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Gutierrez-Perez, I., Rowley, M. J., Lyu, X., Valadez-Graham, V., Vallejo, D. M., Ballesta-Illan, E., Lopez-Atalaya, J. P., Kremsky, I., Caparros, E., Corces, V. G. and Dominguez, M. (2019). Ecdysone-Induced 3D Chromatin Reorganization Involves Active Enhancers Bound by Pipsqueak and Polycomb. Cell Rep 28(10): 2715-2727 e2715. PubMed ID: 31484080 Bucio-Mendez, A., Cruz-Becerra, G., Valadez-Graham, V., Dinkova, T. D. and Zurita, M. (2019). The Dmp8-Dmp18 bicistron messenger RNA enables unusual translation during cellular stress. J Cell Biochem 120(3): 3887-3897. PubMed ID: 30270456 Valanne, S. (2013) Functional genomic analysis of the Drosophila immune response. Dev Comp Immunol. PubMed ID: 23707784 Sampson, C. J., Valanne, S., Fauvarque, M. O., Hultmark, D., Ramet, M. and Williams, M. J. (2012). The RhoGEF Zizimin-related acts in the Drosophila cellular immune response via the Rho GTPases Rac2 and Cdc42. Dev Comp Immunol 38: 160-168. PubMed ID: 22634526 Vanha-Aho, L. M., Kleino, A., Kaustio, M., Ulvila, J., Wilke, B., Hultmark, D., Valanne, S. and Ramet, M. (2012). Functional characterization of the infection-inducible peptide Edin in Drosophila melanogaster. PLoS One 7: e37153. PubMed ID: 22606343 Gronholm, J., Kaustio, M., Myllymaki, H., Kallio, J., Saarikettu, J., Kronhamn, J., Valanne, S., Silvennoinen, O. and Ramet, M. (2012). Not4 enhances JAK/STAT pathway-dependent gene expression in Drosophila and in human cells. FASEB J 26: 1239-1250. PubMed ID: 22159038 Siva-Jothy, J. A. and Vale, P. F. (2021). Dissecting genetic and sex-specific sources of host heterogeneity in pathogen shedding and spread. PLoS Pathog 17(1): e1009196. PubMed ID: 33465160 White, L. A., Siva-Jothy, J. A., Craft, M. E. and Vale, P. F. (2020). Genotype and sex-based host variation in behaviour and susceptibility drives population disease dynamics. Proc Biol Sci 287(1938): 20201653. PubMed ID: 33171094 Greenan, G. A., Keszthelyi, B., Vale, R. D. and Agard, D. A. (2018). Insights into centriole geometry revealed by cryotomography of doublet and triplet centrioles. Elife 7. PubMed ID: 30080137 Ribeiro, S. A., D'Ambrosio, M. V. and Vale, R. D. (2014). Induction of Focal Adhesions and Motility in Drosophila S2 cells. Mol Biol Cell. PubMed ID: 25273555 Moutinho-Pereira, S., Stuurman, N., Afonso, O., Hornsveld, M., Aguiar, P., Goshima, G., Vale, R. D. and Maiato, H. (2013). Genes involved in centrosome-independent mitotic spindle assembly in Drosophila S2 cells. Proc Natl Acad Sci U S A 110: 19808-19813. PubMed ID: 24255106 D'Ambrosio, M. V. and Vale, R. D. (2010). A whole genome RNAi screen of Drosophila S2 cell spreading performed using automated computational image analysis. J Cell Biol 191: 471-478. PubMed ID: 21041442 Cheong, H. S. J. and VanBerkum, M. F. A. (2017). Long disordered regions of the C-terminal domain of Abelson tyrosine kinase have specific and additive functions in regulation and axon localization. PLoS One 12(12): e0189338. PubMed ID: 29232713 Patel, M.V., Zhu, J.Y., Jiang, Z., Richman, A., VanBerkum, M.F. and Han, Z. (2016). Gia/Mthl5 is an aorta specific GPCR required for Drosophila heart tube morphology and normal pericardial cell positioning. Dev