automated real-time quantification of group locomotor activity in Drosophila melanogaster. Sci Rep 9(1): 4427. PubMed ID: 30872709 Petruccelli, E., Feyder, M., Ledru, N., Jaques, Y., Anderson, E. and Kaun, K. R. (2018). Alcohol Activates Scabrous-Notch to Influence Associated Memories. Neuron 100(5): 1209-1223 e1204. PubMed ID: 30482693 Erkosar, B., Kolly, S., van der Meer, J. R. and Kawecki, T. J. (2017). Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster. MBio 8(5). PubMed ID: 29066546 Hollis, B., Keller, L. and Kawecki, T. J. (2016). Sexual selection shapes development and maturation rates in Drosophila. Evolution [Epub ahead of print]. PubMed ID: 27883363 Hollis, B., Houle, D. and Kawecki, T. J. (2015). Evolution of reduced postcopulatory molecular interactions in Drosophila populations lacking sperm competition. J Evol Biol [Epub ahead of print]. PubMed ID: 26395588 Babin, A., Kolly, S. and Kawecki, T. J. (2014). Virulent bacterial infection improves aversive learning performance in Drosophila melanogaster. Brain Behav Immun. PubMed ID: 24863366 Babin, A., Kolly, S., Schneider, F., Dolivo, V., Zini, M. and Kawecki, T. J. (2014). Fruit flies learn to avoid odours associated with virulent infection. Biol Lett 10: 20140048. PubMed ID: 24598110 Hollis, B. and Kawecki, T. J. (2014). Male cognitive performance declines in the absence of sexual selection. Proc Biol Sci 281: 20132873. PubMed ID: 24573848 Zrelec, V., Zini, M., Guarino, S., Mermoud, J., Oppliger, J., Valtat, A., Zeender, V. and Kawecki, T. J. (2013). Drosophila rely on learning while foraging under semi-natural conditions. Ecol Evol 3: 4139-4148. PubMed ID: 24324865 Vijendravarma, R. K. and Kawecki, T. J. (2013). Epistasis and maternal effects in experimental adaptation to chronic nutritional stress in Drosophila. J Evol Biol. PubMed ID: 24118120 Vijendravarma, R. K., Narasimha, S. and Kawecki, T. J. (2013). Predatory cannibalism in Drosophila melanogaster larvae. Nat Commun 4: 1789. PubMed ID: 23653201 Brown, E. B., Shah, K. D., Palermo, J., Dey, M., Dahanukar, A. and Keene, A. C. (2021). Ir56d-dependent fatty acid responses in Drosophila uncovers taste discrimination between different classes of fatty acids. Elife 10. PubMed ID: 33949306 Brown, E. B., Shah, K. D., Faville, R., Kottler, B. and Keene, A. C. (2020). Drosophila insulin-like peptide 2 mediates dietary regulation of sleep intensity. PLoS Genet 16(3): e1008270. PubMed ID: 32160200 Sah Pamboro, E. L., Brown, E. B. and Keene, A. C. (2019). Dietary fatty acids promote sleep through a taste-independent mechanism. Genes Brain Behav: e12629. PubMed ID: 31845509 Brown, E. B., Slocumb, M. E., Szuperak, M., Kerbs, A., Gibbs, A. G., Kayser, M. S. and Keene, A. C. (2019). Starvation resistance is associated with developmentally specified changes in sleep, feeding and metabolic rate. J Exp Biol. PubMed ID: 30606795 Stahl, B. A., Peco, E., Davla, S., Murakami, K., Caicedo Moreno, N. A., van Meyel, D. J. and Keene, A. C. (2018). The taurine transporter Eaat2 functions in ensheathing glia to modulate sleep and metabolic Rate. Curr Biol. PubMed ID: 30416062 Yurgel, M. E., Shah, K. D., Brown, E. B., Burns, C., Bennick, R. A., DiAngelo, J. R. and Keene, A. C. (2018). Ade2 functions in the Drosophila fat body to promote sleep. G3 (Bethesda). PubMed ID: 30249751 Tauber, J. M., Brown, E. B., Li, Y., Yurgel, M. E., Masek, P. and Keene, A. C. (2017). A subset of sweet-sensing neurons identified by IR56d are necessary and sufficient for fatty acid taste. PLoS Genet 13(11): e1007059. PubMed ID: 29121639 Stahl, B. A., Slocumb, M. E., Chaitin, H., Diangelo, J. R. and Keene, A. C. (2017). Sleep-dependent modulation of metabolic rate in Drosophila. Sleep [Epub ahead of print]. PubMed ID: 28541527 Garbe, D.S., Bollinger, W.L., Vigderman, A., Masek, P., Gertowski, J., Sehgal, A. and Keene, A.C. (2015). Context-specific comparison of sleep acquisition systems in Drosophila. Biol Open [Epub ahead of print]. PubMed ID: 26519516 Slocumb, M.E., Regalado, J.M., Yoshizawa, M., Neely, G.G., Masek, P., Gibbs, A.G. and Keene, A.C. (2015). Enhanced sleep is an evolutionarily adaptive response to starvation stress in Drosophila. PLoS One 10: e0131275. PubMed ID: 26147198 Dag, U., Lei, Z., Le, J. Q., Wong, A., Bushey, D. and Keleman, K. (2019). Neuronal reactivation during post-learning sleep consolidates long-term memory in Drosophila. Elife 8. PubMed ID: 30801246 Zhao, X., Lenek, D., Dag, U., Dickson, B. and Keleman, K. (2018). Persistent activity in a recurrent circuit underlies courtship memory in Drosophila. Elife 7. PubMed ID: 29322941 Koemans, T. S., Oppitz, C., Donders, R. A. T., van Bokhoven, H., Schenck, A., Keleman, K. and Kramer, J. M. (2017). Drosophila courtship conditioning as a measure of learning and memory. J Vis Exp(124) [Epub ahead of print]. PubMed ID: 28605393 Kruttner, S., Traunmuller, L., Dag, U., Jandrasits, K., Stepien, B., Iyer, N., Fradkin, L. G., Noordermeer, J. N., Mensh, B. D. and Keleman, K. (2015). Synaptic Orb2A bridges memory acquisition and late memory consolidation in Drosophila. Cell Rep 11: 1953-1965. PubMed ID: 26095367 Walkinshaw, E., Gai, Y., Farkas, C., Richter, D., Nicholas, E., Keleman, K. and Davis, R.L. (2015). Identification of genes that promote or inhibit olfactory memory formation in Drosophila. Genetics [Epub ahead of print]. PubMed ID: 25644700 Keleman, K., Vrontou, E., Kruttner, S., Yu, J. Y., Kurtovic-Kozaric, A. and Dickson, B. J. (2012). Dopamine neurons modulate pheromone responses in Drosophila courtship learning. Nature 489: 145-149. PubMed ID: 22902500 Kruttner, S., Stepien, B., Noordermeer, J. N., Mommaas, M. A., Mechtler, K., Dickson, B. J. and Keleman, K. (2012). Drosophila CPEB Orb2A mediates memory independent of Its RNA-binding domain. Neuron 76: 383-395. PubMed ID: 23083740 Wang, L., Barbash, D. A. and Kelleher, E. S. (2020). Adaptive evolution among cytoplasmic piRNA proteins leads to decreased genomic auto-immunity. PLoS Genet 16(6): e1008861. PubMed ID: 32525870 Zhang, S. and Kelleher, E. S. (2017). Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR. Mob DNA 8: 10. PubMed ID: 28775768 Srivastav, S. P. and Kelleher, E. S. (2017). Paternal Induction of Hybrid Dysgenesis in Drosophila melanogaster Is Weakly Correlated with Both P-Element and hobo Element Dosage. G3 (Bethesda) 7(5): 1487-1497. PubMed ID: 28315830 Kelleher, E. S. (2016). Reexamining the P-Element Invasion of Drosophila melanogaster Through the Lens of piRNA Silencing. Genetics 203(4): 1513-1531. PubMed ID: 27516614 Hammonds, A. S., Bristow, C. A., Fisher, W. W., Weiszmann, R., Wu, S., Hartenstein, V., Kellis, M., Yu, B., Frise, E. and Celniker, S. E. (2013). Spatial expression of transcription factors in Drosophila embryonic organ development. Genome Biol 14: R140. PubMed ID: 24359758 Spivakov, M., Akhtar, J., Kheradpour, P., Beal, K., Girardot, C., Koscielny, G., Herrero, J., Kellis, M., Furlong, E. E. and Birney, E. (2012). Analysis of variation at transcription factor binding sites in Drosophila and humans. Genome Biol 13: R49. PubMed ID: 22950968 Marbach, D., Roy, S., Ay, F., Meyer, P. E., Candeias, R., Kahveci, T., Bristow, C. A. and Kellis, M. (2012). Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks. Genome Res 22: 1334-1349. PubMed ID: 22456606 Jungreis, I., Lin, M. F., Spokony, R., Chan, C. S., Negre, N., Victorsen, A., White, K. P. and Kellis, M. (2011). Evidence of abundant stop codon readthrough in Drosophila and other metazoa. Genome Res 21: 2096-2113. PubMed ID: 21994247 Robinson, S. P., Simmons, L. W. and Kennington, W. J. (2013). Estimating relatedness and inbreeding using molecular markers and pedigrees: the effect of demographic history. Mol Ecol. PubMed ID: 24102888 Kennington, W. J. and Hoffmann, A. A. (2013). Patterns of genetic variation across inversions: geographic variation in the In(2L)t inversion in populations of Drosophila melanogaster from eastern Australia. BMC Evol Biol 13: 100. PubMed ID: 23688159 Robinson, S. P., Kennington, W. J. and Simmons, L. W. (2012). Assortative mating for relatedness in a large naturally occurring population of Drosophila melanogaster. J Evol Biol 25: 716-725. PubMed ID: 22321157 Lindsley, D. L., Roote, J. and Kennison, J. A. (2013). Anent the Genomics of Spermatogenesis in Drosophila melanogaster. PLoS One 8: e55915. PubMed ID: 23409089 Stultz, B. G., Park, S. Y., Mortin, M. A., Kennison, J. A. and Hursh, D. A. (2012). Hox proteins coordinate peripodial decapentaplegic expression to direct adult head morphogenesis in Drosophila. Dev Biol 369: 362-376. PubMed ID: 22824425 Noyes, A., Stefaniuk, C., Cheng, Y., Kennison, J. A. and Kassis, J. A. (2011). Modulation of the activity of a polycomb-group response element in Drosophila by a mutation in the transcriptional activator woc. G3 (Bethesda) 1: 471-478. PubMed ID: 22384357 Reinhardt, J. A., Kolaczkowski, B., Jones, C. D., Begun, D. J. and Kern, A. D. (2014). Parallel Geographic Variation in Drosophila melanogaster. Genetics. PubMed ID: 24610860 Langley, C. H., Stevens, K., Cardeno, C., Lee, Y. C., Schrider, D. R., Pool, J. E., Langley, S. A., Suarez, C., Corbett-Detig, R. B., Kolaczkowski, B., Fang, S., Nista, P. M., Holloway, A. K., Kern, A. D., Dewey, C. N., Song, Y. S., Hahn, M. W. and Begun, D. J. (2012). Genomic variation in natural populations of Drosophila melanogaster. Genetics 192: 533-598. PubMed ID: 22673804 Kolaczkowski, B., Kern, A. D., Holloway, A. K. and Begun, D. J. (2011). Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster. Genetics 187: 245-260. PubMed ID: 21059887 Berke, B., Le, L. and Keshishian, H. (2020). Target-dependent retrograde signaling mediates synaptic plasticity at the Drosophila neuromuscular junction. Dev Neurobiol. PubMed ID: 31950660 Vonhoff, F. and Keshishian, H. (2017). In vivo calcium signaling during synaptic refinement at the Drosophila neuromuscular junction. J Neurosci [Epub ahead of print]. PubMed ID: 28476946 Vonhoff, F. and Keshishian, H. (2016). Cyclic nucleotide signaling is required during synaptic refinement at the Drosophila neuromuscular junction. Dev Neurobiol [Epub ahead of print]. PubMed ID: 27281494 Berke, B., Wittnam, J., McNeill, E., Van Vactor, D. L. and Keshishian, H. (2013). Retrograde BMP Signaling at the Synapse: A Permissive Signal for Synapse Maturation and Activity-Dependent Plasticity. J Neurosci 33: 17937-17950. PubMed ID: 24198381 Olsen, D. P. and Keshishian, H. (2012). Monitoring membrane excitability in Drosophila expressing modified shaker constructs. Cold Spring Harb Protoc 2012: 226-230. PubMed ID: 22301649 Leiserson, W. M. and Keshishian, H. (2011). Maintenance and regulation of extracellular volume and the ion environment in Drosophila larval nerves. Glia 59: 1312-1321. PubMed ID: 21305613 Saisawang, C. and Ketterman, A. J. (2014). Micro-plasticity of genomes as illustrated by the evolution of glutathione transferases in 12 Drosophila species. PLoS One 9: e109518. PubMed ID: 25310450 Wongtrakul, J., Sukittikul, S., Saisawang, C., Ketterman, A. J. (2012) Mitogen-Activated Protein Kinase p38b Interaction with Delta Class Glutathione Transferases from the Fruit Fly, Drosophila melanogaster. J Insect Sci 12: 107. PubMed ID: 23438069 Saisawang, C., Wongsantichon, J. and Ketterman, A. J. (2012). A preliminary characterization of the cytosolic glutathione transferase proteome from Drosophila melanogaster. Biochem J 442: 181-190. PubMed ID: 22082028 Alavi, M., Song, M., King, G. L., Gillis, T., Propst, R., Lamanuzzi, M., Bousum, A., Miller, A., Allen, R. and Kidd, T. (2016). Dscam1 forms a complex with Robo1 and the N-terminal fragment of Slit to promote the growth of longitudinal axons. PLoS Biol 14: e1002560. PubMed ID: 27654876 Dascenco, D., Erfurth, M. L., Izadifar, A., Song, M., Sachse, S., Bortnick, R., Urwyler, O., Petrovic, M., Ayaz, D., He, H., Kise, Y., Thomas, F., Kidd, T. and Schmucker, D. (2015). Slit and Receptor tyrosine phosphatase 69D confer spatial specificity to axon branching via Dscam1. Cell 162: 1140-1154. PubMed ID: 26317474 Hernandez, K., Myers, L. G., Bowser, M. and Kidd, T. (2015). Genetic tools for the analysis of Drosophila stomatogastric nervous system development. PLoS One 10: e0128290. PubMed ID: 26053861 Newquist, G., Hogan, J., Walker, K., Lamanuzzi, M., Bowser, M. and Kidd, T. (2013). Control of male and female fertility by the netrin axon guidance genes. PLoS One 8: e72524. PubMed ID: 23977313 Newquist, G., Drennan, J. M., Lamanuzzi, M., Walker, K., Clemens, J. C., Kidd, T. (2013) Blocking Apoptotic Signaling Rescues Axon Guidance in Netrin Mutants. Cell Rep. PubMed ID: 23499445 Kidd, T. (2009). Neuroscience. Crossing the line. Science 324: 893-894. PubMed ID: 19443775 Andrews, G. L., Tanglao, S., Farmer, W. T., Morin, S., Brotman, S., Berberoglu, M. A., Price, H., Fernandez, G. C., Mastick, G. S., Charron, F. and Kidd, T. (2008). Dscam guides embryonic axons by Netrin-dependent and -independent functions. Development 135: 3839-3848. PubMed ID: 18948420 Sallee, J. L., Crawford, J. M., Singh, V. and Kiehart, D. P. (2021). Mutations in Drosophila crinkled/Myosin VIIA disrupt denticle