Fly Labs and References

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Daniel Babcock Biological Sciences, Lehigh University, Bethlehem, PA Sidisky, J. M., de Paula Moreira, D., Okumus, M., Caratenuto, R., Drost, C., Connors, B., Hussain, S., Alkhatib, S. and Babcock, D. T. (2023). Genome-wide analysis reveals novel regulators of synaptic maintenance in Drosophila. Genetics 223(4). PubMed ID: 36799927 Davis, J., Kolaski, E. and Babcock, D. T. (2022). Vexed mutations promote degeneration of dopaminergic neurons through excessive activation of the innate immune response. NPJ Parkinsons Dis 8(1): 147. PubMed ID: 36323700 Sidisky, J. M., Weaver, D., Hussain, S., Okumus, M., Caratenuto, R. and Babcock, D. (2021). Mayday sustains trans-synaptic BMP signaling required for synaptic maintenance with age. Elife 10. PubMed ID: 33667157 Sidisky, J. M. and Babcock, D. T. (2020). Visualizing Synaptic Degeneration in Adult Drosophila in Association with Neurodegeneration. J Vis Exp(159). PubMed ID: 32478750 Cunningham, P. C., Waldeck, K., Ganetzky, B. and Babcock, D. T. (2018). Neurodegeneration and locomotor dysfunction in Drosophila scarlet mutants. J Cell Sci 131(18). PubMed ID: 30154211 Jo, J., Im, S. H., Babcock, D. T., Iyer, S. C., Gunawan, F., Cox, D. N. and Galko, M. J. (2017). Drosophila caspase activity is required independently of apoptosis to produce active TNF/Eiger during nociceptive sensitization. Cell Death Dis 8(5): e2786. PubMed ID: 28492538 Erika Bach New York University School of Medicine Herrera, S. C., Sainz de la Maza, D., Grmai, L., Margolis, S., Plessel, R., Burel, M., O'Connor, M., Amoyel, M. and Bach, E. A. (2021). Proliferative stem cells maintain quiescence of their niche by secreting the Activin inhibitor Follistatin. Dev Cell 56(16): 2284-2294.e2286. PubMed ID: 34363758 Grmai, L., Harsh, S., Lu, S., Korman, A., Deb, I. B. and Bach, E. A. (2021). Transcriptomic analysis of feminizing somatic stem cells in the Drosophila testis reveals putative downstream effectors of the transcription factor Chinmo. G3 (Bethesda) 11(4). PubMed ID: 33751104 Sitaram, P., Lu, S., Harsh, S., Herrera, S. C. and Bach, E. A. (2019). Next-generation sequencing reveals increased anti-oxidant response and ecdysone signaling in STAT supercompetitors in Drosophila. G3 (Bethesda). PubMed ID: 31227525 Bailetti, A. A., Negron-Pineiro, L. J., Dhruva, V., Harsh, S., Lu, S., Bosula, A. and Bach, E. A. (2019). Enhancer of Polycomb/Tip60 represses hematological tumor initiation by negatively regulating JAK/STAT pathway activity. Dis Model Mech. PubMed ID: 31072879 Herrera, S. C. and Bach, E. A. (2018). JNK signaling triggers spermatogonial dedifferentiation during chronic stress to maintain the germline stem cell pool in the Drosophila testis. Elife 7. PubMed ID: 29985130 Grmai, L., Hudry, B., Miguel-Aliaga, I. and Bach, E. A. (2018). Chinmo prevents transformer alternative splicing to maintain male sex identity. PLoS Genet 14(2): e1007203. PubMed ID: 29389999 Court, H., Ahearn, I. M., Amoyel, M., Bach, E. A. and Philips, M. R. (2017). Regulation of NOTCH signaling by RAB7 and RAB8 requires carboxyl