Biol [Epub ahead of print]. PubMed ID: 26994946 Patel, M. V., Hallal, D. A., Jones, J. W., Bronner, D. N., Zein, R., Caravas, J., Husain, Z., Friedrich, M. and Vanberkum, M. F. (2012). Dramatic expansion and developmental expression diversification of the methuselah gene family during recent Drosophila evolution. J Exp Zool B Mol Dev Evol 318: 368-387. PubMed ID: 22711569 Zhou, H., Whitworth, C., Pozmanter, C., Neville, M. C. and Van Doren, M. (2021). Doublesex regulates fruitless expression to promote sexual dimorphism of the gonad stem cell niche. PLoS Genet 17(3): e1009468. PubMed ID: 33788836 Primus, S., Pozmanter, C., Baxter, K. and Van Doren, M. (2019). Tudor-domain containing protein 5-like promotes male sexual identity in the Drosophila germline and is repressed in females by Sex lethal. PLoS Genet 15(7): e1007617. PubMed ID: 31329582 Camara, N., Whitworth, C., Dove, A. and Van Doren, M. (2019). Doublesex controls specification and maintenance of the gonad stem cell niches in Drosophila. Development. PubMed ID: 31043421 Yang, S. Y., Chang, Y. C., Wan, Y. H., Whitworth, C., Baxter, E. M., Primus, S., Pi, H. and Van Doren, M. (2017). Control of a novel spermatocyte-promoting factor by the male germline sex determination factor PHF7 of Drosophila melanogaster. Genetics [Epub ahead of print]. PubMed ID: 28588035 Whitworth, C., Jimenez, E. and Van Doren, M. (2012). Development of sexual dimorphism in the Drosophila testis. Spermatogenesis 2: 129-136. PubMed ID: 23087832 Yang, S. Y., Baxter, E. M. and Van Doren, M. (2012). Phf7 controls male sex determination in the Drosophila germline. Dev Cell 22: 1041-1051. PubMed ID: 22595675 Jemc, J. C., Milutinovich, A. B., Weyers, J. J., Takeda, Y. and Van Doren, M. (2012). raw Functions through JNK signaling and cadherin-based adhesion to regulate Drosophila gonad morphogenesis. Dev Biol 367: 114-125. PubMed ID: 22575490 Van Doren, M. (2011). Development. Determining sexual identity. Science 333: 829-830. PubMed ID: 21836003 Casper, A. L., Baxter, K. and Van Doren, M. (2011). no child left behind encodes a novel chromatin factor required for germline stem cell maintenance in males but not females. Development 138: 3357-3366. PubMed ID: 21752937 Davla, S., Artiushin, G., Li, Y., Chitsaz, D., Li, S., Sehgal, A. and van Meyel, D. J. (2020). AANAT1 functions in astrocytes to regulate sleep homeostasis. Elife 9. PubMed ID: 32955431 Parinejad, N., Peco, E., Ferreira, T., Stacey, S.M. and van Meyel, D.J. (2016). Disruption of an EAAT-mediated chloride channel in a Drosophila model of Ataxia. J Neurosci 36: 7640-7647. PubMed ID: 27445142 Peco, E., Davla, S., Camp, D., Stacey, S., Landgraf, M. and van Meyel, D. (2016). Drosophila astrocytes cover specific territories of CNS neuropil and are instructed to differentiate by Prospero, a key effector of Notch. Development [Epub ahead of print]. PubMed ID: 26893340 Ferreira, T., Ou, Y., Li, S., Giniger, E. and van Meyel, D. J. (2014). Dendrite architecture organized by transcriptional control of the F-actin nucleator Spire. Development 141: 650-660. PubMed ID: 24449841 Stochmanski, S. J., Therrien, M., Laganiere, J., Rochefort, D., Laurent, S., Karemera, L., Gaudet, R., Vyboh, K., Van Meyel, D. J., Di