morphogenesis. Dev Biol 470: 121-135. PubMed ID: 33248112 Mortensen, R. D., Moore, R. P., Fogerson, S. M., Chiou, H. Y., Obinero, C. V., Prabhu, N. K., Wei, A. H., Crawford, J. M. and Kiehart, D. P. (2018). Identifying genetic players in cell sheet morphogenesis using a Drosophila deficiency screen for genes on Chromosome 2R involved in dorsal closure. G3 (Bethesda). PubMed ID: 29776969 Aristotelous, A. C., Crawford, J. M., Edwards, G. S., Kiehart, D. P. and Venakides, S. (2018). Mathematical models of dorsal closure. Prog Biophys Mol Biol. PubMed ID: 29852207 Lu, H., Sokolow, A., Kiehart, D. P. and Edwards, G. S. (2016). Quantifying dorsal closure in three dimensions. Mol Biol Cell [Epub ahead of print]. PubMed ID: 27798232 Wells, A. R., Zou, R. S., Tulu, U. S., Sokolow, A. C., Crawford, J. M., Edwards, G. S. and Kiehart, D. P. (2014). Complete canthi removal reveals that forces from the amnioserosa are alone sufficient to drive dorsal closure in Drosophila. Mol Biol Cell. PubMed ID: 25253724 Hunter, G. L., Crawford, J. M., Genkins, J. Z. and Kiehart, D. P. (2013). Ion channels contribute to the regulation of cell sheet forces during Drosophila dorsal closure. Development. PubMed ID: 24306105 Sokolow, A., Toyama, Y., Kiehart, D. P. and Edwards, G. S. (2012). Cell ingression and apical shape oscillations during dorsal closure in Drosophila. Biophys J 102: 969-979. PubMed ID: 22404919 Franke, J. D., Montague, R. A. and Kiehart, D. P. (2010). Nonmuscle myosin II is required for cell proliferation, cell sheet adhesion and wing hair morphology during wing morphogenesis. Dev. Biol. 345(2): 117-32. Velichkova, M., Juan, J., Kadandale, P., Jean, S., Ribeiro, I., Raman, V., Stefan, C. and Kiger, A. A. (2010). Drosophila Mtm and class II PI3K coregulate a PI(3)P pool with cortical and endolysosomal functions. J Cell Biol 190(3): 407-425. PubMed ID: 20696708 To, V., Kim, H. J., Jang, W., Sreejith, P. and Kim, C. (2021). Lin28 and Imp are Required for Stability of Bowl Transcripts in Hub Cells of the Drosophila Testis. Dev Reprod 25(4): 313-319. PubMed ID: 35141457 Malik, S., Jang, W., Kim, J. Y. and Kim, C. (2020). Mechanisms ensuring robust repression of the Drosophila female germline stem cell maintenance factor Nanos via posttranscriptional regulation. Faseb j. PubMed ID: 32654316 Malik, S., Jang, W., Park, S. Y. Y., Kim, J. Y. Y., Kwon, K. S. and Kim, C. (2019). The target specificity of the RNA binding protein Pumilio is determined by distinct co-factors. Biosci Rep. PubMed ID: 31097674 Sreejith, P., Jang, W., To, V., Hun Jo, Y., Biteau, B. and Kim, C. (2019). Lin28 is a critical factor in the function and aging of Drosophila testis stem cell niche. Aging (Albany NY). PubMed ID: 30713156 Jang, W., Lee, S., Choi, S. I., Chae, H. S., Han, J., Jo, H., Hwang, S. W., Park, C. S. and Kim, C. (2019). Impairment of proprioceptive movement and mechanical mociception in Drosophila melanogaster larvae lacking Ppk30, a Drosophila member of the DEG/ENaC family. Genes Brain Behav: e12545. PubMed ID: 30675754 Jang, W., Baek, M., Han, Y. S. and Kim, C. (2018). Duox mediates ultraviolet injury-induced nociceptive sensitization in Drosophila larvae. Mol Brain 11(1): 16. PubMed ID: 29540218 Malik, S., Jang, W. and Kim, C. (2017). Protein interaction mapping of translational regulators affecting expression of the critical stem cell factor nos. Dev Reprod 21(4): 449-456. PubMed ID: 29354790 Jang, W., Kim, J. Y., Cui, S., Jo, J., Lee, B. C., Lee, Y., Kwon, K. S., Park, C. S. and Kim, C. (2014). The Anoctamin family channel Subdued mediates thermal nociception in Drosophila. J Biol Chem. PubMed ID: 25505177 Kim, S. Y., Kim, J. Y., Malik, S., Son, W., Kwon, K. S. and Kim, C. (2012). Negative regulation of EGFR/MAPK pathway by Pumilio in Drosophila melanogaster. PLoS One 7: e34016. PubMed ID: 22514614 Jeong, E. B., Jeong, S. S., Cho, E. and Kim, E. Y. (2019). Makorin 1 is required for Drosophila oogenesis by regulating insulin/Tor signaling. PLoS One 14(4): e0215688. PubMed ID: 31009498 Cho, E., Kwon, M., Jung, J., Hyun Kang, D., Jin, S., Choi, S. E., Kang, Y. and Kim, E. Y. (2019). AMP-activated protein kinase regulates circadian rhythm by affecting CLOCK in Drosophila. J Neurosci. PubMed ID: 30819799 Tran, H. T., Cho, E., Jeong, S., Jeong, E. B., Lee, H. S., Jeong, S. Y., Hwang, J. S. and Kim, E. Y. (2018). Makorin 1 regulates developmental timing in Drosophila. Mol Cells. PubMed ID: 30396233 Cho, E., Lee, E. and Kim, E. Y. (2016). Diversification of molecular clockwork for tissue specific function: insight from novel Drosophila Clock mutant homologous to mouse Clock allele. BMB Rep [Epub ahead of print]. PubMed ID: 27756446 Lee, E., Cho, E., Kang, D. H., Jeong, E. H., Chen, Z., Yoo, S. H. and Kim, E. Y. (2016). Pacemaker-neuron-dependent disturbance of the molecular clockwork by a Drosophila CLOCK mutant homologous to the mouse Clock mutation. Proc Natl Acad Sci U S A 113: E4904-4913. PubMed ID: 27489346 Kang, S. W., Lee, E., Cho, E., Seo, J. H., Ko, H. W. and Kim, E. Y. (2015). Drosophila peptidyl-prolyl isomerase Pin1 modulates circadian rhythms via regulating levels of PERIOD. Biochem Biophys Res Commun 463: 235-240. PubMed ID: 25998391 Chang, X., Kim, M. D., Stephens, R., Qu, T., Chiba, A. and Tsechpenakis, G. (2014). Part-based motor neuron recognition in the Drosophila ventral nerve cord. Neuroimage 90: 33-42. PubMed ID: 24373882 Boulina, M., Samarajeewa, H., Baker, J. D., Kim, M. D. and Chiba, A. (2013). Live imaging of multicolor-labeled cells in Drosophila. Development 140: 1605-1613. PubMed ID: 23482495 Park, S., Alfa, R. W., Topper, S. M., Kim, G. E., Kockel, L. and Kim, S. K. (2014). A genetic strategy to measure circulating Drosophila insulin reveals genes regulating insulin production and secretion. PLoS Genet 10: e1004555. PubMed ID: 25101872 Cao, J., Ni, J., Ma, W., Shiu, V., Milla, L. A., Park, S., Spletter, M. L., Tang, S., Zhang, J., Wei, X., Kim, S. K. and Scott, M. P. (2014). Insight into insulin secretion from transcriptome and genetic analysis of insulin-producing cells of Drosophila. Genetics 197: 175-192. PubMed ID: 24558258 Park, S., Bustamante, E. L., Antonova, J., McLean, G. W. and Kim, S. K. (2011). Specification of Drosophila corpora cardiaca neuroendocrine cells from mesoderm is regulated by Notch signaling. PLoS Genet 7: e1002241. PubMed ID: 21901108 Zhang, C., Kim, A. J., Rivera-Perez, C., Noriega, F. G. and Kim, Y. J. (2022). The insect somatostatin pathway gates vitellogenesis progression during reproductive maturation and the post-mating response. Nat Commun 13(1): 969. PubMed ID: 35181671 Zhang, C., Daubnerova, I., Jang, Y. H., Kondo, S., Zitnan, D. and Kim, Y. J. (2021). The neuropeptide allatostatin C from clock-associated DN1p neurons generates the circadian rhythm for oogenesis. Proc Natl Acad Sci U S A 118(4). PubMed ID: 33479181 Lee, J. H., Lee, N. R., Kim, D. H. and Kim, Y. J. (2020). Molecular characterization of ligand selectivity of the sex peptide receptors of Drosophila melanogaster and Aedes aegypti. Insect Biochem Mol Biol: 103472. PubMed ID: 32971207 Jang, Y. H., Chae, H. S. and Kim, Y. J. (2017). Female-specific myoinhibitory peptide neurons regulate mating receptivity in Drosophila melanogaster. Nat Commun 8(1): 1630. PubMed ID: 29158481 Lee, H., Choi, H.W., Zhang, C., Park, Z.Y. and Kim, Y.J. (2016). A pair of oviduct-born Pickpocket neurons important for egg-laying in Drosophila melanogaster. Mol Cells [Epub ahead of print]. PubMed ID: 27378227 Lee, K. M., Daubnerova, I., Isaac, R. E., Zhang, C., Choi, S., Chung, J. and Kim, Y. J. (2015). A Neuronal Pathway that Controls Sperm Ejection and Storage in Female Drosophila. Curr Biol [Epub ahead of print]. PubMed ID: 25702579 Chen, J., Choi, M. S., Mizoguchi, A., Veenstra, J. A., Kang, K., Kim, Y. J. and Kwon, J. Y. (2015). Isoform-specific expression of the neuropeptide orcokinin in Drosophila melanogaster. Peptides. PubMed ID: 25600008 Oh, Y., Yoon, S. E., Zhang, Q., Chae, H. S., Daubnerova, I., Shafer, O. T., Choe, J. and Kim, Y. J. (2014). A homeostatic sleep-stabilizing pathway in Drosophila composed of the sex peptide receptor and its ligand, the myoinhibitory peptide. PLoS Biol 12: e1001974. PubMed ID: 25333796 Isaac, R. E., Kim, Y. J. and Audsley, N. (2014). The degradome and the evolution of Drosophila sex peptide as a ligand for the MIP receptor. Peptides 53: 258-264. PubMed ID: 24398368 Ng'oma, E., Fidelis, W., Middleton, K. M. and King, E. G. (2019). The evolutionary potential of diet-dependent effects on lifespan and fecundity in a multi-parental population of Drosophila melanogaster. Heredity (Edinb) 122(5): 582-594. PubMed ID: 30356225 Stanley, P. D., Ng'oma, E., O'Day, S. and King, E. G. (2017). Genetic Dissection of Nutrition-Induced Plasticity in Insulin/Insulin-Like Growth Factor Signaling and Median Life Span in a Drosophila Multiparent Population. Genetics 206(2): 587-602. PubMed ID: 28592498 King, E. G. and Long, A. D. (2017). The Beavis Effect in Next-Generation Mapping Panels in Drosophila melanogaster. G3 (Bethesda) 7(6): 1643-1652. PubMed ID: 28592647 Najarro, M. A., Hackett, J. L., Smith, B. R., Highfill, C. A., King, E. G., Long, A. D. and Macdonald, S. J. (2015). Identifying Loci Contributing to Natural Variation in Xenobiotic Resistance in Drosophila. PLoS Genet 11(11): e1005663. PubMed ID: 26619284 Huynh, N., Ou, Q., Cox, P., Lill, R. and King-Jones, K. (2019). Glycogen branching enzyme controls cellular iron homeostasis via Iron Regulatory Protein 1 and mitoNEET. Nat Commun 10(1): 5463. PubMed ID: 31784520 Huynh, N., Zeng, J., Liu, W. and King-Jones, K. (2018). A Drosophila CRISPR/Cas9 toolkit for conditionally manipulating gene expression in the prothoracic gland as a test case for polytene tissues. G3 (Bethesda). PubMed ID: 30213867 Zeng, J., Kamiyama, T., Niwa, R. and King-Jones, K. (2018). The Drosophila CCR4-NOT complex is required for cholesterol homeostasis and steroid hormone synthesis. Dev Biol. PubMed ID: 30149007 Di Cara, F. and King-Jones, K. (2016). The Circadian clock is a key driver of steroid hormone production in Drosophila. Curr Biol [Epub ahead of print]. PubMed ID: 27546572 Ou, Q., Zeng, J., Yamanaka, N., Brakken-Thal, C., O'Connor, M. B. and King-Jones, K. (2016). The insect prothoracic gland as a model for steroid hormone biosynthesis and regulation. Cell Rep 16: 247-262. PubMed ID: 27320926 Di Cara, F., Maile, T. M., Parsons, B. D., Magico, A., Basu, S., Tapon, N. and King-Jones, K. (2015). The Hippo pathway promotes cell survival in response to chemical stress. Cell Death Differ [Epub ahead of print]. PubMed ID: 26021298 Di Cara, F. and King-Jones, K. (2013). How clocks and hormones act in concert to control the timing of insect development. Curr Top Dev Biol 105: 1-36. PubMed ID: 23962837 Ou, Q., King-Jones, K. (2013) What goes up must come down: transcription factors have their say in making ecdysone pulses. Curr Top Dev Biol 103: 35-71. PubMed ID: 23347515 Ou, Q., Magico, A. and King-Jones, K. (2011). Nuclear receptor DHR4 controls the timing of steroid hormone pulses during Drosophila development. PLoS Biol 9: e1001160. PubMed ID: 21980261 Kaas, G. A., Kasuya, J., Lansdon, P., Ueda, A., Iyengar, A., Wu, C. F. and Kitamoto, T. (2016). Lithium-responsive seizure-like hyperexcitability is caused by a mutation in the Drosophila boltage-gated Sodium channel gene paralytic. eNeuro 3. PubMed ID: 27844061 Petruccelli, E., Li, Q., Rao, Y. and Kitamoto, T. (2016). The unique dopamine/ecdysteroid receptor modulates ethanol-induced sedation in Drosophila. J Neurosci 36: 4647-4657. PubMed ID: 27098705 Petruccelli, E., Lansdon, P. and Kitamoto, T. (2015). Exaggerated nighttime sleep and defective sleep homeostasis in a Drosophila knock-in model of human epilepsy. PLoS One 10: e0137758. PubMed ID: 26361221 Sakai, T., Watanabe, K., Ohashi, H., Sato, S., Inami, S., Shimada, N. and Kitamoto, T. (2014). Insulin-Producing Cells Regulate the Sexual Receptivity through the Painless TRP Channel in Drosophila Virgin Females. PLoS One 9: e88175. PubMed ID: 24505416 Ishimoto, H., Wang, Z., Rao, Y., Wu, C. F. and Kitamoto, T. (2013). A Novel Role for Ecdysone in Drosophila Conditioned Behavior: Linking GPCR-Mediated Non-canonical Steroid Action to cAMP Signaling in the Adult Brain. PLoS Genet 9: e1003843. PubMed ID: 24130506 Sakai, T., Sato, S., Ishimoto, H. and Kitamoto, T. (2012). Significance of the centrally expressed TRP channel painless in Drosophila courtship memory. Learn Mem 20: 34-40. PubMed ID: 23247253 Sakai, T., Inami, S., Sato, S. and Kitamoto, T. (2012). Fan-shaped body neurons are involved in period-dependent regulation of long-term courtship memory in Drosophila. Learn Mem 19: 571-574. PubMed ID: 23154928 Ishimoto, H., Lark, A. and Kitamoto, T. (2012). Factors that Differentially Affect Daytime and Nighttime Sleep in Drosophila melanogaster. Front Neurol 3: 24. PubMed ID: 22375135 Scholz, N., Ehmann, N., Sachidanandan, D., Imig, C., Cooper, B. H., Jahn, O., Reim, K., Brose, N., Meyer, J., Lamberty, M., Altrichter, S., Bormann, A., Hallermann, S., Pauli, M., Heckmann, M., Stigloher, C., Langenhan, T. and