methylation by ICMT. J Cell Biol 216(12): 4165-4182. PubMed ID: 29051265 Anderson, A. M., Bailetti, A. A., Rodkin, E., De, A. and Bach, E. A. (2017). A genetic screen reveals an unexpected role for Yorkie signaling in JAK/STAT-dependent hematopoietic malignancies in Drosophila melanogaster. G3 (Bethesda). PubMed ID: 28620086 Cook, M. S., Cazin, C., Amoyel, M., Yamamoto, S., Bach, E. and Nystul, T. (2017). Neutral competition for Drosophila follicle and cyst stem cell niches requires vesicle trafficking genes. Genetics [Epub ahead of print]. PubMed ID: 28512187 Amoyel, M., Hillion, K. H., Margolis, S. R. and Bach, E. A. (2016). Somatic stem cell differentiation is regulated by PI3K/Tor signaling in response to local cues. Development 143(21): 3914-3925. PubMed ID: 27633989 Doris Bachtrog Department of Integrative Biology, Center for Theoretical Evolutionary Genomics, Berkeley Wei, K. H., Mai, D., Chatla, K. and Bachtrog, D. (2022). Dynamics and Impacts of Transposable Element Proliferation in the Drosophila nasuta Species Group Radiation. Mol Biol Evol 39(5). PubMed ID: 35485457 Nguyen, A. H., Wang, W., Chong, E., Chatla, K. and Bachtrog, D. (2022). Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila. Genome Res 32(6): 1074-1088. PubMed ID: 35501131 Wang, S., Nalley, M. J., Chatla, K., Aldaimalani, R., MacPherson, A., Wei, K. H., Corbett-Detig, R. B., Mai, D. and Bachtrog, D. (2022). Neo-sex chromosome evolution shapes sex-dependent asymmetrical introgression barrier. Proc Natl Acad Sci U S A 119(19): e2119382119. PubMed ID: 35512091 Wang, S., Nalley, M. J., Chatla, K., Aldaimalani, R., MacPherson, A., Wei, K. H., Corbett-Detig, R. B., Mai, D. and Bachtrog, D. (2022). Neo-sex chromosome evolution shapes sex-dependent asymmetrical introgression barrier. Proc Natl Acad Sci U S A 119(19): e2119382119. PubMed ID: 35512091 Wei, K. H., Chan, C. and Bachtrog, D. (2021). Establishment of H3K9me3-dependent heterochromatin during embryogenesis in Drosophila miranda. Elife 10. PubMed ID: 34128466 Nguyen, A. H. and Bachtrog, D. (2021). Toxic Y chromosome: Increased repeat expression and age-associated heterochromatin loss in male Drosophila with a young Y chromosome. PLoS Genet 17(4): e1009438. PubMed ID: 33886541 Wei, K. H., Gibilisco, L. and Bachtrog, D. (2020). Epigenetic conflict on a degenerating Y chromosome increases mutational burden in Drosophila males. Nat Commun 11(1): 5537. PubMed ID: 33139741 Brown, E. J., Nguyen, A. H. and Bachtrog, D. (2020). The Drosophila Y chromosome affects heterochromatin integrity genome-wide. Mol Biol Evol. PubMed ID: 32211857 Brown, E. J., Nguyen, A. H. and Bachtrog, D. (2020). The Y chromosome may contribute to sex-specific ageing in Drosophila. Nat Ecol Evol. PubMed ID: 32313175 Bracewell, R. and Bachtrog, D. (2020). Complex evolutionary history of the Y chromosome in flies of the Drosophila obscura species group. Genome Biol Evol. PubMed ID: 32176296 Wei, K. H. and Bachtrog, D. (2019). Ancestral male recombination in Drosophila albomicans produced geographically restricted neo-Y chromosome haplotypes varying in age and onset of decay. PLoS Genet 