Cristo, G., Dion, P. A., Gaspar, C. and Rouleau, G. A. (2012). Expanded ATXN3 frameshifting events are toxic in Drosophila and mammalian neuron models. Hum Mol Genet 21: 2211-2218. PubMed ID: 22337953 Camp, D., Currie, K., Labbe, A., van Meyel, D. J. and Charron, F. (2010). Ihog and Boi are essential for Hedgehog signaling in Drosophila. Neural Dev 5: 28. PubMed ID: 21044292 Merkling, S. H., Riahi, H., Overheul, G. J., Schenck, A. and van Rij, R. P. (2019). Peroxisome-associated Sgroppino links fat metabolism with survival after RNA virus infection in Drosophila. Sci Rep 9(1): 2065. PubMed ID: 30765784 Joosten, J., Miesen, P., Taskopru, E., Pennings, B., Jansen, P. W., Huynen, M. A., Vermeulen, M. and Van Rij, R. P. (2018). The Tudor protein Veneno assembles the ping-pong amplification complex that produces viral piRNAs in Aedes mosquitoes. Nucleic Acids Res. PubMed ID: 30566680 Palmer, W. H., Joosten, J., Overheul, G. J., Jansen, P. W., Vermeulen, M., Obbard, D. J. and Van Rij, R. P. (2018). Induction and suppression of NF-kappaB signalling by a DNA virus of Drosophila. J Virol. PubMed ID: 30404807 Merkling, S. H., Bronkhorst, A. W., Kramer, J. M., Overheul, G. J., Schenck, A. and Van Rij, R. P. (2015). The epigenetic regulator g9a mediates tolerance to RNA virus infection in Drosophila. PLoS Pathog 11: e1004692. PubMed ID: 25880195 Bronkhorst, A. W., van Cleef, K. W., Venselaar, H. and van Rij, R. P. (2014). A dsRNA-binding protein of a complex invertebrate DNA virus suppresses the Drosophila RNAi response. Nucleic Acids Res [Epub ahead of print]. PubMed ID: 25274730 van Mierlo, J. T., Overheul, G. J., Obadia, B., van Cleef, K. W., Webster, C. L., Saleh, M. C., Obbard, D. J. and van Rij, R. P. (2014). Novel Drosophila Viruses Encode Host-Specific Suppressors of RNAi. PLoS Pathog 10: e1004256. PubMed ID: 25032815 Bronkhorst, A. W., Miesen, P. and van Rij, R. P. (2013). Small RNAs tackle large viruses: RNA interference-based antiviral defense against DNA viruses in insects. Fly (Austin) 7. PubMed ID: 23974177 Bronkhorst, A. W., van Cleef, K. W., Vodovar, N., Ince, I. A., Blanc, H., Vlak, J. M., Saleh, M. C. and van Rij, R. P. (2012). The DNA virus Invertebrate iridescent virus 6 is a target of the Drosophila RNAi machinery. Proc Natl Acad Sci U S A 109: E3604-3613. PubMed ID: 23151511 Merkling, S. H. and van Rij, R. P. (2013). Beyond RNAi: antiviral defense strategies in Drosophila and mosquito. J Insect Physiol 59: 159-170. PubMed ID: 22824741 van Bemmel, J. G., Filion, G. J., Rosado, A., Talhout, W., de Haas, M., van Welsem, T., van Leeuwen, F., van Steensel, B. (2013) A network model of the molecular organization of chromatin in Drosophila. Mol Cell 49: 759-771. PubMed ID: 23438860 Tolhuis, B., Blom, M., Kerkhoven, R. M., Pagie, L., Teunissen, H., Nieuwland, M., Simonis, M., de Laat, W., van Lohuizen, M. and van Steensel, B. (2011). Interactions among Polycomb domains are guided by chromosome architecture. PLoS Genet 7: e1001343. PubMed ID: 21455484 van Bemmel, J. G., Pagie, L., Braunschweig, U., Brugman, W., Meuleman, W., Kerkhoven, R. M. and van Steensel, B. (2010). The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome. PLoS One 5: e15013. PubMed ID: 21124834 Pauli, A., van