abdominal-A

REFERENCES

Abzhanov, A. and Kaufman, T. C. (2000). Crustacean (malacostracan) Hox genes and the evolution of the arthropod trunk. Development 127: 2239-2249. 10804167

Agger, K., Cloos, P. A., Christensen, J., Pasini, D., Rose, S., Rappsilber, J., Issaeva, I., Canaani, E., Salcini, A. E. and Helin, K. (2007). UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development. Nature 449: 731-734. PubMed Citation: 17713478

Ahmad, K. and Henikoff, S. (2002). The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9: 1191-1200. PubMed Citation: 12086617

Ahn, J. H., et al. (2010). Drosophila castor is regulated negatively by the Ubx and abdA genes, but positively by the AbdB gene. Int. J. Dev. Biol. 54(8-9): 1251-8. PubMed Citation: 20563987

Alexandre, C. and Vincent, J. P. (2003). Requirements for transcriptional repression and activation by Engrailed in Drosophila embryos. Development 130: 729-739. 12506003

Ambros, V. and Horvitz, H. R. (1984). Heterochronic mutants of the nematode Caenorhabditis elegans. Science 226: 409-416. PubMed Citation: 6494891

Andrew, D. J., et. al. (1994). Setting limits on homeotic gene function: restraint of Sex combs reduced activity by teashirt and other homeotic genes. EMBO J. 13: 1132-44. PubMed Citation: 7907545

Appel, B. and Sakonju, S. (1993). Cell-type-specific mechanisms of transcriptional repression by the homeotic gene products UBX and ABD-A in Drosophila embryos. EMBO J 12: 1099-1109. PubMed Citation: 8096172

Averof, M. and Patel, N. H. (1997). Crustacean appendage evolution associated with changes in Hox gene expession. Nature 388: 682-686. PubMed Citation: 9262403

Azpiazu, N. and Morata G. (1998). Functional and regulatory interactions between hox and extradenticle genes. Genes Dev. 12(2): 261-273. PubMed Citation: 9436985

Bae, E., Calhoun, V. C., Levine, M., Lewis, E. B. and Drewell, R. A. (2002). Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex. Proc, Natl. Acad. Sci. 99(26): 16847-52. 12481037

Banreti, A., Hudry, B., Sass, M., Saurin, A. J. and Graba, Y. (2013). Hox proteins mediate developmental and environmental control of autophagy. Dev Cell 28(1):56-69. PubMed ID: 24389064

Beisel, C., et al. (2007). Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins. Proc. Natl. Acad. Sci. 104(42): 16615-16620. Medline abstract: 17921257

Bel, S., et al. (1998). Genetic interactions and dosage effects of Polycomb group genes in mice. Development 125(18): 3543-3551. PubMed Citation: 9716520

Bello, B. C., Hirth, F. and Gould, A. C. (2003). A pulse of the Drosophila Hox protein Abdominal-A schedules the end of neural proliferation via neuroblast apoptosis. Neuron 37: 209-219. 12546817

Bender, W. and Fitzgerald, D. P. (2002). Transcription activates repressed domains in the Drosophila bithorax complex. Development 129: 4923-4930. 12397101

Bender, W. and Hudson, A. (2000). P element homing to the Drosophila bithorax complex. Development 127: 3981-3992. PubMed Citation: 10952896

Bender, W. (2008). MicroRNAs in the Drosophila bithorax complex. Genes Dev. 22: 14-19. PubMed citation: 18172161

Berger, C., Pallavi, S. K., Prasad, M., Shashidhara, L. S. and Technau, G. M. (2005). A critical role for cyclin E in cell fate determination in the central nervous system of Drosophila melanogaster. Nat. Cell Biol. 7(1): 56-62. Medline abstract: 15580266

Bilder, D., Graba, Y. and Scott, M. (1998). Wnt and TGFbeta signals subdivide the AbdA hox domain during Drosophila mesoderm patterning. Development 125(9): 1781-1790. Medline abstract: 9521915

Bilder, D. and Scott, M. P. (1998b). Hedgehog and Wingless induce metameric pattern in the Drosophila visceral mesoderm. Dev. Biol. 201(1): 43-56. PubMed Citation: 9733572

Bowman, S. K., Deaton, A. M., Domingues, H., Wang, P. I., Sadreyev, R. I., Kingston, R. E., Bender, W. (2014) H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex. Elife (Cambridge): e02833. PubMed ID: 25082344