15(11): e1008502. PubMed ID: 31738748 Mai, D., Nalley, M. J. and Bachtrog, D. (2019). Patterns of genomic differentiation in the Drosophila nasuta species complex. Mol Biol Evol. PubMed ID: 31556453 Juan Domingo Bacigalupo Doctorado en Biología Molecular Celular y Neurociencias, Universidad de Chile Delgado, R., Munoz, Y., Pena-Cortes, H., Giavalisco, P. and Bacigalupo, J. (2014). Diacylglycerol Activates the Light-Dependent Channel TRP in the Photosensitive Microvilli of Drosophila melanogaster Photoreceptors. J Neurosci 34: 6679-6686. PubMed ID: 24806693 Munoz, Y., Fuenzalida, K., Bronfman, M., Gatica, A., Sepulveda, M., Bacigalupo, J., Roth, A. D. and Delgado, R. (2013). Fatty acid composition of Drosophila photoreceptor light-sensitive microvilli. Biol Res 46: 289-294. PubMed ID: 24346077 Astorga, G., Hartel, S., Sanhueza, M. and Bacigalupo, J. (2012). TRP, TRPL and cacophony channels mediate Ca2+ influx and exocytosis in photoreceptors axons in Drosophila. PLoS One 7: e44182. PubMed ID: 22952921 Paul Badenhorst Institute of Cancer and Genomic Sciences, Institute of Biomedical Research, University of Birmingham Kwon, S. Y., Jang, B. and Badenhorst, P. (2021). The ISWI chromatin remodelling factor NURF is not required for mitotic male X chromosome organisation. MicroPubl Biol 2021. PubMed ID: 33537560 Kwon, S. Y., Massey, K., Watson, M. A., Hussain, T., Volpe, G., Buckley, C. D., Nicolaou, A. and Badenhorst, P. (2020). Oxidised metabolites of the omega-6 fatty acid linoleic acid activate dFOXO. Life Sci Alliance 3(2). PubMed ID: 31992650 Choudhury, S.R., Singh, A.K., McLeod, T., Blanchette, M., Jang, B., Badenhorst, P., Kanhere, A. and Brogna, S. (2016). Exon Junction Complex proteins bind nascent transcripts independently of pre-mRNA splicing in Drosophila melanogaster. Elife [Epub ahead of print]. PubMed ID: 27879206 Kwon, S. Y., Grisan, V., Jang, B., Herbert, J. and Badenhorst, P. (2016). Genome-wide mapping targets of the metazoan chromatin remodeling factor NURF reveals nucleosome remodeling at enhancers, core promoters and gene insulators. PLoS Genet 12: e1005969. PubMed ID: 27046080 Walker, J., Kwon, S. Y., Badenhorst, P., East, P., McNeill, H. and Svejstrup, J. Q. (2011). Role of elongator subunit Elp3 in Drosophila melanogaster larval development and immunity. Genetics 187: 1067-1075. PubMed ID: 21288872 Stofanko, M., Kwon, S. Y. and Badenhorst, P. (2010). Lineage tracing of lamellocytes demonstrates Drosophila macrophage plasticity. PLoS One 5: e14051. PubMed ID: 21124962 Gyeong Hun Baeg Yong Loo Lin School of Medicine, Singapore Tan, S. W. S., Yip, G. W., Suda, T. and Baeg, G. H. (2017). Small Maf functions in the maintenance of germline stem cells in the Drosophila testis. Redox Biol 15: 125-134. PubMed ID: 29245136 Tan, S. W. S., Lee, Q. Y., Wong, B. S. E., Cai, Y. and Baeg, G. H. (2017). Redox Homeostasis Plays Important Roles in the Maintenance of the Drosophila Testis Germline Stem Cells. Stem Cell Reports 9(1): 342-354. PubMed ID: 28669604 Ng, C. T., Yong, L. Q., Hande, M. P., Ong, C. N., Yu, L. E., Bay, B. H. and Baeg, G. H. (2017). Zinc oxide nanoparticles exhibit cytotoxicity