Kittel, R. J. (2019). Complexin cooperates with Bruchpilot to tether synaptic vesicles to the active zone cytomatrix. J Cell Biol 218(3): 1011-1026. PubMed ID: 30782781 Scholz, N., Guan, C., Nieberler, M., Grotemeyer, A., Maiellaro, I., Gao, S., Beck, S., Pawlak, M., Sauer, M., Asan, E., Rothemund, S., Winkler, J., Promel, S., Nagel, G., Langenhan, T. and Kittel, R. J. (2017). Mechano-dependent signaling by Latrophilin/CIRL quenches cAMP in proprioceptive neurons. Elife 6. PubMed ID: 28784204 Dawydow, A., Gueta, R., Ljaschenko, D., Ullrich, S., Hermann, M., Ehmann, N., Gao, S., Fiala, A., Langenhan, T., Nagel, G. and Kittel, R. J. (2014). Channelrhodopsin-2-XXL, a powerful optogenetic tool for low-light applications. Proc Natl Acad Sci U S A. PubMed ID: 25201989 Ljaschenko, D., Ehmann, N. and Kittel, R. J. (2013). Hebbian Plasticity Guides Maturation of Glutamate Receptor Fields In Vivo. Cell Rep. PubMed ID: 23643532 Hallermann, S., Kittel, R. J., Wichmann, C., Weyhersmuller, A., Fouquet, W., Mertel, S., Owald, D., Eimer, S., Depner, H., Schwarzel, M., Sigrist, S. J. and Heckmann, M. (2010). Naked dense bodies provoke depression. J Neurosci 30: 14340-14345. PubMed ID: 20980589 Hallermann, S., Heckmann, M. and Kittel, R. J. (2010). Mechanisms of short-term plasticity at neuromuscular active zones of Drosophila. HFSP J 4: 72-84. PubMed ID: 20811513 Bachmann, A., Kobler, O., Kittel, R. J., Wichmann, C., Sierralta, J., Sigrist, S. J., Gundelfinger, E. D., Knust, E. and Thomas, U. (2010). A perisynaptic menage a trois between Dlg, DLin-7, and Metro controls proper organization of Drosophila synaptic junctions. J Neurosci 30: 5811-5824. PubMed ID: 20427642 Lund, V. K., Madsen, K. L. and Kjaerulff, O. (2018). Drosophila Rab2 controls endosome-lysosome fusion and LAMP delivery to late endosomes. Autophagy. PubMed ID: 29940804 Gerdoe-Kristensen, S., Lund, V. K., Wandall, H. H. and Kjaerulff, O. (2016). Mactosylceramide prevents glial cell overgrowth by inhibiting insulin and fibroblast growth factor receptor signaling. J Cell Physiol [Epub ahead of print]. PubMed ID: 28019653 Dahlgaard, K., Jung, A., Qvortrup, K., Clausen, H., Kjaerulff, O. and Wandall, H. H. (2012). Neurofibromatosis-like phenotype in Drosophila caused by lack of glucosylceramide extension. Proc Natl Acad Sci U S A 109(18): 6987-6992. PubMed ID: 22493273 Jansen, A. M., Nassel, D. R., Madsen, K. L., Jung, A. G., Gether, U. and Kjaerulff, O. (2009). PICK1 expression in the Drosophila central nervous system primarily occurs in the neuroendocrine system. J Comp Neurol 517(3): 313-332. PubMed ID: 19757495 Rocha, F. B. and Klaczko, L. B. (2012). Connecting the dots of nonlinear reaction norms unravels the threads of genotype-environment interaction in Drosophila. Evolution 66: 3404-3416. PubMed ID: 23106706 Ventura, I. M., Martins, A. B., Lyra, M. L., Andrade, C. A., Carvalho, K. A. and Klaczko, L. B. (2012). Spiroplasma in Drosophila melanogaster populations: prevalence, male-killing, molecular identification, and no association with Wolbachia. Microb Ecol 64: 794-801. PubMed ID: 22562106 Yildirim, K., Winkler, B., Pogodalla, N., Mackensen, S., Baldenius, M., Garcia, L., Naffin, E., Rodrigues, S. and Klambt, C. (2022). Redundant functions of the SLC5A transporters Rumpel, Bumpel, and Kumpel in ensheathing glial cells. Biol Open 11(1). PubMed ID: 34897385 Pogodalla, N., Kranenburg, H., Rey, S., Rodrigues, S., Cardona, A. and Klambt, C. (2021). Drosophila ß(Heavy)-Spectrin is required in polarized ensheathing glia that form a diffusion-barrier around the neuropil. Nat Commun 12(1): 6357. PubMed ID: 34737284 Kottmeier, R., Bittern, J., Schoofs, A., Scheiwe, F., Matzat, T., Pankratz, M. and Klambt, C. (2020). Wrapping glia regulates neuronal signaling speed and precision in the peripheral nervous system of Drosophila. Nat Commun 11(1): 4491. PubMed ID: 32901033 Neuert, H., Deing, P., Krukkert, K., Naffin, E., Steffes, G., Risse, B., Silies, M. and Klambt, C. (2019). The Drosophila NCAM homolog Fas2 signals independent of adhesion. Development. PubMed ID: 31862845 Dlugos, C. P., Picciotto, C., Lepa, C., Krakow, M., Stober, A., Eddy, M. L., Weide, T., Jeibmann, A., Krahn, M. P., Van Marck, V., Klingauf, J., Ricker, A., Wedlich-Soldner, R., Pavenstadt, H., Klambt, C. and George, B. (2019). Nephrin Signaling Results in Integrin beta1 Activation. J Am Soc Nephrol. PubMed ID: 31097607 Petri, J., Syed, M. H., Rey, S. and Klambt, C. (2019). Non-cell-autonomous function of the GPI-anchored protein Undicht during septate junction assembly. Cell Rep 26(6): 1641-1653.e1644. PubMed ID: 30726744 Babatz, F., Naffin, E. and Klambt, C. (2018). The Drosophila blood-brain barrier adapts to cell growth by unfolding of pre-existing septate junctions. Dev Cell. PubMed ID: 30482667 Kastl, P., Manikowski, D., Steffes, G., Schurmann, S., Bandari, S., Klambt, C. and Grobe, K. (2018). Disrupting Hedgehog Cardin-Weintraub sequence and positioning changes cellular differentiation and compartmentalization in vivo. Development 145(18). PubMed ID: 30242104 Otto, N., Marelja, Z., Schoofs, A., Kranenburg, H., Bittern, J., Yildirim, K., Berh, D., Bethke, M., Thomas, S., Rode, S., Risse, B., Jiang, X., Pankratz, M., Leimkuhler, S. and Klambt, C. (2018). The sulfite oxidase Shopper controls neuronal activity by regulating glutamate homeostasis in Drosophila ensheathing glia. Nat Commun 9(1): 3514. PubMed ID: 30158546 Pannen, H., Rapp, T. and Klein, T. (2020). The ESCRT Machinery regulates Retromer dependent Transcytosis of Septate Junction Components in Drosophila. Elife 9. PubMed ID: 33377869 Baeumers, M., Ruhnau, K., Breuer, T., Pannen, H., Goerlich, B., Kniebel, A., Haensch, S., Weidtkamp-Peters, S., Schmitt, L. and Klein, T. (2020). Lethal (2) giant discs (Lgd)/CC2D1 is required for the full activity of the ESCRT machinery. BMC Biol 18(1): 200. PubMed ID: 33349255 Baumers, M., Klose, S., Bruser, C., Haag, C., Hansch, S., Pannen, H., Weidtkamp-Peters, S., Feldbrugge, M. and Klein, T. (2019). The auxiliary ESCRT complexes provide robustness to cold in poikilothermic organisms. Biol Open 8(9). PubMed ID: 31412999 Morawa, K.S., Schneider, M. and Klein, T. (2015). Lgd regulates the activity of the BMP/Dpp signalling pathway during Drosophila oogenesis. Development 142: 1325-1335. PubMed ID: 25804739 Troost, T., Schneider, M. and Klein, T. (2015). A Re-examination of the Selection of the Sensory Organ Precursor of the Bristle Sensilla of Drosophila melanogaster. PLoS Genet 11: e1004911. PubMed ID: 25569355 Yousefian, J., Troost, T., Grawe, F., Sasamura, T., Fortini, M., Klein, T. (2013) Dmon1 controls recruitment of Rab7 to maturing endosomes in Drosophila. J Cell Sci. PubMed ID: 23418349 Schneider, M., Troost, T., Grawe, F., Martinez-Arias, A. and Klein, T. (2012). Activation of Notch in lgd mutant cells requires the fusion of late endosomes with the lysosome. J Cell Sci. PubMed ID: 23178945 Troost, T. and Klein, T. (2012). Sequential Notch signalling at the boundary of fringe expressing and non-expressing cells. PLoS One 7: e49007. PubMed ID: 23152840 Troost, T., Jaeckel, S., Ohlenhard, N. and Klein, T. (2012). The tumour suppressor Lethal (2) giant discs is required for the function of the ESCRT-III component Shrub/CHMP4. J Cell Sci 125: 763-776. PubMed ID: 22389409 Ilyin, A. A., Stolyarenko, A. D., Klenov, M. S. and Shevelyov, Y. Y. (2020). Various modes of HP1a interactions with the euchromatic chromosome arms in Drosophila ovarian somatic cells. Chromosoma. PubMed ID: 32500264 Sokolova, O. A., Mikhaleva, E. A., Kharitonov, S. L., Abramov, Y. A., Gvozdev, V. A. and Klenov, M. S. (2020). Special vulnerability of somatic niche cells to transposable element activation in Drosophila larval ovaries. Sci Rep 10(1): 1076. PubMed ID: 31974416 Ryazansky, S. S., Stolyarenko, A. D., Klenov, M. S. and Gvozdev, V. A. (2017). Induction of Transposon Silencing in the Drosophila Germline. Biochemistry (Mosc) 82(5): 565-571. PubMed ID: 28601066 Ilyin, A. A., Ryazansky, S. S., Doronin, S. A., Olenkina, O. M., Mikhaleva, E. A., Yakushev, E. Y., Abramov, Y. A., Belyakin, S. N., Ivankin, A. V., Pindyurin, A. V., Gvozdev, V. A., Klenov, M. S. and Shevelyov, Y. Y. (2017). Piwi interacts with chromatin at nuclear pores and promiscuously binds nuclear transcripts in Drosophila ovarian somatic cells. Nucleic Acids Res 45(13): 7666-7680. PubMed ID: 28472469 Klenov, M. S., Lavrov, S. A., Korbut, A. P., Stolyarenko, A. D., Yakushev, E. Y., Reuter, M., Pillai, R. S. and Gvozdev, V. A. (2014). Impact of nuclear Piwi elimination on chromatin state in Drosophila melanogaster ovaries. Nucleic Acids Res 42(10): 6208-6218. PubMed ID: 24782529 Klepsatel, P. and Galikova, M. (2022). Developmental temperature affects thermal dependence of locomotor activity in Drosophila. J Therm Biol 103: 103153. PubMed ID: 35027204 Klepsatel, P., Girish, T. N. and Galikova, M. (2020). Acclimation temperature affects thermal reaction norms for energy reserves in Drosophila. Sci Rep 10(1): 21681. PubMed ID: 33303846 Khallaf, M. A., Auer, T. O., Grabe, V., Depetris-Chauvin, A., Ammagarahalli, B., Zhang, D. D., Lavista-Llanos, S., Kaftan, F., Weissflog, J., Matzkin, L. M., Rollmann, S. M., Lofstedt, C., Svatos, A., Dweck, H. K. M., Sachse, S., Benton, R., Hansson, B. S. and Knaden, M. (2020). Mate discrimination among subspecies through a conserved olfactory pathway. Sci Adv 6(25): eaba5279. PubMed ID: 32704542 Qiao, H., Keesey, I. W., Hansson, B. S. and Knaden, M. (2019). Gut microbiota affects development and olfactory behavior in Drosophila melanogaster. J Exp Biol. PubMed ID: 30679242 Koerte, S., Keesey, I. W., Khallaf, M. A., Cortes Llorca, L., Grosse-Wilde, E., Hansson, B. S. and Knaden, M. (2018). Evaluation of the DREAM Technique for a High-Throughput Deorphanization of Chemosensory Receptors in Drosophila. Front Mol Neurosci 11: 366. PubMed ID: 30356801 Dweck, H. K. M., Ebrahim, S. A. M., Retzke, T., Grabe, V., Weissflog, J., Svatos, A., Hansson, B. S. and Knaden, M. (2018). The olfactory logic behind fruit odor preferences in larval and adult Drosophila. Cell Rep 23(8): 2524-2531. PubMed ID: 29791860 Keesey, I. W., Koerte, S., Khallaf, M. A., Retzke, T., Guillou, A., Grosse-Wilde, E., Buchon, N., Knaden, M. and Hansson, B. S. (2017). Pathogenic bacteria enhance dispersal through alteration of Drosophila social communication. Nat Commun 8(1): 265. PubMed ID: 28814724 Retzke, T., Thoma, M., Hansson, B. S. and Knaden, M. (2017). Potencies of effector genes in silencing odor-guided behavior in Drosophila melanogaster. J Exp Biol. PubMed ID: 28235908 Keesey, I. W., Koerte, S., Retzke, T., Haverkamp, A., Hansson, B. S. and Knaden, M. (2016). Adult frass provides a pheromone signature for Drosophila feeding and aggregation. J Chem Ecol [Epub ahead of print]. PubMed ID: 27539589 Ebrahim, S. A., Dweck, H. K., Stokl, J., Hofferberth, J. E., Trona, F., Weniger, K., Rybak, J., Seki, Y., Stensmyr, M. C., Sachse, S., Hansson, B. S. and Knaden, M. (2015). Drosophila Avoids Parasitoids by Sensing Their Semiochemicals via a Dedicated Olfactory Circuit. PLoS Biol 13: e1002318. PubMed ID: 26674493 Thoma, M., Hansson, B. S. and Knaden, M. (2015). High-resolution quantification of odor-guided behavior in Drosophila melanogaster using the flywalk paradigm. J Vis Exp [Epub ahead of print]. PubMed ID: 26709624 Dweck, H.K., Ebrahim, S.A., Thoma, M., Mohamed, A.A., Keesey, I.W., Trona, F., Lavista-Llanos, S., Svatoš, A., Sachse, S., Knaden, M. and Hansson, B.S. (2015). Pheromones mediating copulation and attraction in Drosophila. Proc Natl Acad Sci U S A [Epub ahead of print]. PubMed ID: 25964351 Abdusselamoglu, M. D., Landskron, L., Bowman, S. K., Eroglu, E., Burkard, T., Kingston, R. E. and Knoblich, J. A. (2019). Dynamics of activating and repressive histone modifications in Drosophila neural stem cell lineages and brain tumors. Development. PubMed ID: 31748204 Abdusselamoglu, M. D., Eroglu, E., Burkard, T. R. and Knoblich, J. A. (2019). The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop. Elife 8. PubMed ID: 31329099 Wissel, S., Harzer, H., Bonnay, F., Burkard, T. R., Neumuller, R. A. and Knoblich, J. A. (2018). Time-resolved transcriptomics in neural stem cells identifies a v-ATPase/Notch regulatory loop. J Cell Biol. PubMed ID: 29959232 Wissel, S., Harzer, H., Bonnay, F., Burkard, T. R., Neumuller, R. A. and Knoblich, J. A. (2018). Time-resolved transcriptomics in neural stem cells identifies a v-ATPase/Notch regulatory loop. J Cell Biol. PubMed ID: 29959232 Landskron, L., Steinmann, V., Bonnay, F., Burkard, T. R., Steinmann, J., Reichardt, I., Harzer, H., Laurenson, A. S., Reichert, H. and Knoblich, J. A. (2018). The asymmetrically segregating lncRNA cherub is required for transforming stem cells into malignant cells. Elife 7. PubMed ID: 29580384 Reichardt, I., Bonnay, F., Steinmann, V., Loedige, I., Burkard, T. R., Meister, G. and Knoblich, J. A. (2017). The tumor suppressor Brat controls neuronal stem cell lineages by inhibiting Deadpan and Zelda. EMBO Rep. PubMed ID: 29191977 Abramczuk, M. K., Burkard, T. R., Rolland, V., Steinmann, V., Duchek, P., Jiang, Y., Wissel, S., Reichert, H. and