Boyle, M. and DiNardo, S. (1995). Specification, migration and assembly of the somatic cells of the Drosophila gonad. Development 121: 1815-25. PubMed Citation: 7600996

Boyle, M., Bonini, N. and DiNardo, S. (1997). Expression and function of clift in the development of somatic gonadal precursors within the Drosophila mesoderm. Development 124: 971-982. PubMed Citation: 9056773

Breen, T. R. and Harte, P. J. (1993). Trithorax regulates multiple homeotic genes in the bithorax and Antennapedia complexes and exerts different tissue-specific, parasegment-specific and promoter-specific effects on each. Development 117: 119-34. PubMed Citation: 7900984

Brodu, V., Elstob, P. R. and Gould, A. P. (2002). abdominal A specifies one cell type in Drosophila by regulating one principal target gene. Development 129: 2957-2963. 12050142

Broihier, H. T., et al. (1998). zfh-1 is required for germ cell migration and gonadal mesoderm development in Drosophila. Development 125(4): 655-666. PubMed Citation: 9435286

Busturia, A. et al. (1989). Genetic structure of the abd-A gene of Drosophila. Development 107: 575-83. PubMed Citation: 2575516

Camino, E. M., Butts, J. C., Ordway, A., Vellky, J. E., Rebeiz, M. and Williams, T. M. (2015). The evolutionary origination and diversification of a dimorphic gene regulatory network through parallel innovations in cis and trans. PLoS Genet 11: e1005136. PubMed ID: 25835988

Capovilla, M. and Botas, J. (1998). Functional dominance among Hox genes: repression dominates activation in the regulation of dpp. Development 125: 4949-4957. PubMed Citation: 9811579

Casares, F. and Sanchez-Herrero, E. (1995). Regulation of the infraabdominal regions of the bithorax complex of Drosophila by gap genes. Development 121: 1855-1866. PubMed Citation: 7600999

Casares, F., Calleja, M. and Sánchez-Herrero, E. (1996). Functional similarity in appendage specification by the Ultrabithorax and abdominal-A Drosophila HOX genes. EMBO J. 15: 3934-42. PubMed Citation: 8670898

Casares, F., et al. (1997). The genital disc of Drosophila melanogaster. I. Segmental and compartmental organization. Dev. Genes Evol. 207: 216-228

Castelli-Gair, J., et al. (1994). Dissecting the temporal requirements for homeotic gene function. Development 120: 1983-1995. PubMed Citation: 7925003

Cenci, C. and Gould, A. P. (2005). Drosophila Grainyhead specifies late programmes of neural proliferation by regulating the mitotic activity and Hox-dependent apoptosis of neuroblasts. Development 132(17): 3835-45. 16049114

Charite, J., et al. (1998). Transducing positional information to the Hox genes: critical interaction of cdx gene products with position-sensitive regulatory elements. Development 125(22): 4349-4358

Chauvet, S., et al. (2000). Distinct Hox protein sequences determine specificity in different tissues. Proc. Natl. Acad. Sci. 97: 4064-4069. Medline abstract: 10737765

Chen, Y., et al. (1998). A genetic screen for modifiers of Drosophila decapentaplegic signaling identifies mutations in punt, Mothers against dpp and the BMP-7 homologue, 60A. Development 125(9): 1759-1768

Chiang, A., et al. (1995). Discrete Polycomb-binding sites in each parasegmental domain of the bithorax complex. Development 121: 1681-1689

Chiang, C. and Beachy, C. A. (1995a). Expression of a novel Toll-like gene spans the parasegment boundary and contributes to hedgehog function in the adult eye of Drosophila. Mech. Dev. 47(3): 225-239

Chiang, C., Young, K. E. and Beachy, P. A. (1995b). Control of Drosophila tracheal branching by the novel homeodomain gene unplugged, a regulatory target for genes of the bithorax complex. Development 121: 3901-3912

Cimbora, D. M. and Sakonju, S. (1995). Drosophila midgut morphogenesis requires the function of the segmentation gene odd-paired. Dev. Biol. 169: 580-595. PubMed Citation: 7781900

Cobb, J. and Duboule, D. (2005). Comparative analysis of genes downstream of the Hoxd cluster in developing digits and external genitalia. Development 132(13): 3055-67. 1594418

Cumberledge, S., Szabad, J. and Sakonju, S. (1992). Gonad formation and development requires the abd-A domain of the bithorax complex in Drosophila melanogaster. Development 115: 395-402. PubMed Citation: 1358590