and genotoxicity through oxidative stress responses in human lung fibroblasts and Drosophila melanogaster. Int J Nanomedicine 12: 1621-1637. PubMed ID: 28280330 Ong, C., Lee, Q. Y., Cai, Y., Liu, X., Ding, J., Yung, L. Y., Bay, B. H. and Baeg, G. H. (2016). Silver nanoparticles disrupt germline stem cell maintenance in the Drosophila testis. Sci Rep 6: 20632. PubMed ID: 26847594 Liu, Z., Zhong, G., Chai, P. C., Luo, L., Liu, S., Yang, Y., Baeg, G. H. and Cai, Y. (2015). Coordinated niche-associated signals promote germline homeostasis in the Drosophila ovary. J Cell Biol 211(2): 469-484. PubMed ID: 26504174 Eric Baehrecke University of Massachusetts Medical School Wang, R., Fortier, T. M., Chai, F., Miao, G., Shen, J. L., Restrepo, L. J., DiGiacomo, J. J., Velentzas, P. D., Baehrecke, E. H. (2023). PINK1, Keap1, and Rtnl1 regulate selective clearance of endoplasmic reticulum during development. Cell, 186(19):4172-4188.e4118 PubMed ID: 35523956 Wang, R., Miao, G., Shen, J. L., Fortier, T. M. and Baehrecke, E. H. (2022). ESCRT dysfunction compromises endoplasmic reticulum maturation and autophagosome biogenesis in Drosophila. Curr Biol 32(6): 1262-1274.e1264. PubMed ID: 35134326 Lam, G., Nam, H. J., Velentzas, P. D., Baehrecke, E. H. and Thummel, C. S. (2021). Drosophila E93 promotes adult development and suppresses larval responses to ecdysone during metamorphosis. Dev Biol. PubMed ID: 34648816 Allen, E. A., Amato, C., Fortier, T. M., Velentzas, P., Wood, W. and Baehrecke, E. H. (2020). A conserved myotubularin-related phosphatase regulates autophagy by maintaining autophagic flux. J Cell Biol 219(11). PubMed ID: 32915229 Nandy, A., Lin, L., Velentzas, P. D., Wu, L. P., Baehrecke, E. H. and Silverman, N. (2018). The NF-kappaB factor Relish regulates Atg1 expression and controls autophagy. Cell Rep 25(8): 2110-2120.e2113. PubMed ID: 30463009 Zhao, S., Fortier, T. M. and Baehrecke, E. H. (2018). Autophagy promotes tumor-like stem cell niche occupancy. Curr Biol 28(19): 3056-3064.e3053. PubMed ID: 30270184 Anding, A. L., Wang, C., Chang, T. K., Sliter, D. A., Powers, C. M., Hofmann, K., Youle, R. J. and Baehrecke, E. H. (2018). Vps13D encodes a ubiquitin-binding protein that is required for the regulation of mitochondrial size and clearance. Curr Biol 28(2): 287-295.e286. PubMed ID: 29307555 Lin, L., Rodrigues, F., Kary, C., Contet, A., Logan, M., Baxter, R. H. G., Wood, W. and Baehrecke, E. H. (2017). Complement-Related Regulates Autophagy in Neighboring Cells. Cell 170(1): 158-171.e158. PubMed ID: 28666117 Lee, T. V., Kamber Kaya, H. E., Simin, R., Baehrecke, E. H. and Bergmann, A. (2016). The initiator caspase Dronc is subject of enhanced autophagy upon proteasome impairment in Drosophila. Cell Death Differ. PubMed ID: 27104928 Tracy, K., Velentzas, P. D. and Baehrecke, E. H. (2015). Ral GTPase and the exocyst regulate autophagy in a tissue-specific manner. EMBO Rep [Epub ahead of print]. PubMed ID: 26598552 Zhang, H. and Baehrecke, E. H. (2015). Eaten alive: novel insights into autophagy from multicellular model systems. Trends Cell Biol. PubMed ID: 25862458 Nelson, C. and