Knoblich, J. A. (2017). The splicing co-factor Barricade/Tat-SF1, is required for cell cycle and lineage progression in Drosophila neural stem cells. Development. PubMed ID: 28935704 Wissel, S., Kieser, A., Yasugi, T., Duchek, P., Roitinger, E., Gokcezade, J. F., Steinmann, V., Gaul, U., Mechtler, K., Forstemann, K., Knoblich, J. A. and Neumuller, R. A. (2016). A combination of CRISPR/Cas9 and standardized RNAi as a versatile platform for the characterization of gene function. G3 (Bethesda) [Epub ahead of print]. PubMed ID: 27280787 Marchetti, G., Reichardt, I., Knoblich, J. A. and Besse, F. (2014). The TRIM-NHL Protein Brat Promotes Axon Maintenance by Repressing src64B Expression. J Neurosci 34: 13855-13864. PubMed ID: 25297111 Homem, C. C., Steinmann, V., Burkard, T. R., Jais, A., Esterbauer, H. and Knoblich, J. A. (2014). Ecdysone and mediator change energy metabolism to terminate proliferation in Drosophila neural stem cells. Cell 158: 874-888. PubMed ID: 25126791 Mauri, F., Reichardt, I., Mummery-Widmer, J. L., Yamazaki, M., Knoblich, J. A. (2014) The conserved Discs-large binding partner Banderuola regulates asymmetric cell division in Drosophila. Curr Biol. PubMed ID: 25088559 Bhagavatula, S. and Knust, E. (2020). A putative stem-loop structure in Drosophila crumbs is required for mRNA localisation in epithelia and germline cells. J Cell Sci. PubMed ID: 33310910 Hebbar, S., Schuhmann, K., Shevchenko, A. and Knust, E. (2020). Hydroxylated sphingolipid biosynthesis regulates photoreceptor apical domain morphogenesis. J Cell Biol 219(12). PubMed ID: 33048164 Raghuraman, B. K., Hebbar, S., Kumar, M., Moon, H., Henry, I., Knust, E. and Shevchenko, A. (2020). Absolute Quantification of Proteins in the Eye of Drosophila melanogaster. Proteomics: e1900049. PubMed ID: 32663363 Kraut, R. S. and Knust, E. (2019). Changes in endolysosomal organization define a pre-degenerative state in the crumbs mutant Drosophila retina. PLoS One 14(12): e0220220. PubMed ID: 31834921 Lattner, J., Leng, W., Knust, E., Brankatschk, M. and Flores-Benitez, D. (2019). Crumbs organizes the transport machinery by regulating apical levels of PI(4,5)P2 in Drosophila. Elife 8. PubMed ID: 31697234 Skouloudaki, K., Christodoulou, I., Khalili, D., Tsarouhas, V., Samakovlis, C., Tomancak, P., Knust, E. and Papadopoulos, D. K. (2019). Yorkie controls tube length and apical barrier integrity during airway development. J Cell Biol. PubMed ID: 31315941 Bajur, A. T., Iyer, K. V. and Knust, E. (2019). Cytocortex-dependent dynamics of Drosophila Crumbs controls junctional stability and tension during germ band retraction. J Cell Sci. PubMed ID: 31300472 Hartenstein, V., Yuan, M., Younossi-Hartenstein, A., Karandikar, A., Bernardo-Garcia, F. J., Sprecher, S. and Knust, E. (2019). Serial electron microscopic reconstruction of the Drosophila larval eye: Photoreceptors with a rudimentary rhabdomere of microvillar-like processes. Dev Biol. PubMed ID: 31158364 Skouloudaki, K., Papadopoulos, D. K., Tomancak, P. and Knust, E. (2019). The apical protein Apnoia interacts with Crumbs to regulate tracheal growth and inflation. PLoS Genet 15(1): e1007852. PubMed ID: 30645584 Tsoumpekos, G., Nemetschke, L. and Knust, E. (2018). Drosophila Big bang regulates the apical cytocortex and wing growth through junctional tension. J Cell Biol [Epub ahead of print]. PubMed ID: 29326288 Das, S. and Knust, E. (2018). A dual role of the extracellular domain of Drosophila Crumbs for morphogenesis of the embryonic neuroectoderm. Biol Open 7(1). PubMed ID: 29374056 Masukawa, M., Ishizaki, Y., Miura, H., Hayashi, M., Ota, R. and Kobayashi, S. (2021). Male-biased protein expression in primordial germ cells, identified through a comparative study of UAS vectors in Drosophila. Sci Rep 11(1): 21482. PubMed ID: 34728669 Ota, R., Hayashi, M., Morita, S., Miura, H. and Kobayashi, S. (2021). Absence of X-chromosome dosage compensation in the primordial germ cells of Drosophila embryos. Sci Rep 11(1): 4890. PubMed ID: 33649478 Ota, R. and Kobayashi, S. (2020). Myc plays an important role in Drosophila P-M hybrid dysgenesis to eliminate germline cells with genetic damage. Commun Biol 3(1): 185. PubMed ID: 32322015 Morita, S., Ota, R., Hayashi, M. and Kobayashi, S. (2020). Repression of G1/S Transition by Transient Inhibition of miR-10404 Expression in Drosophila Primordial Germ Cells. iScience 23(3): 100950. PubMed ID: 32179474 Asaoka, M., Hanyu-Nakamura, K., Nakamura, A. and Kobayashi, S. (2019). Maternal Nanos inhibits Importin-alpha2/Pendulin-dependent nuclear import to prevent somatic gene expression in the Drosophila germline. PLoS Genet 15(5): e1008090. PubMed ID: 31091233 Morita, S., Ota, R. and Kobayashi, S. (2018). Downregulation of NHP2 promotes proper cyst formation in Drosophila ovary. Dev Growth Differ. PubMed ID: 29845608 Sugimori, S., Kumata, Y. and Kobayashi, S. (2018). Maternal Nanos-dependent RNA stabilization in the primordial germ cells of Drosophila embryos. Dev Growth Differ 60(1): 63-75. PubMed ID: 29278271 Ota, R., Morita, S., Sato, M., Shigenobu, S., Hayashi, M. and Kobayashi, S. (2017). Transcripts immunoprecipitated with Sxl protein in primordial germ cells of Drosophila embryos. Dev Growth Differ. PubMed ID: 29124738 Hayashi, M., Shinozuka, Y., Shigenobu, S., Sato, M., Sugimoto, M., Ito, S., Abe, K. and Kobayashi, S. (2017). Conserved role of Ovo in germline development in mouse and Drosophila. Sci Rep 7: 40056. PubMed ID: 28059165 Mukai, M., Hira, S., Nakamura, K., Nakamura, S., Kimura, H., Sato, M. and Kobayashi, S. (2015). H3K36 trimethylation-mediated epigenetic regulation is activated by Bam and promotes germ cell differentiation during early oogenesis in Drosophila. Biol Open. PubMed ID: 25572421 Ohhara, Y., Shimada-Niwa, Y., Niwa, R., Kayashima, Y., Hayashi, Y., Akagi, K., Ueda, H., Yamakawa-Kobayashi, K. and Kobayashi, S. (2015). Autocrine regulation of ecdysone synthesis by beta3-octopamine receptor in the prothoracic gland is essential for Drosophila metamorphosis. Proc Natl Acad Sci U S A [Epub ahead of print]. PubMed ID: 25605909 Bednarova, A., Tomcala, A., Mochanova, M., Kodrik, D. and Krishnan, N. (2018). Disruption of Adipokinetic Hormone Mediated Energy Homeostasis Has Subtle Effects on Physiology, Behavior and Lipid Status During Aging in Drosophila. Front Physiol 9: 949. PubMed ID: 29627353 Weilguny, L., Vlachos, C., Selvaraju, D. and Kofler, R. (2020). Reconstructing the Invasion Route of the P-Element in Drosophila melanogaster Using Extant Population Samples. Genome Biol Evol 12(11): 2139-2152. PubMed ID: 33210145 >Hsu, S. K., Jaksic, A. M., Nolte, V., Lirakis, M., Kofler, R., Barghi, N., Versace, E. and Schlotterer, C. (2020). Rapid sex-specific adaptation to high temperature in Drosophila. Elife 9. PubMed ID: 32083552 Barghi, N., Tobler, R., Nolte, V., Jaksic, A. M., Mallard, F., Otte, K. A., Dolezal, M., Taus, T., Kofler, R. and Schlotterer, C. (2019). Genetic redundancy fuels polygenic adaptation in Drosophila. PLoS Biol 17(2): e3000128. PubMed ID: 30716062 Duhart, J. M., Baccini, V., Zhang, Y., Machado, D. R. and Koh, K. (2020). Modulation of sleep-courtship balance by nutritional status in Drosophila. Elife 9. PubMed ID: 33084567 Lamaze, A., Jepson, J. E. C., Akpoghiran, O. and Koh, K. (2020). Antagonistic Regulation of Circadian Output and Synaptic Development by JETLAG and the DYSCHRONIC-SLOWPOKE Complex. iScience 23(2): 100845. PubMed ID: 32058958 Lamaze, A., Öztürk-Çolak, A., Fischer, R., Peschel, N., Koh, K. and Jepson, J.E. (2017). Regulation of sleep plasticity by a thermo-sensitive circuit in Drosophila. Sci Rep 7: 40304. PubMed ID: 28084307 Afonso, D. J., Machado, D. R. and Koh, K. (2016). Control of sleep by a network of cell cycle genes. Fly (Austin): [Epub ahead of print]. PubMed ID: 26925838 Afonso, D.J., Liu, D., Machado, D.R., Pan, H., Jepson, J.E., Rogulja, D. and Koh, K. (2015). TARANIS functions with Cyclin A and Cdk1 in a novel arousal center to control sleep in Drosophila. Curr Biol [Epub ahead of print]. PubMed ID: 26096977 Kim, A. Y., Seo, J. B., Kim, W. T., Choi, H. J., Kim, S. Y., Morrow, G., Tanguay, R. M., Steller, H. and Koh, Y. H. (2015). The pathogenic human Torsin A in Drosophila activates the unfolded protein response and increases susceptibility to oxidative stress. BMC Genomics 16: 338. PubMed ID: 25903460 Kim, Y. H., Kwon, D. H., Ahn, H. M., Koh, Y. H. and Lee, S. H. (2014). Induction of soluble AChE expression via alternative splicing by chemical stress in Drosophila melanogaster. Insect Biochem Mol Biol 48: 75-82. PubMed ID: 24637386 Kim, W., Lee, D., Choi, J., Kim, A., Han, S., Park, K., Choi, J., Kim, J., Choi, Y., Lee, S. H. and Koh, Y. H. (2011). Pharmacogenetic regulation of acetylcholinesterase activity in Drosophila reveals the regulatory mechanisms of AChE inhibitors in synaptic plasticity. Neurochem Res 36: 879-893. PubMed ID: 21305389 Giachello, C. N. G., Hunter, I., Pettini, T., Coulson, B., Knufer, A., Cachero, S., Winding, M., Arzan Zarin, A., Kohsaka, H., Fan, Y. N., Nose, A., Landgraf, M. and Baines, R. A. (2022). Electrophysiological validation of monosynaptic connectivity between premotor interneurons and the aCC motoneuron in the Drosophila larval CNS. J Neurosci 42(35): 6724-6738. PubMed ID: 35868863 Matsuo, Y., Nose, A. and Kohsaka, H. (2021). Interspecies variation of larval locomotion kinematics in the genus Drosophila and its relation to habitat temperature. BMC Biol 19(1): 176. PubMed ID: 34470643 Hiramoto, A., Jonaitis, J., Niki, S., Kohsaka, H., Fetter, R. D., Cardona, A., Pulver, S. R. and Nose, A. (2021). Regulation of coordinated muscular relaxation in Drosophila larvae by a pattern-regulating intersegmental circuit. Nat Commun 12(1): 2943. PubMed ID: 34011945 Tajiri, R., Ogawa, N., Fujiwara, H. and Kojima, T. (2017). Mechanical Control of Whole Body Shape by a Single Cuticular Protein Obstructor-E in Drosophila melanogaster. PLoS Genet 13(1): e1006548. PubMed ID: 28076349 Natori, K., Tajiri, R., Furukawa, S. and Kojima, T. (2012). Progressive tarsal patterning in the Drosophila by temporally dynamic regulation of transcription factor genes. Dev Biol 361: 450-462. PubMed ID: 22079694 Miyazono, K., Zhi, Y., Takamura, Y., Nagata, K., Saigo, K., Kojima, T. and Tanokura, M. (2010). Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless. EMBO J 29: 1613-1623. PubMed ID: 20389279 Hartmann, M., Sekelsky, J. and Hatkevich, T. (2019). Meiotic MCM Proteins Promote and Inhibit Crossovers During Meiotic Recombination. Genetics 212(2): 461-468. PubMed ID: 31028111 Kohl, K. P. and Singh, N. D. (2018). Experimental evolution across different thermal regimes yields genetic divergence in recombination fraction but no divergence in temperature associated plastic recombination. Evolution 72(4): 989-999. PubMed ID: 29468654 Hatkevich, T., Kohl, K. P., McMahan, S., Hartmann, M. A., Williams, A. M. and Sekelsky, J. (2017). Bloom Syndrome Helicase Promotes Meiotic Crossover Patterning and Homolog Disjunction. Curr Biol 27(1): 96-102. PubMed ID: 27989672 Jeong, S., Yang, D. S., Hong, Y. G., Mitchell, S. P., Brown, M. P. and Kolodkin, A. L. (2017). Varicose and cheerio collaborate with pebble to mediate semaphorin-1a reverse signaling in Drosophila. Proc Natl Acad Sci U S A 114(39): E8254-e8263. PubMed ID: 28894005 Wu, Z., Andreone, B. J. and Kolodkin, A. L. (2012). The coordinate regulation of sensory afferent CNS targeting and CNS longitudinal tract organization in Drosophila during neural development. J Peripher Nerv Syst 17 Suppl 3: 34-37. PubMed ID: 23279430 Jeong, S., Juhaszova, K. and Kolodkin, A. L. (2012). The Control of Semaphorin-1a-Mediated Reverse Signaling by Opposing Pebble and RhoGAPp190 Functions in Drosophila. Neuron 76: 721-734. PubMed ID: 23177958 Cho, J. Y., Chak, K., Andreone, B. J., Wooley, J. R. and Kolodkin, A. L. (2012). The extracellular matrix proteoglycan perlecan facilitates transmembrane semaphorin-mediated repulsive guidance. Genes Dev 26: 2222-2235. PubMed ID: 23028146 Leushkin, E. V., Bazykin, G. A. and Kondrashov, A. S. (2013). Strong mutational bias towards deletions in the Drosophila melanogaster genome is compensated by selection. Genome Biol Evol. PubMed ID: 23395983 Bazykin, G. A. and Kondrashov, A. S. (2012). Major role of positive selection in the evolution of conservative segments of Drosophila proteins. Proc Biol Sci 279: 3409-3417. PubMed ID: 22673359 Leushkin, E. V., Bazykin, G. A. and Kondrashov, A. S. (2012). Insertions and deletions trigger adaptive walks in Drosophila proteins. Proc Biol Sci 279: 3075-3082. PubMed ID: 22456880 Assis, R. and Kondrashov, A. S. (2012). A strong deletion bias in nonallelic gene conversion. PLoS Genet 8: e1002508. PubMed ID: 22359514 Sanokawa-Akakura, R., Cao, W., Allan, K., Patel, K., Ganesh, A., Heiman, G., Burke, R., Kemp, F. W., Bogden, J. D., Camakaris, J., Birge, R. B. and Konsolaki, M. (2010). Control of Alzheimer's amyloid beta toxicity by the high molecular weight immunophilin FKBP52 and copper homeostasis in Drosophila. PLoS One 5: e8626. PubMed ID: 20084280 van de