Duboule, D. (1994). Guidebook to Homeobox Genes. Oxford U. Press, New York. pp. 78-80

Duluc, I., et al. (1997). Changing intestinal connective tissue interactions alters homeobox gene expression in epithelial cells. J. Cell Sci. 110: 1317-1324

Di Stefano, L., Ji, J. Y., Moon, N. S., Herr, A. and Dyson, N. (2007). Mutation of Drosophila Lsd1 disrupts H3-K4 methylation, resulting in tissue-specific defects during development. Curr. Biol. 17(9): 808-12. Medline abstract: 17462898

Enriquez, J., et al. (2010). Multi-step control of muscle diversity by Hox proteins in the Drosophila embryo. Development 137(3): 457-66. PubMed Citation: 20056681

Ensini, M., et al. (1998). The control of rostrocaudal pattern in the developing spinal cord: specification of motor neuron subtype identity is initiated by signals from paraxial mesoderm. Development 125: 969-982. PubMed Citation: 9463344

Ernst, P., Wang, J., Huang, M., Goodman, R. H. and Korsmeyer, S. J. (2001). MLL and CREB bind cooperatively to the nuclear coactivator CREB-binding protein. Mol. Cell. Biol. 21: 2249-2258. PubMed Citation: 11259575

Faucheux, M., et al. (2003). batman interacts with Polycomb and trithorax group genes and encodes a BTB/POZ protein that is included in a complex containing GAGA factor. Molec. Cell. Bio. 23: 1181-1195. 12556479

Foronda, D., Estrada, B., de Navas, L. and Sanchez-Herrero, E. (2006). Requirement of Abdominal-A and Abdominal-B in the developing genitalia of Drosophila breaks the posterior downregulation rule. Development 133(1): 117-27. 16319117

Fujimura, Y., et al. (2006). Distinct roles of Polycomb group gene products in transcriptionally repressed and active domains of Hoxb8. Development 133: 2371-2381. Medline abstract: 16687444

Gaunt, S. J., et al. (1999). Evidence that Hoxa expression domains are evolutionarily transposed in spinal ganglia, and are established by forward spreading in paraxial mesoderm. Mech. Dev. 82(1-2): 109-118

Gebelein, B., McKay, D. J. and Mann, R. S. (2004). Direct integration of Hox and segmentation gene inputs during Drosophila development. Nature 431: 653-659. PubMed Citation: 15470419

Gligorov, D., Sitnik, J. L., Maeda, R. K., Wolfner, M. F. and Karch, F. (2013). A novel function for the Hox gene Abd-B in the male accessory gland regulates the long-term female post-mating response in Drosophila. PLoS Genet 9: e1003395. PubMed ID: 23555301

Godwin, A. R. and Capecchi, M. R. (1998). Hoxc13 mutant mice lack external hair. Genes Dev. 12(1): 11-20

Gould, A. P., and White, R. A. H. (1992). Connectin, a target of hemeotic gene control in Drosophila. Development 116: 1163-74

Graba, Y., et al. (1992). Homeotic control in Drosophila; the scabrous gene is an in vivo target of Ultrabithorax proteins. EMBO J 11: 3375-84

Greig, S. and Akam, M. (1993). Homeotic genes autonomously specify one aspect of pattern in the Drosophila mesoderm. Nature 362: 630-2

Grienenberger, A., et al. (2003). Tgfß signaling acts on a Hox response element to confer specificity and diversity to Hox protein function. Development 130: 5445-5455. 14507783

Gutzwiller, L. M., et al. (2010). Proneural and abdominal Hox inputs synergize to promote sensory organ formation in the Drosophila abdomen. Dev. Biol. 348(2): 231-43. PubMed Citation: 20875816

Hendrickson, J. E. and Sakonju, S. (1995). Cis and trans interactions between the iab regulatory regions and abdominal-A and Abdominal-B in Drosophila melanogaster. Genetics 139: 835-848

Heuer, J. G., Li, K and Kaufman, T. C. (1995). The Drosophila homeotic target gene centrosomin (cnn) encodes a novel centrosomal protein with leucine zippers and maps to a genomic region required for midgut morphogenesis. Development 121: 3861-3876

Hirth, F., Hartmann, B. and Reichert, H. (1998). Homeotic gene action in embryonic brain development of Drosophila. Development 125: 1579-1589. PubMed ID: 9521896

Hittinger, C. T., Stern, D. L. and Carroll, S. B. (2005). Pleiotropic functions of a conserved insect-specific Hox peptide motif. Development 132(23): 5261-70. 16267091