Baehrecke, E. H. (2014). Eaten to death. FEBS J 281: 5411-5417. PubMed ID: 25323556 Luis Alberto Baena-Lopez Sir William Dunn School of Pathology, University of Oxford Galasso, A., Xu, D. C., Hill, C., Iakovleva, D., Stefana, M. I. and Baena-Lopez, L. A. (2023). Non-apoptotic caspase activation ensures the homeostasis of ovarian somatic stem cells. EMBO Rep: e51716. PubMed ID: 37039000 Xu, D. C., Wang, L., Yamada, K. M. and Baena-Lopez, L. A. (2022). Non-apoptotic activation of Drosophila caspase-2/9 modulates JNK signaling, the tumor microenvironment, and growth of wound-like tumors. Cell Rep 39(3): 110718. PubMed ID: 35443185 Arthurton, L., Nahotko, D. A., Alonso, J., Wendler, F. and Baena-Lopez, L. A. (2020). Non-apoptotic caspase activation preserves Drosophila intestinal progenitor cells in quiescence. EMBO Rep: e48892. PubMed ID: 33135280 Baena-Lopez, L. A., Alexandre, C., Mitchell, A., Pasakarnis, L. and Vincent, J. P. (2013). Accelerated homologous recombination and subsequent genome modification in Drosophila. Development 140(23): 4818-4825. PubMed ID: 24154526 Baena-Lopez, L. A., Alonso, J., Rodriguez, J. and Santaren, J. F. (2008). The expression of heat shock protein HSP60A reveals a dynamic mitochondrial pattern in Drosophila melanogaster embryos. J Proteome Res 7(7): 2780-2788. PubMed ID: 18549261 Baena-Lopez, L. A. and Garcia-Bellido, A. (2006). Control of growth and positional information by the graded vestigial expression pattern in the wing of Drosophila melanogaster. Proc Natl Acad Sci U S A 103(37): 13734-13739. PubMed ID: 16950871 Claudia Bagni Mariano, V., Kanellopoulos, A. K., Ricci, C., Di Marino, D., Borrie, S. C., Dupraz, S., Bradke, F., Achsel, T., Legius, E., Odent, S., Billuart, P., Bienvenu, T., Bagni, C. (2024). Intellectual Disability and Behavioral Deficits Linked to CYFIP1 Missense Variants Disrupting Actin Polymerization. Biological psychiatry, 95(2):161-174 PubMed ID: 37704042 Mariano, V., Kanellopoulos, A. K., Aiello, G., Lo, A. C., Legius, E., Achsel, T. and Bagni, C. (2023). SREBP modulates the NADP(+)/NADPH cycle to control night sleep in Drosophila. Nat Commun 14(1): 763. PubMed ID: 36808152 Mariano, V., Achsel, T., Bagni, C. and Kanellopoulos, A. K. (2020). Modelling Learning and Memory in Drosophila to Understand Intellectual Disabilities. Neuroscience 445: 12-30. PubMed ID: 32730949 Kanellopoulos, A. K., Mariano, V., Spinazzi, M., Woo, Y. J., McLean, C., Pech, U., Li, K. W., Armstrong, J. D., Giangrande, A., Callaerts, P., Smit, A. B., Abrahams, B. S., Fiala, A., Achsel, T. and Bagni, C. (2020). Aralar Sequesters GABA into Hyperactive Mitochondria, Causing Social Behavior Deficits. Cell 180(6): 1178-1197 e1120. PubMed ID: 32200800 Hua Bai Genetics, Development, and Cell Biology, Iowa State University, Ames Bouska, M. J. and Bai, H. (2021). Loxl2 is a mediator of cardiac aging in Drosophila melanogaster; genetically examining the role of aging clock genes. G3 (Bethesda). PubMed ID: 34734976 Bouska, M. J. and Bai, H. (2021). Long noncoding RNA regulation of spermatogenesis via the spectrin cytoskeleton in Drosophila. G3 (Bethesda) 11(5). PubMed ID: 33720346 