Hoef, D. L., Hughes, J., Livne-Bar, I., Garza, D., Konsolaki, M. and Boulianne, G. L. (2009). Identifying genes that interact with Drosophila presenilin and amyloid precursor protein. Genesis 47: 246-260. PubMed ID: 19241393 Zanette, R. A. and Kontoyiannis, D. P. (2013). Paradoxical effect to caspofungin in Candida species does not confer survival advantage in a Drosophila model of candidiasis. Virulence 4. PubMed ID: 23863608 Diaz, L., Kontoyiannis, D. P., Panesso, D., Albert, N. D., Singh, K. V., Tran, T. T., Munita, J. M., Murray, B. E. and Arias, C. A. (2013). Dissecting the mechanisms of linezolid resistance in a Drosophila melanogaster infection model of Staphylococcus aureus. J Infect Dis 208: 83-91. PubMed ID: 23547139 Ben-Ami, R., Watson, C. C., Lewis, R. E., Albert, N. D., Arias, C. A., Raad, II and Kontoyiannis, D. P. (2013). Drosophila melanogaster as a model to explore the effects of methicillin-resistant Staphylococcus aureus strain type on virulence and response to linezolid treatment. Microb Pathog 55: 16-20. PubMed ID: 23232438 Tanaka, K., Barmina, O., Thompson, A., Massey, J. H., Kim, B. Y., Suvorov, A. and Kopp, A. (2022). Evolution and development of male-specific leg brushes in Drosophilidae. Dev Genes Evol. PubMed ID: 35939093 Luecke, D., Rice, G. and Kopp, A. (2022). Sex-specific evolution of a Drosophila sensory system via interacting cis- and trans-regulatory changes. Evol Dev 24(1-2): 37-60. PubMed ID: 35239254 Luo, Y., Zhang, Y., Farine, J. P., Ferveur, J. F., Ramirez, S. and Kopp, A. (2019). Evolution of sexually dimorphic pheromone profiles coincides with increased number of male-specific chemosensory organs in Drosophila prolongata. Ecol Evol 9(23): 13608-13618. PubMed ID: 31871670 Luecke, D. M. and Kopp, A. (2019). Sex-specific evolution of relative leg size in Drosophila prolongata results from changes in the intersegmental coordination of tissue growth. Evolution. PubMed ID: 31595502 Rice, G. R., Barmina, O., Luecke, D., Hu, K., Arbeitman, M. and Kopp, A. (2019). Modular tissue-specific regulation of doublesex underpins sexually dimorphic development in Drosophila. Development 146(14). PubMed ID: 31285355 Rice, G., Barmina, O., Hu, K. and Kopp, A. (2018). Evolving doublesex expression correlates with the origin and diversification of male sexual ornaments in the Drosophila immigrans species group. Evol Dev. PubMed ID: 29372584 Yassin, A., Delaney, E. K., Reddiex, A. J., Seher, T. D., Bastide, H., Appleton, N. C., Lack, J. B., David, J. R., Chenoweth, S. F., Pool, J. E. and Kopp, A. (2016). The pdm3 locus is a hotspot for recurrent evolution of female-limited color dimorphism in Drosophila. Curr Biol. PubMed ID: 27546577 Signor, S. A., Liu, Y., Rebeiz, M. and Kopp, A. (2016). Genetic convergence in the evolution of male-specific color patterns in Drosophila. Curr Biol. PubMed ID: 27546578 Atallah, J., Teixeira, L., Salazar, R., Zaragoza, G. and Kopp, A. (2014). The making of a pest: the evolution of a fruit-penetrating ovipositor in Drosophila suzukii and related species. Proc Biol Sci 281: 20132840. PubMed ID: 24573846 Atallah, J., Vurens, G., Mavong, S., Mutti, A., Hoang, D. and Kopp, A. (2013). Sex-specific repression of dachshund is required for Drosophila sex comb development. Dev Biol. PubMed ID: 24361261 Saja, S., Buff, H., Smith, A. C., Williams, T. S. and Korey, C. A. (2010). Identifying cellular pathways modulated by Drosophila palmitoyl-protein thioesterase 1 function. Neurobiol Dis 40: 135-145. PubMed ID: 20206262 Hatori, R., Wood, B. M., Oliveira Barbosa, G. and Kornberg, T. B. (2021). Regulated delivery controls Drosophila Hedgehog, Wingless and Decapentaplegic signaling. Elife 10. PubMed ID: 34292155 Wood, B. M., Baena, V., Huang, H., Jorgens, D. M., Terasaki, M. and Kornberg, T. B. (2021). Cytonemes with complex geometries and composition extend into invaginations of target cells. J Cell Biol 220(5). PubMed ID: 33734293 Ali-Murthy, Z., Fetter, R. D., Wang, W., Yang, B., Royer, L. A. and Kornberg, T. B. (2021). Elimination of nurse cell nuclei that shuttle into oocytes during oogenesis. J Cell Biol 220(7). PubMed ID: 33950159 Zhang, Z., Luo, S., Barbosa, G. O., Bai, M., Kornberg, T. B. and Ma, D. K. (2021). The conserved transmembrane protein TMEM-39 coordinates with COPII to promote collagen secretion and regulate ER stress response. PLoS Genet 17(2): e1009317. PubMed ID: 33524011 Hatori, R. and Kornberg, T. B. (2020). Hedgehog produced by the Drosophila wing imaginal disc induces distinct responses in three target tissues. Development 147(22). PubMed ID: 33028613 Zhang, Z., Bai, M., Barbosa, G. O., Chen, A., Wei, Y., Luo, S., Wang, X., Wang, B., Tsukui, T., Li, H., Sheppard, D., Kornberg, T. B. and Ma, D. K. (2020). Broadly conserved roles of TMEM131 family proteins in intracellular collagen assembly and secretory cargo trafficking. Sci Adv 6(7): eaay7667. PubMed ID: 32095531 Fereres, S., Hatori, R., Hatori, M. and Kornberg, T. B. (2019). Cytoneme-mediated signaling essential for tumorigenesis. PLoS Genet 15(9): e1008415. PubMed ID: 31568500 Huang, H., Liu, S. and Kornberg, T. B. (2019). Glutamate signaling at cytoneme synapses. Science 363(6430): 948-955. PubMed ID: 30819957 Chen, W., Huang, H., Hatori, R. and Kornberg, T. B. (2017). Essential basal cytonemes take up Hedgehog in the Drosophila wing imaginal disc. Development. PubMed ID: 28743798 Kashima, R., Redmond, P. L., Ghatpande, P., Roy, S., Kornberg, T. B., Hanke, T., Knapp, S., Lagna, G. and Hata, A. (2017). Hyperactive locomotion in a Drosophila model is a functional readout for the synaptic abnormalities underlying fragile X syndrome. Sci Signal 10(477). PubMed ID: 28465421 Huang, H. and Kornberg, T. B. (2016). Cells must express components of the planar cell polarity system and extracellular matrix to support cytonemes. Elife 5 [Epub ahead of print]. PubMed ID: 27591355 Thomenius, M., Freel, C. D., Horn, S., Krieser, R., Abdelwahid, E., Cannon, R., Balasundaram, S., White, K. and Kornbluth, S. (2011). Mitochondrial fusion is regulated by Reaper to modulate Drosophila programmed cell death. Cell Death Differ 18: 1640-1650. PubMed ID: 21475305 Yang, C. S., Thomenius, M. J., Gan, E. C., Tang, W., Freel, C. D., Merritt, T. J., Nutt, L. K. and Kornbluth, S. (2010). Metabolic regulation of Drosophila apoptosis through inhibitory phosphorylation of Dronc. EMBO J 29: 3196-3207. PubMed ID: 20700104 Bilousov, O. O., Katanaev, V. L., Demydov, S. V. and Kozeretska, I. A. (2013). The downregulation of the miniature gene does not replicate miniature loss-of-function phenotypes in Drosophila melanogaster wing to the full extent. Tsitol Genet 47: 77-81. PubMed ID: 23745366 Vaiserman, A. M., Zabuga, O. G., Kolyada, A. K., Pisaruk, A. V. and Kozeretska, I. A. (2013). Reciprocal cross differences in Drosophila melanogaster longevity: an evidence for non-genomic effects in heterosis phenomenon? Biogerontology 14: 153-163. PubMed ID: 23529279 Rozhok, A. I., Ievdokymenko, K. S. and Kozeretska, I. A. (2012). On the persistence of P element in cultured lineages of Drosophila melanogaster. Tsitol Genet 46: 55-58. PubMed ID: 23074963 Heiden, S., Siwek, R., Lotz, M. L., Borkowsky, S., Schröter, R., Nedvetsky, P., Rohlmann, A., Missler, M. and Krahn, M. P. (2021). Apical-basal polarity regulators are essential for slit diaphragm assembly and endocytosis in Drosophila nephrocytes. Cell Mol Life Sci. PubMed ID: 33651172 Moschall, R., Rass, M., Rossbach, O., Lehmann, G., Kullmann, L., Eichner, N., Strauss, D., Meister, G., Schneuwly, S., Krahn, M. P. and Medenbach, J. (2018). Drosophila Sister-of-Sex-lethal reinforces a male-specific gene expression pattern by controlling Sex-lethal alternative splicing. Nucleic Acids Res. PubMed ID: 30590805 Kullmann, L. and Krahn, M. P. (2018). Redundant regulation of localization and protein stability of DmPar3. Cell Mol Life Sci. PubMed ID: 29523893 Hochapfel, F., Denk, L., Mendl, G., Schulze, U., Maassen, C., Zaytseva, Y., Pavenstadt, H., Weide, T., Rachel, R., Witzgall, R. and Krahn, M. P. (2017). Distinct functions of Crumbs regulating slit diaphragms and endocytosis in Drosophila nephrocytes. Cell Mol Life Sci. PubMed ID: 28717874 Dogliotti, G., Kullmann, L., Dhumale, P., Thiele, C., Panichkina, O., Mendl, G., Houben, R., Haferkamp, S., Puschel, A. W. and Krahn, M. P. (2017). Membrane-binding and activation of LKB1 by phosphatidic acid is essential for development and tumour suppression. Nat Commun 8: 15747. PubMed ID: 28649994 Koch, L., Feicht, S., Sun, R., Sen, A. and Krahn, M. P. (2016). Domain-specific functions of Stardust in Drosophila embryonic development. R Soc Open Sci 3(11): 160776. PubMed ID: 28018665 Loedige, I., Jakob, L., Treiber, T., Ray, D., Stotz, M., Treiber, N., Hennig, J., Cook, K. B., Morris, Q., Hughes, T. R., Engelmann, J. C., Krahn, M. P. and Meister, G. (2015). The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation. Cell Rep 13(6): 1206-1220. PubMed ID: 26527002 Sen, A., Sun, R. and Krahn, M. P. (2015). Localization and Function of Pals1-associated Tight Junction Protein in Drosophila Is Regulated by Two Distinct Apical Complexes. J Biol Chem 290(21): 13224-13233. PubMed ID: 25847234 Shahab, J., Tiwari, M. D., Honemann-Capito, M., Krahn, M. P. and Wodarz, A. (2015). Bazooka/PAR3 is dispensable for polarity in Drosophila follicular epithelial cells. Biol Open 4(4): 528-541. PubMed ID: 25770183 Klemz, R., Reischl, S., Wallach, T., Witte, N., Jurchott, K., Klemz, S., Lang, V., Lorenzen, S., Knauer, M., Heidenreich, S., Xu, M., Ripperger, J. A., Schupp, M., Stanewsky, R. and Kramer, A. (2017). Reciprocal regulation of carbon monoxide metabolism and the circadian clock. Nat Struct Mol Biol 24(1): 15-22. PubMed ID: 27892932 Lee, E., Jeong, E. H., Jeong, H. J., Yildirim, E., Vanselow, J. T., Ng, F., Liu, Y., Mahesh, G., Kramer, A., Hardin, P. E., Edery, I. and Kim, E. Y. (2014). Phosphorylation of a central clock transcription factor is required for thermal but not photic entrainment. PLoS Genet 10(8): e1004545. PubMed ID: 25121504 Nandi, N., Zaidi, Z., Tracy, C. and Kramer, H. (2022). A phospho-switch at Acinus-Serine(437) controls autophagic responses to Cadmium exposure and neurodegenerative stress. Elife 11. PubMed ID: 35037620 Kurtz, P., Jones, A. E., Tiwari, B., Link, N., Wylie, A., Tracy, C., Kramer, H. and Abrams, J. M. (2019). Drosophila p53 directs non-apoptotic programs in postmitotic tissue. Mol Biol Cell: mbcE18120791. PubMed ID: 30892991 Moehlman, A. T., Casey, A. K., Servage, K., Orth, K. and Kramer, H. (2018). Adaptation to constant light requires Fic-mediated AMPylation of BiP to protect against reversible photoreceptor degeneration. Elife 7. PubMed ID: 30015618 Nandi, N. and Kramer, H. (2018). Cdk5-mediated Acn/Acinus phosphorylation regulates basal autophagy independently of metabolic stress. Autophagy: 1-2. PubMed ID: 29782227 Casey, A. K., Moehlman, A. T., Zhang, J., Servage, K. A., Kramer, H. and Orth, K. (2017). Fic-mediated deAMPylation is not dependent on homo-dimerization and rescues toxic AMPylation in flies. J Biol Chem [Epub ahead of print]. PubMed ID: 29089387 Akbar, M. A., Mandraju, R., Tracy, C., Hu, W., Pasare, C. and Kramer, H. (2016). ARC syndrome-linked Vps33B protein is required for inflammatory endosomal maturation and signal termination. Immunity 45: 267-279. PubMed ID: 27496733 Ham, H., Woolery, A. R., Tracy, C., Stenesen, D., Kramer, H. and Orth, K. (2014). Unfolded protein response-regulated dFic reversibly AMPylates BiP during endoplasmic reticulum homeostasis. J Biol Chem. PubMed ID: 25395623 Nandi, N., Tyra, L. K., Stenesen, D. and Kramer, H. (2014). Acinus integrates AKT1 and subapoptotic caspase activities to regulate basal autophagy. J Cell Biol 207: 253-268. PubMed ID: 25332163 Takats, S., Pircs, K., Nagy, P., Varga, A., Karpati, M., Hegedus, K., Kramer, H., Kovacs, A. L., Sass, M. and Juhasz, G. (2014). Interaction of the HOPS complex with Syntaxin 17 mediates autophagosome clearance in Drosophila. Mol Biol Cell 25: 1338-1354. PubMed ID: 24554766 Kowalewski-Nimmerfall, E., Schahs, P., Maresch, D., Rendic, D., Kramer, H. and Mach, L. (2014). Drosophila melanogaster cellular repressor of E1A-stimulated genes is a lysosomal protein essential for fly development. Biochim Biophys Acta 1843: 2900-2912. PubMed ID: 25173815 Swope, D., Kramer, J., King, T. R., Cheng, Y. S. and Kramer, S. G. (2014). Cdc42 is required in a genetically distinct subset of cardiac cells during drosophila dorsal vessel closure. Dev Biol. PubMed ID: 24949939 Macabenta, F. D., Jensen, A. G., Cheng, Y. S., Kramer, J. J. and Kramer, S. G. (2013). Frazzled/DCC facilitates cardiac cell outgrowth and attachment during Drosophila dorsal vessel formation. Dev Biol 380: 233-242. PubMed ID: 23685255 Soplop, N. H., Cheng, Y. S. and Kramer, S. G. (2012). Roundabout is required in the visceral mesoderm for proper microvillus length in the hindgut epithelium. Dev Dyn 241: 759-769. PubMed ID: 22334475 Sampson, M. M., Myers Gschweng, K. M., Hardcastle, B. J., Bonanno, S. L., Sizemore, T. R., Arnold, R. C., Gao, F., Dacks, A. M., Frye, M. A. and Krantz, D. E. (2020). Serotonergic