Bemmel, J. G., Oliveira, R. A., Itoh, T., Shirahige, K., van Steensel, B. and Nasmyth, K. (2010). A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands. Curr Biol 20: 1787-1798. PubMed ID: 20933422 Leung, A., Cohen, D., van Swinderen, B. and Tsuchiya, N. (2021). Integrated information structure collapses with anesthetic loss of conscious arousal in Drosophila melanogaster. PLoS Comput Biol 17(2): e1008722. PubMed ID: 33635858 Tainton-Heap, L. A. L., Kirszenblat, L. C., Notaras, E. T., Grabowska, M. J., Jeans, R., Feng, K., Shaw, P. J. and van Swinderen, B. (2020). A Paradoxical Kind of Sleep in Drosophila melanogaster. Curr Biol. PubMed ID: 33238155 Grabowska, M. J., Jeans, R., Steeves, J. and van Swinderen, B. (2020). Oscillations in the central brain of Drosophila are phase locked to attended visual features. Proc Natl Acad Sci U S A. PubMed ID: 33177231 Karunanithi, S., Lin, Y. Q., Odierna, G. L., Menon, H., Gonzalez, J. M., Neely, G. G., Noakes, P. G., Lavidis, N. 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Innate visual preferences and behavioral flexibility in Drosophila. J Exp Biol. PubMed ID: 30322983 Troup, M., Yap, M. H., Rohrscheib, C., Grabowska, M. J., Ertekin, D., Randeniya, R., Kottler, B., Larkin, A., Munro, K., Shaw, P. J. and van Swinderen, B. (2018). Acute control of the sleep switch in Drosophila reveals a role for gap junctions in regulating behavioral responsiveness. Elife 7. PubMed ID: 30109983 Cohen, D., van Swinderen, B. and Tsuchiya, N. (2018). Isoflurane Impairs Low-Frequency Feedback but Leaves High-Frequency Feedforward Connectivity Intact in the Fly Brain. eNeuro 5(1). PubMed ID: 29541686 McNeill, E. M., Thompson, C., Berke, B., Chou, V. T., Rusch, J., Duckworth, A., DeProto, J., Taylor, A., Gates, J., Gertler, F., Keshishian, H. and Van Vactor, D. (2020). Drosophila enabled promotes synapse morphogenesis and regulates active zone form and function. Neural Dev 15(1): 4. PubMed ID: 32183907 Donelson, N. C., Dixit, R., Pichardo-Casas, I., Chiu, E. Y., Ohman, R. 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An RNA electrophoretic mobility shift and mutational analysis of rnp-4f 5'-UTR intron splicing regulatory proteins in Drosophila reveals a novel new role for a dADAR protein isoform. Gene 511: 161-168. PubMed ID: 23026215 Chen, J., Lakshmi, G. G., Hays, D. L., McDowell, K. M., Ma, E. and Vaughn, J. C. (2009). Spatial and temporal expression of dADAR mRNA and protein isoforms during embryogenesis in Drosophila melanogaster. Differentiation 78: 312-320. PubMed ID: 19720447 Theron, E., Maupetit-Mehouas, S., Pouchin, P., Baudet, L., Brasset, E. and Vaury, C. (2018). The interplay between the Argonaute proteins Piwi and Aub within Drosophila germarium is critical for oogenesis, piRNA biogenesis and TE silencing. Nucleic Acids Res. PubMed ID: 30113668 Dennis, C., Brasset, E., Sarkar, A. and Vaury, C. (2016). Export of piRNA precursors by EJC triggers assembly of cytoplasmic Yb-body in Drosophila. Nat Commun 7: 13739. PubMed ID: 27929060 Homolka, D., Pandey, R. 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This listing of Fly Labs and References is a work in progress. Please contact Tom Brody ([email protected]) with your suggestions or corrections. |