Birnbaum, A., Sodders, M., Bouska, M., Chang, K., Kang, P., McNeill, E. and Bai, H. (2020). FOXO Regulates Neuromuscular Junction Homeostasis During Drosophila Aging. Front Aging Neurosci 12: 567861. PubMed ID: 33584240 Huang, K., Miao, T., Chang, K., Kim, J., Kang, P., Jiang, Q., Simmonds, A. J., Di Cara, F. and Bai, H. (2020). Impaired peroxisomal import in Drosophila oenocytes causes cardiac dysfunction by inducing upd3 as a peroxikine. Nat Commun 11(1): 2943. PubMed ID: 32523050 Birnbaum, A., Wu, X., Tatar, M., Liu, N. and Bai, H. (2019). Age-Dependent Changes in Transcription Factor FOXO Targeting in Female Drosophila. Front Genet 10: 312. PubMed ID: 31134124 Huang, K., Chen, W., Zhu, F., Li, P. W., Kapahi, P. and Bai, H. (2019). RiboTag translatomic profiling of Drosophila oenocytes under aging and induced oxidative stress. BMC Genomics 20(1): 50. PubMed ID: 30651069 Kang, P., Chang, K., Liu, Y., Bouska, M., Birnbaum, A., Karashchuk, G., Thakore, R., Zheng, W., Post, S., Brent, C. S., Li, S., Tatar, M. and Bai, H. (2017). Drosophila Kruppel homolog 1 represses lipolysis through interaction with dFOXO. Sci Rep 7(1): 16369. PubMed ID: 29180716 Richard Baines University of Manchester Bradlaugh, A. A., Fedele, G., Munro, A. L., Hansen, C. N., Hares, J. M., Patel, S., Kyriacou, C. P., Jones, A. R., Rosato, E. and Baines, R. A. (2023). Essential elements of radical pair magnetosensitivity in Drosophila. Nature 615(7950): 111-116. PubMed ID: 36813962 Dyson, A., Ryan, M., Garg, S., Evans, D. G. and Baines, R. A. (2022). Loss of NF1 in Drosophila Larvae Causes Tactile Hypersensitivity and Impaired Synaptic Transmission at the Neuromuscular Junction. J Neurosci 42(50): 9450-9472. PubMed ID: 36344265 Mulroe, F., Lin, W. H., Mackenzie-Gray Scott, C., Aourz, N., Fan, Y. N., Coutts, G., Parrish, R. R., Smolders, I., Trevelyan, A., Wykes, R., Allan, S., Freeman, S. and Baines, R. A. (2022). Targeting firing rate neuronal homeostasis can prevent seizures. Dis Model Mech. PubMed ID: 36073607 Giachello, C. N. G., Fan, Y. N., Landgraf, M. and Baines, R. A. (2021). Nitric oxide mediates activity-dependent change to synaptic excitation during a critical period in Drosophila. Sci Rep 11(1): 20286. PubMed ID: 34645891 Mituzaite, J., Petersen, R., Claridge-Chang, A. and Baines, R. A. (2021). Characterization of Seizure Induction Methods in Drosophila. eNeuro 8(4). PubMed ID: 34330816 Hodge, S. H., Watts, A., Marley, R., Baines, R. A., Hafen, E. and MacDougall, L. K. (2021). Twitchy, the Drosophila orthologue of the ciliary gating protein FBF1/dyf-19, is required for coordinated locomotion and male fertility. Biol Open 10(8). PubMed ID: 34357392 Hunter, I., Coulson, B., Zarin, A. A. and Baines, R. A. (2021). The Drosophila Larval Locomotor Circuit Provides a Model to Understand Neural Circuit Development and Function. Front Neural Circuits 15: 684969. PubMed ID: 34276315 Vernon, S. W., Goodchild, J. and Baines, R. A. (2019). A poly-glutamine region in the Drosophila VAChT dictates fill-level of cholinergic synaptic vesicles. eNeuro 6(1). PubMed ID: 30847389 Lin, W. H. and Baines, R. A. (2019). Myocyte