modulation of visual neurons in Drosophila melanogaster. PLoS Genet 16(8): e1009003. PubMed ID: 32866139 Majdi, S., Berglund, E. C., Dunevall, J., Oleinick, A. I., Amatore, C., Krantz, D. E. and Ewing, A. G. (2015). Electrochemical Measurements of Optogenetically Stimulated Quantal Amine Release from Single Nerve Cell Varicosities in Drosophila Larvae. Angew Chem Int Ed Engl. PubMed ID: 26387683 Martin, C. A., Barajas, A., Lawless, G., Lawal, H. O., Assani, K., Lumintang, Y. P., Nunez, V. and Krantz, D. E. (2014). Synergistic effects on dopamine cell death in a Drosophila model of chronic toxin exposure. Neurotoxicology. PubMed ID: 25160001 Grygoruk, A., Chen, A., Martin, C. A., Lawal, H. O., Fei, H., Gutierrez, G., Biedermann, T., Najibi, R., Hadi, R., Chouhan, A. K., Murphy, N. P., Schweizer, F. E., Macleod, G. T., Maidment, N. T. and Krantz, D. E. (2014). The redistribution of Drosophila vesicular monoamine transporter mutants from synaptic vesicles to large dense-core vesicles impairs amine-dependent behaviors. J Neurosci 34: 6924-6937. PubMed ID: 24828646 Martin, C. A. and Krantz, D. E. (2014). Drosophila melanogaster as a genetic model system to study neurotransmitter transporters. Neurochem Int. PubMed ID: 24704795 Lawal, H. O., Terrell, A., Lam, H. A., Djapri, C., Jang, J., Hadi, R., Roberts, L., Shahi, V., Chou, M. T., Biedermann, T., Huang, B., Lawless, G. M., Maidment, N. T. and Krantz, D. E. (2014). Drosophila modifier screens to identify novel neuropsychiatric drugs including aminergic agents for the possible treatment of Parkinson's disease and depression. Mol Psychiatry 19: 235-242. PubMed ID: 23229049 Wu, T. H., Lu, Y. N., Chuang, C. L., Wu, C. L., Chiang, A. S., Krantz, D. E. and Chang, H. Y. (2013). Loss of vesicular dopamine release precedes tauopathy in degenerative dopaminergic neurons in a Drosophila model expressing human tau. Acta Neuropathol 125: 711-725. PubMed ID: 23494099 Chen, A., Ng, F., Lebestky, T., Grygoruk, A., Djapri, C., Lawal, H. O., Zaveri, H. A., Mehanzel, F., Najibi, R., Seidman, G., Murphy, N. P., Kelly, R. L., Ackerson, L. C., Maidment, N. T., Jackson, F. R. and Krantz, D. E. (2013). Dispensable, redundant, complementary, and cooperative roles of dopamine, octopamine, and serotonin in Drosophila melanogaster. Genetics 193: 159-176. PubMed ID: 23086220 Nikolenko, J. V., Kurshakova, M. M., Krasnov, A. N. and Georgieva, S. G. (2021). MLE Helicase Is a New Participant in the Transcription Regulation of the ftz-f1 Gene Encoding Nuclear Receptor in Higher Eukaryotes. Dokl Biochem Biophys 496(1): 1-4. PubMed ID: 33689064 Fursova, N. A., Mazina, M. Y., Nikolenko, J. V., Vorobyova, N. E. and Krasnov, A. N. (2020). Drosophila Zinc Finger Protein CG9890 Is Colocalized with Chromatin Modifying and Remodeling Complexes on Gene Promoters and Involved in Transcription Regulation. Acta Naturae 12(4): 114-119. PubMed ID: 33456983 Nikolenko, J. V., Kurshakova, M. M. and Krasnov, A. N. (2019). Multifunctional ENY2 Protein Interacts with RNA Helicase MLE. Dokl Biochem Biophys 489(1): 407-410. PubMed ID: 32130612 Chen, F. and Krasnow, M. A. (2014). Progenitor outgrowth from the niche in Drosophila trachea is guided by FGF from decaying branches. Science 343: 186-189. PubMed ID: 24408434 Tan, F. E., Vladar, E. K., Ma, L., Fuentealba, L. C., Hoh, R., Espinoza, F. H., Axelrod, J. D., Alvarez-Buylla, A., Stearns, T., Kintner, C. and Krasnow, M. A. (2013). Myb promotes centriole amplification and later steps of the multiciliogenesis program. Development 140: 4277-4286. PubMed ID: 24048590 Ghabrial, A. S., Levi, B. P. and Krasnow, M. A. (2011). A systematic screen for tube morphogenesis and branching genes in the Drosophila tracheal system. PLoS Genet 7: e1002087. PubMed ID: 21750678 Monyak, R. E., Golbari, N. M., Chan, Y. B., Pranevicius, A., Tang, G., Fernandez, M. P. and Kravitz, E. A. (2021). Masculinized Drosophila females adapt their fighting strategies to their opponent. J Exp Biol. PubMed ID: 33568440 Palavicino-Maggio, C. B., Chan, Y. B., McKellar, C. and Kravitz, E. A. (2019). A small number of cholinergic neurons mediate hyperaggression in female Drosophila. Proc Natl Acad Sci U S A 116(34): 17029-17038. PubMed ID: 31391301 Alekseyenko, O. V., Chan, Y. B., Okaty, B. W., Chang, Y., Dymecki, S. M. and Kravitz, E. A. (2019). Serotonergic modulation of aggression in Drosophila involves GABAergic and cholinergic opposing pathways. Curr Biol. PubMed ID: 31231050 Chowdhury, B., Chan, Y.B. and Kravitz, E.A. (2017). Putative transmembrane transporter modulates higher-level aggression in Drosophila. Proc Natl Acad Sci U S A 114: 2373-2378. PubMed ID: 28193893 Trannoy, S. and Kravitz, E. A. (2016). Strategy changes in subsequent fights as consequences of winning and losing in fruit fly fights. Fly (Austin): [Epub ahead of print]. PubMed ID: 27834611 Trannoy, S., Penn, J., Lucey, K., Popovic, D. and Kravitz, E.A. (2016). Short and long-lasting behavioral consequences of agonistic encounters between male Drosophila melanogaster. Proc Natl Acad Sci U S A [Epub ahead of print]. PubMed ID: 27071097 Alekseyenko, O. V. and Kravitz, E. A. (2014). Serotonin and the search for the anatomical substrate of aggression. Fly (Austin) 8: 200-205. PubMed ID: 25923771 Trannoy, S., Chowdhury, B. and Kravitz, E. A. (2015). A new approach that eliminates handling for studying aggression and the "loser" effect in Drosophila melanogaster. J Vis Exp. PubMed ID: 26780386 Chan, Y. B., Alekseyenko, O. V. and Kravitz, E. A. (2015). Optogenetic Control of Gene Expression in Drosophila. PLoS One 10: e0138181. PubMed ID: 26383635 Trannoy, S. and Kravitz, E. A. (2015). Learning and memory during aggression in Drosophila: handling affects aggression and the formation of a "loser" effect. J Nat Sci 1: e56. PubMed ID: 25789340 Trannoy, S., Chowdhury, B. and Kravitz, E. A. (2015). Handling alters aggression and "loser" effect formation in Drosophila melanogaster. Learn Mem 22: 64-68. PubMed ID: 25593291 Umegawachi, T., Yoshida, H., Koshida, H., Yamada, M., Ohkawa, Y., Sato, T., Suyama, M., Krause, H. M. and Yamaguchi, M. (2017). Control of tissue size and development by a regulatory element in the yorkie 3'UTR. Am J Cancer Res 7(3): 673-687. PubMed ID: 28401020 Lee, D. M., Wilk, R., Hu, J., Krause, H. M. and Harris, T. J. (2015). Germ Cell Segregation from the Drosophila Soma Is Controlled by an Inhibitory Threshold Set by the Arf-GEF Steppke. Genetics. PubMed ID: 25971667 Wilk, R., Hu, J., Krause, H. M. (2013) Spatial Profiling of Nuclear Receptor Transcription Patterns Over the Course of Drosophila Development. G3 (Bethesda). PubMed ID: 23665880 Knox, J., Moyer, K., Yacoub, N., Soldaat, C., Komosa, M., Vassilieva, K., Wilk, R., Hu, J., Vazquez Paz Lde, L., Syed, Q., Krause, H. M., Georgescu, M. and Jacobs, J. R. (2011). Syndecan contributes to heart cell specification and lumen formation during Drosophila cardiogenesis. Dev Biol 356: 279-290. PubMed ID: 21565181 Zou, S., Chang, J., LaFever, L., Tang, W., Johnson, E. L., Hu, J., Wilk, R., Krause, H. M., Drummond-Barbosa, D. and Irusta, P. M. (2011). Identification of dAven, a Drosophila melanogaster ortholog of the cell cycle regulator Aven. Cell Cycle 10: 989-998. PubMed ID: 21368576 Kraut, R. (2011). Roles of sphingolipids in Drosophila development and disease. J Neurochem 116: 764-778. PubMed ID: 21214556 Hortsch, R., Lee, E., Erathodiyil, N., Hebbar, S., Steinert, S., Lee, J. Y., Chua, D. S. and Kraut, R. (2010). Glycolipid trafficking in Drosophila undergoes pathway switching in response to aberrant cholesterol levels. Mol Biol Cell 21: 778-790. PubMed ID: 20053687 Rezaval, C., Pavlou, H. J., Dornan, A. J., Chan, Y. B., Kravitz, E. A. and Goodwin, S. F. (2012). Neural circuitry underlying Drosophila female postmating behavioral responses. Curr Biol 22: 1155-1165. PubMed ID: 22658598 Fernandez, M. P., Chan, Y. B., Yew, J. Y., Billeter, J. C., Dreisewerd, K., Levine, J. D. and Kravitz, E. A. (2010). Pheromonal and behavioral cues trigger male-to-female aggression in Drosophila. PLoS Biol 8: e1000541. PubMed ID: 21124886 Certel, S. J., Leung, A., Lin, C. Y., Perez, P., Chiang, A. S. and Kravitz, E. A. (2010). Octopamine neuromodulatory effects on a social behavior decision-making network in Drosophila males. PLoS One 5: e13248. PubMed ID: 20967276 Jiang, P., Ludwig, M. Z., Kreitman, M. and Reinitz, J. (2015). Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster. Dev Biol [Epub ahead of print]. PubMed ID: 26129990 Jha, A. R., Miles, C. M., Lippert, N. R., Brown, C. D., White, K. P. and Kreitman, M. (2015). Whole genome resequencing of experimental populations reveals polygenic basis of egg size variation in Drosophila melanogaster. Mol Biol Evol. PubMed ID: 26044351 Palsson, A., Wesolowska, N., Reynisdottir, S., Ludwig, M. Z. and Kreitman, M. (2014). Naturally Occurring Deletions of Hunchback Binding Sites in the Even-Skipped Stripe 3+7 Enhancer. PLoS One 9: e91924. PubMed ID: 24786295 Martinez, C., Rest, J. S., Kim, A. R., Ludwig, M., Kreitman, M., White, K. and Reinitz, J. (2014). Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Mol Biol Evol. PubMed ID: 24408913 He, B. Z., Ludwig, M. Z., Dickerson, D. A., Barse, L., Arun, B., Vilhjalmsson, B. J., Park, S. Y., Tamarina, N. A., Selleck, S. B., Wittkopp, P. J., Bell, G. I. and Kreitman, M. (2013). Effect of Genetic Variation in a Drosophila Model of Diabetes-Associated Misfolded Human Proinsulin. Genetics. PubMed ID: 24281155 Park, S. Y., Ludwig, M. Z., Tamarina, N. A., He, B. Z., Carl, S. H., Dickerson, D. A., Barse, L., Arun, B., Williams, C. L., Miles, C. M., Philipson, L. H., Steiner, D. F., Bell, G. I. and Kreitman, M. (2013). Genetic Complexity in a Drosophila Model of Diabetes-Associated Misfolded Human Proinsulin. Genetics. PubMed ID: 24281154 Cheung, D., Miles, C., Kreitman, M. and Ma, J. (2013). Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos. Development. PubMed ID: 24284208 Manu, M., Ludwig, M. Z., Kreitman, M. (2013) Sex-specific Pattern Formation During Early Drosophila Development. Genetics. PubMed ID: 23410834 Sunderhaus, E. R., Law, A. D. and Kretzschmar, D. (2019). ER responses play a key role in Swiss-Cheese/Neuropathy Target Esterase-associated neurodegeneration. Neurobiol Dis: 104520. PubMed ID: 31233884 Cassar, M., Sunderhaus, E., Wentzell, J. S., Kuntz, S., Strauss, R. and Kretzschmar, D. (2018). The PKA-C3 catalytic subunit is required in two pairs of interneurons for successful mating of Drosophila. Sci Rep 8(1): 2458. PubMed ID: 29410515 Sunderhaus, E. R. and Kretzschmar, D. (2016). Mass Histology to Quantify Neurodegeneration in Drosophila. J Vis Exp(118) [Epub ahead of print] PubMed ID: 28060320 Ramaker, J. M., Cargill, R. S., Swanson, T. L., Quirindongo, H., Cassar, M., Kretzschmar, D. and Copenhaver, P. F. (2016). Amyloid precursor proteins are dynamically trafficked and processed during neuronal development. Front Mol Neurosci 9: 130. PubMed ID: 27932950 Cassar, M. and Kretzschmar, D. (2016). Analysis of Amyloid precursor protein function in Drosophila melanogaster. Front Mol Neurosci 9: 61. PubMed ID: 27507933 Blake, M. R., Holbrook, S. D., Kotwica-Rolinska, J., Chow, E. S., Kretzschmar, D. and Giebultowicz, J. M. (2015). Manipulations of amyloid precursor protein cleavage disrupt the circadian clock in aging Drosophila. Neurobiol Dis 77: 117-126. PubMed ID: 25766673 Cook, M., Bolkan, B. J. and Kretzschmar, D. (2014). Increased actin polymerization and stabilization interferes with neuronal function and survival in the AMPKgamma mutant Loechrig. PLoS One 9: e89847. PubMed ID: 24587072 Long, D. M., Blake, M. R., Dutta, S., Holbrook, S. D., Kotwica-Rolinska, J., Kretzschmar, D. and Giebultowicz, J. M. (2014). Relationships between the Circadian System and Alzheimer's Disease-Like Symptoms in Drosophila. PLoS One 9: e106068. PubMed ID: 25171136 Bolkan, B. J. and Kretzschmar, D. (2014). Loss of Tau results in defects in photoreceptor development and progressive neuronal degeneration in Drosophila. Dev Neurobiol. PubMed ID: 24909306 Wentzell, J. S., Cassar, M. and Kretzschmar, D. (2014). Organophosphate-Induced Changes in the PKA Regulatory Function of Swiss Cheese/NTE Lead to Behavioral Deficits and Neurodegeneration. PLoS One 9: e87526. PubMed ID: 24558370 Bolkan, B. J., Triphan, T. and Kretzschmar, D. (2012). beta-secretase cleavage of the fly amyloid precursor protein is required for glial survival. J Neurosci 32: 16181-16192. PubMed ID: 23152602 Davies, L. R., Loeschcke, V., Schou, M. F., Schramm, A. and Kristensen, T. N. (2021). The importance of environmental microbes for Drosophila melanogaster during seasonal macronutrient variability. Sci Rep 11(1): 18850. PubMed ID: 34552121 Rohde, P. D., Jensen, I. R., Sarup, P. M., Orsted, M., Demontis, D., Sorensen, P. and Kristensen, T. N. (2019). Genetic signatures of drug response variability in Drosophila melanogaster. Genetics. PubMed ID: 31455722 Orsted, M., Hoffmann, A. A., Sverrisdottir, E., Nielsen, K. L. and Kristensen, T. N. (2019). Genomic variation predicts adaptive evolutionary responses better than population bottleneck history. PLoS