enhancer factor-2 and p300 interact to regulate expression of the homeostatic regulator Pumilio in Drosophila. Eur J Neurosci. PubMed ID: 30687963 Lin, W. H., Giachello, C. N. and Baines, R. A. (2016). Seizure control through genetic and pharmacological manipulation of Pumilio: a key component of neuronal homeostasis. Dis Model Mech [Epub ahead of print]. PubMed ID: 28067623 Adam Bajgar Laboratory of Molecular Integrative Physiology in Drosophila, Department of Molecular Biology and Genetics, Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic Krejxova, G., Morgantini, C., Zemanova, H., Lauschke, V. M., Kovarova, J., Kubasek, J., Nedbalova, P., Kamps-Hughes, N., Moos, M., Aouadi, M., Dolezal, T., Bajgar, A. (2023). Macrophage-derived insulin antagonist ImpL2 induces lipoprotein mobilization upon bacterial infection. The EMBO journal, 42(23):e114086 PubMed ID: 37807855 Krejcova, G., Danielova, A., Sehadova, H., Dycka, F., Kubasek, J., Moos, M., Bajgar, A. (2024). Macrophages play a nutritive role in post-metamorphic maturation in Drosophila. Development, 151(7) PubMed ID: 31609200 Chris Bakal Institute of Cancer Research, Chester Beatty Laboratories, London Sailem, H., Bousgouni, V., Cooper, S. and Bakal, C. (2014). Cross-talk between Rho and Rac GTPases drives deterministic exploration of cellular shape space and morphological heterogeneity. Open Biol 4: 130132. PubMed ID: 24451547 Yin, Z., Sadok, A., Sailem, H., McCarthy, A., Xia, X., Li, F., Garcia, M. A., Evans, L., Barr, A. R., Perrimon, N., Marshall, C. J., Wong, S. T. and Bakal, C. (2013). A screen for morphological complexity identifies regulators of switch-like transitions between discrete cell shapes. Nat Cell Biol. PubMed ID: 23748611 Garcia, M. A., Alvarez, M. S., Sailem, H., Bousgouni, V., Sero, J. and Bakal, C. (2012). Differential RNAi screening provides insights into the rewiring of signalling networks during oxidative stress. Mol Biosyst 8: 2605-2613. PubMed ID: 22790786 Bakal, C. (2011). Drosophila RNAi screening in a postgenomic world. Brief Funct Genomics 10: 197-205. PubMed ID: 21752787 Bruce Baker HHNI, Janelia Farm Chen, D., Sitaraman, D., Chen, N., Jin, X., Han, C., Chen, J., Sun, M., Baker, B. S., Nitabach, M. N. and Pan, Y. (2017). Genetic and neuronal mechanisms governing the sex-specific interaction between sleep and sexual behaviors in Drosophila. Nat Commun 8(1): 154. PubMed ID: 28754889 Montague, S. A. and Baker, B. S. (2016). Memory elicited by courtship conditioning requires mushroom body neuronal subsets similar to those utilized in appetitive memory. PLoS One 11: e0164516. PubMed ID: 27764141 Meissner, G. W., Luo, S. D., Dias, B. G., Texada, M. J. and Baker, B. S. (2016). Sex-specific regulation of Lgr3 in Drosophila neurons. Proc Natl Acad Sci U S A. PubMed ID: 26884206 Zhou, C., Franconville, R., Vaughan, A. G., Robinett, C. C., Jayaraman, V. and Baker, B. S. (2015). Central neural circuitry mediating courtship song perception in male Drosophila. Elife 4. PubMed ID: 26390382 Luo, S. D. and Baker, B. S. (2015). Constraints on the evolution of a doublesex target gene arising from doublesex's pleiotropic