Genet 15(6): e1008205. PubMed ID: 31188830 Orsted, M., Hoffmann, A. A., Rohde, P. D., Sorensen, P. and Kristensen, T. N. (2018). Strong impact of thermal environment on the quantitative genetic basis of a key stress tolerance trait. Heredity (Edinb). PubMed ID: 30050062 Schou, M. F., Loeschcke, V., Bechsgaard, J., Schlotterer, C. and Kristensen, T. N. (2017). Unexpected high genetic diversity in small populations suggests maintenance by associative overdominance. Mol Ecol. PubMed ID: 28746770 Orsted, M., Schou, M. F. and Kristensen, T. N. (2017). Biotic and abiotic factors investigated in two Drosophila species - evidence of both negative and positive effects of interactions on performance. Sci Rep 7: 40132. PubMed ID: 28059144 Schou, M. F., Loeschcke, V. and Kristensen, T. N. (2015). Inbreeding depression across a nutritional stress continuum. Heredity (Edinb) 115: 56-62. PubMed ID: 26059969 Schou, M.F., Loeschcke, V. and Kristensen, T.N. (2015). Strong costs and benefits of winter acclimatization in Drosophila melanogaster. PLoS One 10: e0130307. PubMed ID: 26075607 Jensen, P., Overgaard, J., Loeschcke, V., Schou, M. F., Malte, H. and Kristensen, T. N. (2014). Inbreeding effects on standard metabolic rate investigated at cold, benign and hot temperatures in Drosophila melanogaster. J Insect Physiol. PubMed ID: 24456661 Stone, B., Evans, L., Coleman, J. and Kuebler, D. (2013). Genetic and pharmacological manipulations that alter metabolism suppress seizure-like activity in Drosophila. Brain Res 1496: 94-103. PubMed ID: 23247062 Whelan, J., Burke, B., Rice, A., Tong, M. and Kuebler, D. (2010). Sensitivity to seizure-like activity in Drosophila following acute hypoxia and hypercapnia. Brain Res 1316: 120-128. PubMed ID: 20034480 Teixeira, J. R., Dias, G. B., Svartman, M., Ruiz, A. and Kuhn, G. C. S. (2018). Concurrent Duplication of Drosophila Cid and Cenp-C Genes Resulted in Accelerated Evolution and Male Germline-Biased Expression of the New Copies. J Mol Evol. PubMed ID: 29934734 de Lima, L. G., Svartman, M. and Kuhn, G. C. S. (2017). Dissecting the satellite DNA landscape in three cactophilic Drosophila sequenced genomes. G3 (Bethesda). PubMed ID: 28659292 Dias, G. B., Heringer, P., Svartman, M. and Kuhn, G. C. (2015). Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in alpha- and beta-heterochromatin, satellite DNA emergence, and piRNA expression. Chromosome Res. PubMed ID: 26408292 Dias, G. B., Svartman, M., Delprat, A., Ruiz, A. and Kuhn, G. C. (2014). Tetris is a foldback transposon that provided the building blocks for an emerging satellite DNA of Drosophila virilis. Genome Biol Evol. PubMed ID: 24858539 Kuhn, G. C., Kuttler, H., Moreira-Filho, O. and Heslop-Harrison, J. S. (2012). The 1.688 repetitive DNA of Drosophila: concerted evolution at different genomic scales and association with genes. Mol Biol Evol 29: 7-11. PubMed ID: 21712468 Kuhn, G. C. and Heslop-Harrison, J. S. (2011). Characterization and genomic organization of PERI, a repetitive DNA in the Drosophila buzzatii cluster related to DINE-1 transposable elements and highly abundant in the sex chromosomes. Cytogenet Genome Res 132: 79-88. PubMed ID: 20938165 Renn, S. C., Machado, H. E., Jones, A., Soneji, K., Kulathinal, R. J. and Hofmann, H. A. (2010). Using comparative genomic hybridization to survey genomic sequence divergence across species: a proof-of-concept from Drosophila. BMC Genomics 11: 271. PubMed ID: 20429934 Kulathinal, R. J., Stevison, L. S. and Noor, M. A. (2009). The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing. PLoS Genet 5: e1000550. PubMed ID: 19578407 Hofbauer, H. F., Heier, C., Sen Saji, A. K. and Kuhnlein, R. P. (2020). Lipidome remodeling in aging normal and genetically obese Drosophila males. Insect Biochem Mol Biol: 103498. PubMed ID: 33221388 Hehlert, P., Hofferek, V., Heier, C., Eichmann, T. O., Riedel, D., Rosenberg, J., Takacs, A., Nagy, H. M., Oberer, M., Zimmermann, R. and Kuhnlein, R. P. (2019). The alpha/beta-hydrolase domain-containing 4 and 5 (ABHD4/5)-related phospholipase Pummelig controls energy storage in Drosophila. J Lipid Res. PubMed ID: 31164391 Xu, Y., Borcherding, A. F., Heier, C., Tian, G., Roeder, T. and Kuhnlein, R. P. (2019). Chronic dysfunction of Stromal interaction molecule by pulsed RNAi induction in fat tissue impairs organismal energy homeostasis in Drosophila. Sci Rep 9(1): 6989. PubMed ID: 31061470 Heier, C. and Kuhnlein, R. P. (2018). Triacylglycerol metabolism in Drosophila melanogaster. Genetics 210(4): 1163-1184. PubMed ID: 30523167 Korandova, M., Krucek, T., Szakosova, K., Kodrik, D., Kuhnlein, R. P., Tomaskova, J. and Capkova Frydrychova, R. (2017). Chronic low-dose pro-oxidant treatment stimulates transcriptional activity of telomeric retroelements and increases telomere length in Drosophila. J Insect Physiol. PubMed ID: 29122549 Galikova, M., Klepsatel, P., Munch, J. and Kuhnlein, R. P. (2017). Spastic paraplegia-linked phospholipase PAPLA1 is necessary for development, reproduction, and energy metabolism in Drosophila. Sci Rep 7: 46516. PubMed ID: 28422159 Klepsatel, P., Galikova, M., Xu, Y. and Kuhnlein, R. P. (2016). Thermal stress depletes energy reserves in Drosophila. Sci Rep 6: 33667. PubMed ID: 27641694 Galikova, M., Diesner, M., Klepsatel, P., Hehlert, P., Xu, Y., Bickmeyer, I., Predel, R. and Kuhnlein, R. P. (2015). Energy Homeostasis Control in Drosophila Adipokinetic Hormone Mutants. Genetics. PubMed ID: 26275422 Gáliková, M., Diesner, M., Klepsatel, P., Hehlert, P., Xu, Y., Bickmeyer, I., Predel, R. and Kühnlein, R.P. (2015). Energy homeostasis control in Drosophila Adipokinetic hormone mutants. Genetics [Epub ahead of print]. PubMed ID: 26275422 Ordway, A. J., Teeters, G. M., Weasner, B. M., Weasner, B. P., Policastro, R. and Kumar, J. P. (2021). A multi-gene knockdown approach reveals a new role for Pax6 in controlling organ number in Drosophila. Development 148(9). PubMed ID: 33982759 Baker, L. R., Weasner, B. M., Nagel, A., Neuman, S. D., Bashirullah, A. and Kumar, J. P. (2018). Eyeless/Pax6 initiates eye formation non-autonomously from the peripodial epithelium. Development. PubMed ID: 29980566 Palliyil, S., Zhu, J., Baker, L. R., Neuman, S. D., Bashirullah, A. and Kumar, J. P. (2018). Allocation of distinct organ fates from a precursor field requires a shift in expression and function of gene regulatory networks. PLoS Genet 14(1): e1007185. PubMed ID: 29351292 Zhu, J., Palliyil, S., Ran, C. and Kumar, J. P. (2017). Drosophila Pax6 promotes development of the entire eye-antennal disc, thereby ensuring proper adult head formation. Proc Natl Acad Sci U S A 114(23): 5846-5853. PubMed ID: 28584125 Weasner, B. M., Weasner, B. P., Neuman, S. D., Bashirullah, A. and Kumar, J. P. (2016). Retinal expression of the Drosophila eyes absent gene is controlled by several cooperatively acting cis-regulatory elements. PLoS Genet 12(12): e1006462. PubMed ID: 27930646 Iyer, J., Wang, Q., Le, T., Pizzo, L., Gronke, S., Ambegaokar, S., Imai, Y., Srivastava, A., Llamusi Troisi, B., Mardon, G., Artero, R., Jackson, G. R., Isaacs, A. M., Partridge, L., Kumar, J. P. and Girirajan, S. (2016). Quantitative Assessment of Eye Phenotypes for Functional Genetic Studies Using Drosophila melanogaster. G3 (Bethesda). PubMed ID: 26994292 Spratford, C. M. and Kumar, J. P. (2015). Extramacrochaetae functions in dorsal-ventral patterning of Drosophila imaginal discs. Development 142: 1006-1015. PubMed ID: 25715400 Spratford, C. M. and Kumar, J. P. (2014). Dissection and Immunostaining of Imaginal Discs from Drosophila melanogaster. J Vis Exp. PubMed ID: 25285379 Anderson, A. M., Weasner, B. P., Weasner, B. M. and Kumar, J. P. (2014). The Drosophila Wilms' Tumor 1-Associating Protein (WTAP) Homolog is Required for Eye Development. Dev Biol. PubMed ID: 24690230 Katsura, Y., Stanley, C. E., Jr., Kumar, S. and Nei, M. (2017). The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data. Mol Biol Evol 34(3): 718-723. PubMed ID: 28100791 Chen, Z. X., Golovnina, K., Sultana, H., Kumar, S. and Oliver, B. (2014). Transcriptional effects of gene dose reduction. Biol Sex Differ 5: 5. PubMed ID: 24581086 Montiel, I., Konikoff, C., Braun, B., Packard, M., Gramates, S. L., Sun, Q., Ye, J. and Kumar, S. (2014). myFX: A turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos. Bioinformatics. PubMed ID: 24413523 Zhang, W., Feng, D., Li, R., Chernikov, A., Chrisochoides, N., Osgood, C., Konikoff, C., Newfeld, S., Kumar, S. and Ji, S. (2013). A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis. BMC Bioinformatics 14: 372. PubMed ID: 24373308 Sun, Q., Muckatira, S., Yuan, L., Ji, S., Newfeld, S., Kumar, S. and Ye, J. (2013). Image-level and group-level models for Drosophila gene expression pattern annotation. BMC Bioinformatics 14: 350. PubMed ID: 24299119 Yuan, L., Pan, C., Ji, S., McCutchan, M., Zhou, Z. H., Newfeld, S. J., Kumar, S. and Ye, J. (2013). Automated Annotation of Developmental Stages of Drosophila Embryos in Images Containing Spatial Patterns of Expression. Bioinformatics. PubMed ID: 24300439 Gilbert, J. D., Acquisti, C., Martinson, H. M., Elser, J. J., Kumar, S. and Fagan, W. F. (2013). GRASP Genomic Resource Access for Stoichioproteomics: comparative explorations of the atomic content of 12 Drosophila proteomes. BMC Genomics 14: 599. PubMed ID: 24007337 Yuan, L., Woodard, A., Ji, S., Jiang, Y., Zhou, Z. H., Kumar, S., Ye, J. (2012) Learning sparse representations for fruit-fly gene expression pattern image annotation and retrieval. BMC Bioinformatics 13: 107. PubMed ID: 22621237 Kumar, S., Konikoff, C., Van Emden, B., Busick, C., Davis, K. T., Ji, S., Wu, L. W., Ramos, H., Brody, T., Panchanathan, S., Ye, J., Karr, T. L., Gerold, K., McCutchan, M. and Newfeld, S. J. (2011). FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis. Bioinformatics 27: 3319-3320. PubMed ID: 21994220 Khyati, Malik, I., Agrawal, N. and Kumar, V. (2020). Melatonin and curcumin reestablish disturbed circadian gene expressions and restore locomotion ability and eclosion behavior in Drosophila model of Huntington's disease. Chronobiol Int: 1-18. PubMed ID: 33334207 Raut, S., Mallik, B., Parichha, A., V, A., Sahi, C. and Kumar, V. (2017). RNAi-Mediated Reverse Genetic Screen Identified Drosophila Chaperones Regulating Eye and Neuromuscular Junction Morphology. G3 (Bethesda). PubMed ID: 28500055 Mallik, B., Dwivedi, M. K., Mushtaq, Z., Kumari, M., Verma, P. K. and Kumar, V. (2017). Regulation of neuromuscular junction organization by Rab2 and its effector ICA69 in Drosophila. Development. PubMed ID: 28455372 Mushtaq, Z., Choudhury, S. D., Gangwar, S. K., Orso, G. and Kumar, V. (2016). Human Senataxin Modulates Structural Plasticity of the Neuromuscular Junction in Drosophila through a Neuronally Conserved TGFbeta Signalling Pathway. Neurodegener Dis 16(5-6): 324-336. PubMed ID: 27197982 Choudhury, S. D., Mushtaq, Z., Reddy-Alla, S., Balakrishnan, S. S., Thakur, R. S., Krishnan, K. S., Raghu, P., Ramaswami, M. and Kumar, V. (2016). sigma2-Adaptin Facilitates Basal Synaptic Transmission and Is Required for Regenerating Endo-Exo Cycling Pool Under High-Frequency Nerve Stimulation in Drosophila. Genetics 203(1): 369-385. PubMed ID: 26920756 Yamaguchi, S. T., Tomita, J. and Kume, K. (2022). Insulin signaling in clock neurons regulates sleep in Drosophila. Biochem Biophys Res Commun 591: 44-49. PubMed ID: 34998032 Tomita, J., Ban, G., Kato, Y. S. and Kume, K. (2021). Protocerebral Bridge Neurons That Regulate Sleep in Drosophila melanogaster. Front Neurosci 15: 647117. PubMed ID: 34720844 Hasegawa, T., Tomita, J., Hashimoto, R., Ueno, T., Kume, S. and Kume, K. (2017). Sweetness induces sleep through gustatory signalling independent of nutritional value in a starved fruit fly. Sci Rep 7(1): 14355. PubMed ID: 29084998 Sano, H., Nakamura, A., Texada, M. J., Truman, J. W., Ishimoto, H., Kamikouchi, A., Nibu, Y., Kume, K., Ida, T. and Kojima, M. (2015). The nutrient-responsive hormone CCHamide-2 controls growth by regulating Insulin-like peptides in the brain of Drosophila melanogaster. PLoS Genet 11: e1005209. PubMed ID: 26020940 Tomita, J., Ueno, T., Mitsuyoshi, M., Kume, S. and Kume, K. (2015). The NMDA receptor promotes sleep in the fruit fly, Drosophila melanogaster. PLoS One 10: e0128101. PubMed ID: 26023770 Ueno, T. and Kume, K. (2014). Functional characterization of dopamine transporter in vivo using Drosophila melanogaster behavioral assays. Front Behav Neurosci 8: 303. PubMed ID: 25232310 Ueno, T., et al. (2012). Identification of a dopamine pathway that regulates sleep and arousal in Drosophila. Nat. Neurosci. 