deployment. Proc Natl Acad Sci U S A. PubMed ID: 25675536 Vaughan, A. G., Zhou, C., Manoli, D. S. and Baker, B. S. (2014). Neural Pathways for the Detection and Discrimination of Conspecific Song in D. melanogaster. Curr Biol. PubMed ID: 24794294 Tran, D. H., Meissner, G. W., French, R. L. and Baker, B. S. (2014). A small subset of fruitless subesophageal neurons modulate early courtship in Drosophila. PLoS One 9: e95472. PubMed ID: 24740138 Pan, Y. and Baker, B. S. (2014). Genetic identification and separation of innate and experience-dependent courtship behaviors in Drosophila. Cell 156: 236-248. PubMed ID: 24439379 Fan, P., Manoli, D. S., Ahmed, O. M., Chen, Y., Agarwal, N., Kwong, S., Cai, A. G., Neitz, J., Renslo, A., Baker, B. S. and Shah, N. M. (2013). Genetic and Neural Mechanisms that Inhibit Drosophila from Mating with Other Species. Cell 154: 89-102. PubMed ID: 23810192 Mellert, D. J., Robinett, C. C. and Baker, B. S. (2012). doublesex Functions Early and Late in Gustatory Sense Organ Development. PLoS One 7: e51489. PubMed ID: 23240029 Keith Baker Department of Biochemistry and Molecular Biology, Virginia Commonwealth University, Richmond Padmanabha, D. and Baker, K. D. (2014). Drosophila gains traction as a repurposed tool to investigate metabolism. Trends Endocrinol Metab. PubMed ID: 24768030 Li, Y., Padmanabha, D., Gentile, L. B., Dumur, C. I., Beckstead, R. B., Baker, K. D. (2013) HIF- and Non-HIF-Regulated Hypoxic Responses Require the Estrogen-Related Receptor in Drosophila melanogaster. PLoS Genet 9: e1003230. PubMed ID: 23382692 Tennessen, J. M., Baker, K. D., Lam, G., Evans, J. and Thummel, C. S. (2011). The Drosophila estrogen-related receptor directs a metabolic switch that supports developmental growth. Cell Metab 13: 139-148. PubMed ID: 21284981 Nick Baker Albert Einstein College of Medicine, Bronx Kiparaki, M. and Baker, N. E. (2023). Ribosomal protein mutations and cell competition: autonomous and nonautonomous effects on a stress response. Genetics 224(3). PubMed ID: 37267156 Kumar, A. and Baker, N. E. (2022). The CRL4 E3 ligase Mahjong/DCAF1 controls cell competition through the transcription factor Xrp1, independently of polarity genes. Development 149(22). PubMed ID: 36278853 Ji, Z., Chuen, J., Kiparaki, M. and Baker, N. (2021). Cell competition removes segmental aneuploid cells from Drosophila imaginal disc-derived tissues based on ribosomal protein gene dose. Elife 10. PubMed ID: 33847264 Quiquand, M., Rimesso, G., Qiao, N., Suo, S., Zhao, C., Slattery, M., White, K. P., Han, J. J. and Baker, N. E. (2021). New regulators of Drosophila eye development identified from temporal transcriptome changes. Genetics. PubMed ID: 33681970 Blanco, J., Cooper, J. C. and Baker, N. E. (2020). Roles of C/EBP class bZip proteins in the growth and cell competition of Rp ('Minute') mutants in Drosophila. Elife 9. PubMed ID: 31909714 Ji, Z., Kiparaki, M., Folgado, V., Kumar, A., Blanco, J., Rimesso, G., Chuen, J., Liu, Y., Zheng, D. and Baker, N. E. 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PubMed ID: 31387877

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