15(11): 1516-23. PubMed ID: 23064381 Ueno, T., Masuda, N., Kume, S. and Kume, K. (2012). Dopamine modulates the rest period length without perturbation of its power law distribution in Drosophila melanogaster. PLoS One 7: e32007. PubMed ID: 22359653 Daniele, J. R., Baqri, R. M. and Kunes, S. (2017). Analysis of axonal trafficking via a novel live imaging technique reveals distinct Hedgehog transport kinetics. Biol Open [Epub ahead of print]. PubMed ID: 28298319 Baqri, R. M., Pietron, A. V., Gokhale, R. H., Turner, B. A., Kaguni, L. S., Shingleton, A. W., Kunes, S. and Miller, K. E. (2014). Mitochondrial chaperone TRAP1 activates the mitochondrial UPR and extends healthspan in Drosophila. Mech Ageing Dev. PubMed ID: 25265088 Dearborn, R. E., Jr., Dai, Y., Reed, B., Karian, T., Gray, J. and Kunes, S. (2012). Reph, a regulator of Eph receptor expression in the Drosophila melanogaster optic lobe. PLoS One 7: e37303. PubMed ID: 22615969 Song, E., de Bivort, B., Dan, C. and Kunes, S. (2012). Determinants of the Drosophila odorant receptor pattern. Dev Cell 22: 363-376. PubMed ID: 22340498 Huang, H. R., Chen, Z. J., Kunes, S., Chang, G. D. and Maniatis, T. (2010). Endocytic pathway is required for Drosophila Toll innate immune signaling. Proc Natl Acad Sci U S A 107: 8322-8327. PubMed ID: 20404143 Ming, M., Obata, F., Kuranaga, E. and Miura, M. (2014). Persephone/Spatzle pathogen sensors mediate the activation of Toll receptor signaling in response to endogenous danger signals in apoptosis-deficient Drosophila. J Biol Chem 289(11): 7558-7568. PubMed ID: 24492611 Ihara, R., Matsukawa, K., Nagata, Y., Kunugi, H., Tsuji, S., Chihara, T., Kuranaga, E., Miura, M., Wakabayashi, T., Hashimoto, T. and Iwatsubo, T. (2013). RNA binding mediates neurotoxicity in the transgenic Drosophila model of TDP-43 proteinopathy. Hum Mol Genet 22(22): 4474-4484. PubMed ID: 23804749 Petrignani, B., Rommelaere, S., Hakim-Mishnaevski, K., Masson, F., Ramond, E., Hilu-Dadia, R., Poidevin, M., Kondo, S., Kurant, E. and Lemaitre, B. (2021). A secreted factor NimrodB4 promotes the elimination of apoptotic corpses by phagocytes in Drosophila. EMBO Rep 22(9): e52262. PubMed ID: 34370384 Dabool, L., Hakim-Mishnaevski, K., Juravlev, L., Flint-Brodsly, N., Mandel, S. and Kurant, E. (2020). Drosophila Skp1 Homologue SkpA Plays a Neuroprotective Role in Adult Brain. iScience 23(8): 101375. PubMed ID: 32739834 Hakim-Mishnaevski, K., Flint-Brodsly, N., Shklyar, B., Levy-Adam, F. and Kurant, E. (2019). Glial phagocytic receptors promote neuronal loss in adult Drosophila brain. Cell Rep 29(6): 1438-1448.e1433. PubMed ID: 31693886 Shlyakhover, E., Shklyar, B., Hakim-Mishnaevski, K., Levy-Adam, F. and Kurant, E. (2018). Drosophila GATA factor serpent establishes phagocytic ability of embryonic macrophages. Front Immunol 9: 266. PubMed ID: 29568295 Hilu-Dadia, R., Hakim-Mishnaevski, K., Levy-Adam, F. and Kurant, E. (2018). Draper-mediated JNK signaling is required for glial phagocytosis of apoptotic neurons during Drosophila metamorphosis. Glia [Epub ahead of print]. PubMed ID: 29520845 Shklover, J., Levy-Adam, F. and Kurant, E. (2015). The role of Drosophila TNF Eiger in developmental and damage-induced neuronal apoptosis. FEBS Lett [Epub ahead of print]. PubMed ID: 25754009 Shklover, J., Mishnaevski, K., Levy-Adam, F. and Kurant, E. (2015). JNK pathway activation is able to synchronize neuronal death and glial phagocytosis in Drosophila. Cell Death Dis 6: e1649. PubMed ID: 25695602 Shklyar, B., Levy-Adam, F. and Kurant, E. (2015). Drosophila Drosophila Model for Studying PhagocytosisPhagocytosis Following Neuronal Cell DeathNeuronal Cell Death. Methods Mol Biol 1254: 359-368. PubMed ID: 25431078 Shklyar, B., Sellman, Y., Shklover, J., Mishnaevski, K., Levy-Adam, F. and Kurant, E. (2014). Developmental regulation of glial cell phagocytic function during Drosophila embryogenesis. Dev Biol. PubMed ID: 25046770 Fuse, N., Okamori, C., Okaji, R., Tang, C., Hirai, K. and Kurata, S. (2022). Transcriptome features of innate immune memory in Drosophila. PLoS Genet 18(10): e1010005. PubMed ID: 36252180 Kanoh, H., Iwashita, S., Kuraishi, T., Goto, A., Fuse, N., Ueno, H., Nimura, M., Oyama, T., Tang, C., Watanabe, R., Hori, A., Momiuchi, Y., Ishikawa, H., Suzuki, H., Nabe, K., Takagaki, T., Fukuzaki, M., Tong, L. L., Yamada, S., Oshima, Y., Aigaki, T., Dow, J. A. T., Davies, S. A. and Kurata, S. (2021). cGMP signaling pathway that modulates NF-κB activation in innate immune responses. iScience 24(12): 103473. PubMed ID: 34988396 Kumada, K., Fuse, N., Tamura, T., Okamori, C. and Kurata, S. (2019). HSP70/DNAJA3 chaperone/cochaperone regulates NF-kappaB activity in immune responses. Biochem Biophys Res Commun. PubMed ID: 31005254 Kanoh, H., Kato, H., Suda, Y., Hori, A., Kurata, S. and Kuraishi, T. (2018). Dual comprehensive approach to decipher the Drosophila Toll pathway, ex vivo RNAi screenings and immunoprecipitation-mass spectrometry. Biochem Biophys Res Commun. PubMed ID: 30497778 Masuko, K., Furuhashi, H., Komaba, K., Numao, E., Nakajima, R., Fuse, N. and Kurata, S. (2018). Nuclear Lamin is required for Winged Eye-mediated transdetermination of Drosophila imaginal disc. Genes Cells. PubMed ID: 29968323 Masuko, K., Fuse, N., Komaba, K., Katsuyama, T., Nakajima, R., Furuhashi, H. and Kurata, S. (2018). winged eye induces transdetermination of Drosophila imaginal disc by acting in concert with a histone methyltransferase, Su(var)3-9. Cell Rep 22(1): 206-217. PubMed ID: 29298422 Hori, A., Kurata, S and Kuraishi, T. (2018). Unexpected role of the IMD pathway in Drosophila gut defense against Staphylococcus aureus. Biochem Biophys Res Commun. 495(1): 395-400. PubMed ID: 29108998 Kenmoku, H., Hori, A., Kuraishi, T. and Kurata, S. (2017). A novel mode of induction of the humoral innate immune response in Drosophila larvae. Dis Model Mech 10(3): 271-281. PubMed ID: 28250052 Kenmoku, H., Ishikawa, H., Ote, M., Kuraishi, T. and Kurata, S. (2016). A subset of neurons controls the permeability of the peritrophic matrix and midgut structure in Drosophila adults. J Exp Biol. PubMed ID: 27229474 Ozawa, N., Furuhashi, H., Masuko, K., Numao, E., Makino, T., Yano, T. and Kurata, S. (2016). Organ identity specification factor WGE localizes to the histone locus body and regulates histone expression to ensure genomic stability in Drosophila. Genes Cells 21: 442-456. PubMed ID: 27145109 Copur, O., Gorchakov, A., Finkl, K., Kuroda, M. I. and Muller, J. (2018). Sex-specific phenotypes of histone H4 point mutants establish dosage compensation as the critical function of H4K16 acetylation in Drosophila. Proc Natl Acad Sci U S A. PubMed ID: 30530664 Kang, H., Jung, Y. L., McElroy, K. A., Zee, B. M., Wallace, H. A., Woolnough, J. L., Park, P. J. and Kuroda, M. I. (2017). Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila. Genes Dev 31(19): 1988-2002. PubMed ID: 29070704 McElroy, K. A., Jung, Y. L., Zee, B. M., Wang, C. I., Park, P. J. and Kuroda, M. I. (2017). upSET, the Drosophila homologue of SET3, Is required for viability and the proper balance of active and repressive chromatin marks. G3 (Bethesda). PubMed ID: 28064188 Kuroda, M. I., Hilfiker, A. and Lucchesi, J. C. (2016). Dosage compensation in Drosophila-a model for the coordinate regulation of transcription. Genetics 204: 435-450. PubMed ID: 27729494 Zee, B. M., Alekseyenko, A. A., McElroy, K. A. and Kuroda, M. I. (2016). Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry. Proc Natl Acad Sci U S A 113: 1784-1789. PubMed ID: 26831069 Jung, Y.L., Kang, H., Park, P.J. and Kuroda, M.I. (2016). Correspondence of Drosophila Polycomb Group proteins with broad H3K27me3 silent domains. Fly (Austin) [Epub ahead of print]. PubMed ID: 26940990 Lucchesi, J. C. and Kuroda, M. I. (2015). Dosage Compensation in Drosophila. Cold Spring Harb Perspect Biol 7. PubMed ID: 25934013 Jung, Y. L., Luquette, L. J., Ho, J. W., Ferrari, F., Tolstorukov, M., Minoda, A., Issner, R., Epstein, C. B., Karpen, G. H., Kuroda, M. I. and Park, P. J. (2014). Impact of sequencing depth in ChIP-seq experiments. Nucleic Acids Res 42: e74. PubMed ID: 24598259 Ferrari, F., Alekseyenko, A. A., Park, P. J. and Kuroda, M. I. (2014). Transcriptional control of a whole chromosome: emerging models for dosage compensation. Nat Struct Mol Biol 21: 118-125. PubMed ID: 24500429 McElroy, K. A., Kang, H. and Kuroda, M. I. (2014). Are we there yet? Initial targeting of the Male-Specific Lethal and Polycomb group chromatin complexes in Drosophila. Open Biol 4: 140006. PubMed ID: 24671948 Alekseyenko, A. A., Ellison, C. E., Gorchakov, A. A., Zhou, Q., Kaiser, V. B., Toda, N., Walton, Z., Peng, S., Park, P. J., Bachtrog, D., Kuroda, M. I. (2013) Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes Dev 27: 853-858. PubMed ID: 23630075 É, A. A., Ho, J. W., Peng, S., Gelbart, M., Tolstorukov, M. Y., Plachetka, A., Kharchenko, P. V., Jung, Y. L., Gorchakov, A. A., Larschan, E., Gu, T., Minoda, A., Riddle, N. C., Schwartz, Y. B., Elgin, S. C., Karpen, G. H., Pirrotta, V., Kuroda, M. I. and Park, P. J. (2012). Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context. PLoS Genet 8: e1002646. PubMed ID: 22570616 Wang, C. I., Alekseyenko, A. A., LeRoy, G., Elia, A. E., Gorchakov, A. A., Britton, L. M., Elledge, S. J., Kharchenko, P. V., Garcia, B. A. and Kuroda, M. I. (2013). Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila. Nat Struct Mol Biol 20: 202-209. PubMed ID: 23295261 Riddle, N. C., Jung, Y. L., Gu, T., Alekseyenko, A. A., Asker, D., Gui, H., Kharchenko, P. V., Minoda, A., Plachetka, A., Schwartz, Y. B., Tolstorukov, M. Y., Kuroda, M. I., Pirrotta, V., Karpen, G. H., Park, P. J. and Elgin, S. C. (2012). Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain. PLoS Genet 8: e1002954. PubMed ID: 23028361 Kari, B., Csordas, G., Honti, V., Cinege, G., Williams, M. J., Ando, I. and Kurucz, E. (2016). The raspberry Gene Is Involved in the Regulation of the Cellular Immune Response in Drosophila melanogaster. PLoS One 11: e0150910. PubMed ID: 26942456 Bretscher, A. J., Honti, V., Binggeli, O., Burri, O., Poidevin, M., Kurucz, E., Zsamboki, J., Ando, I. and Lemaitre, B. (2015). The Nimrod transmembrane receptor Eater is required for hemocyte attachment to the sessile compartment in Drosophila melanogaster. Biol Open 4: 355-363. PubMed ID: 25681394 Markus, R., Lerner, Z., Honti, V., Csordas, G., Zsamboki, J., Cinege, G., Parducz, A., Lukacsovich, T., Kurucz, E. and Ando, I. (2015). Multinucleated Giant Hemocytes Are Effector Cells in Cell-Mediated Immune Responses of Drosophila. J Innate Immun 7: 340-353. PubMed ID: 25659341 Csordas, G., Varga, G. I., Honti, V., Jankovics, F., Kurucz, E. and Ando, I. (2014). In vivo immunostaining of hemocyte compartments in Drosophila for live imaging. PLoS One 9: e98191. PubMed ID: 24892745 Maddison, D. C., Alfonso-Nunez, M., Swaih, A. M., Breda, C., Campesan, S., Allcock, N., Straatman-Iwanowska, A., Kyriacou, C. P. and Giorgini, F. (2020). A novel role for kynurenine 3-monooxygenase in mitochondrial dynamics. PLoS Genet 16(11): e1009129. PubMed ID: 33170836 de Azevedo, R. V. M., Hansen, C., Chen, K. F., Rosato, E. and Kyriacou, C. P. (2020). Disrupted Glutamate Signaling in Drosophila Generates Locomotor Rhythms in Constant Light. Front Physiol 11: 145. PubMed ID: 32210832 Nagy, D., Cusumano, P., Andreatta, G., Anduaga, A. M., Hermann-Luibl, C., Reinhard, N., Gesto, J., Wegener, C., Mazzotta, G., Rosato, E., Kyriacou, C. P., Helfrich-Forster, C. and Costa, R. (2019). Peptidergic signaling from clock neurons regulates reproductive dormancy in Drosophila melanogaster. PLoS Genet 15(6): e1008158. PubMed ID: 31194738 Noreen, S., Pegoraro, M., Nouroz, F., Tauber, E. and Kyriacou, C. P. (2018). Interspecific studies of circadian genes period and timeless in Drosophila. Gene [Epub ahead of print]. PubMed ID: 29353056 Zonato, V., Vanin, S., Costa, R., Tauber, E. and Kyriacou, C. P. (2017). Inverse European Latitudinal Cline at the timeless Locus of Drosophila melanogaster Reveals Selection on a Clock Gene: Population Genetics of ls-tim. J Biol Rhythms: 748730417742309. PubMed ID: 29183263 Schiesari, L., Andreatta, G., Kyriacou, C. P., O'Connor, M. B. and Costa, R. (2016). The Insulin-Like Proteins dILPs-2/5 Determine Diapause Inducibility in Drosophila. PLoS One 11: e0163680. PubMed ID: 27689881 Adewoye, A.B., Kyriacou, C.P. and Tauber, E. (2015). Identification and functional analysis of early gene expression induced by circadian light-resetting in Drosophila. BMC Genomics 16: 570. PubMed ID: 26231660 Green, E. W., O'Callaghan, E. K., Hansen, C. N., Bastianello, S., Bhutani, S., Vanin, S., Armstrong, J. D., Costa, R. and Kyriacou, C. P. (2015). Drosophila circadian rhythms in seminatural environments: Summer afternoon component is not an artifact and requires TrpA1 channels. Proc Natl Acad Sci U S A 112: 8702-8707. PubMed ID: 26124142 Pegoraro, M., Picot, E., Hansen, C. N., Kyriacou, C. P., Rosato, E. and Tauber, E. (2015). Gene Expression Associated with Early and Late Chronotypes in Drosophila melanogaster. Front Neurol 6: 100. PubMed ID: 26097463 Montelli, S., Mazzotta, G., Vanin, S., Caccin, L., Corra, S., De Pitta, C., Boothroyd, C., Green, E. W., Kyriacou, C. P. and Costa, R. (2015). period and timeless mRNA Splicing Profiles under Natural Conditions in Drosophila melanogaster. J Biol Rhythms 30: 217-227. PubMed ID: 25994101 Green, E. W., O'Callaghan, E. K., Pegoraro, M., Armstrong, J. D., Costa, R. and Kyriacou, C. P. (2015). Genetic analysis of Drosophila circadian behavior in seminatural conditions. Methods Enzymol 551: 121-133. PubMed ID: 25662454 |