Hogga, I. and Karch, F. (2002). Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing. Development 129: 4915-4922. 12397100

Hui, J. H., Marco, A., Hunt, S., Melling, J., Griffiths-Jones, S. and Ronshaugen, M. (2013). Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Res 41: 3352-3361. PubMed ID: 23335784

Isaacs, H. V., Pownall, M. E. and Slack, J. M. (1998). Regulation of Hox gene expression and posterior development by the Xenopus caudal homologue Xcad3. EMBO J. 17(12): 3413-3427

Jijakli, H. and Ghysen, A. (1992). Segmental determination in Drosophila central nervous system: analysis of the abdominal-A region of the bithorax complex. Int J Dev Biol 36: 93-9

Johnson, F. B., Parker, E. and Krasnow, M. A. (1995). Extradenticle protein is a selective cofactor for the Drosophila homeotics: role of the homeodomain and YPWM amino acid motif in the interaction. Proc Natl Acad Sci 92: 739-743

Joshi, R., Sun, L. and Mann, R. (2010). Dissecting the functional specificities of two Hox proteins. Genes Dev 24: 1533-1545. PubMed Citation: 20634319

Kang, S. Y., Kim, S. N., Kim, S. H. and Jeon, S. H. (2006). Temporal and spatial expression of homeotic genes is important for segment-specific neuroblast 6-4 lineage formation in Drosophila. Mol. Cells 21(3): 436-42. Medline abstract: 16819308

Kannan, R., Berger, C., Myneni, S., Technau, G. M. and Shashidhara, L. S. (2010). Abdominal-A mediated repression of Cyclin E expression during cell-fate specification in the Drosophila central nervous system. Mech. Dev. 127(1-2): 137-45. PubMed Citation: 19799999

Kanzler, B., et al. (1997). CHOXC-8 and CHOXD-13 expression in embryonic chick skin and cutaneous appendage specification. Dev. Dyn. 210(3): 274-287

Karch, F., Bender W. and Weiffenbach, B. (1990). abd-A expression in Drosophila embryos. Genes Dev 4: 1573-87. 1979297

Kehle, J., et al. (1998). dMi-2, a Hunchback-interacting protein that functions in Polycomb repression. Science 282(5395): 1897-900. PubMed Citation: 9836641

Kopp, A., and Duncan, I. (2002). Anteroposterior patterning in adult abdominal segments of Drosophila. Dev. Biol. 242: 15-30. PubMed Citation: 11795937

Kurant, E., et al. (1998). dorsotonals/ homothorax, the Drosophila homologue of meis1, interacts with extradenticle in patterning of the embryonic PNS. Development 125, 1037-1048. PubMed Citation: 9463350

Karlsson, D., Baumgardt, M. and Thor, S. (2010). Segment-specific neuronal subtype specification by the integration of anteroposterior and temporal cues. PLoS Biol. 8(5): e1000368. PubMed Citation: 20485487

Kim, K. H. and Yoo, S. (2013). Sequence-specific interaction between ABD-B homeodomain and castor gene in Drosophila. BMB Rep. Epub ahead of print] PubMed ID: 24219869

LaBeau, E. M., Trujillo, D. L. and Cripps, R. M. (2009). Bithorax complex genes control alary muscle patterning along the cardiac tube of Drosophila. Mech. Dev. 126(5-6): 478-86. PubMed Citation: 19272319

LaRonde-LeBlanc, N. A. and Wolberger, C. (2003). Structure of HoxA9 and Pbx1 bound to DNA: Hox hexapeptide and DNA recognition anterior to posterior. Genes Dev. 17: 2060-2072. PubMed Citation: 12923056

Lanzuolo, C., et al. (2007). Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex. Nat. Cell Biol. 9: 1167-1174. PubMed Citation: 17828248

Laslo, P., Spooner, C. J., Warmflash, A., Lancki, D. W., Lee, H. J., Sciammas, R., Gantner, B. N., Dinner, A. R. and Singh, H. (2006). Multilineage transcriptional priming and determination of alternate hematopoietic cell fates. Cell 126: 755-766. PubMed Citation: 16923394

Lee, M. G., Villa, R., Trojer, P., Norman, J., Yan, K. P., Reinberg, D., Di Croce, L. and Shiekhattar, R. (2007). Demethylation of H3K27 regulates Polycomb recruitment and H2A ubiquitination. Science 318: 447-450. PubMed Citation: 17761849

Lewis, D. L., DeCamillis, M. and Bennett, R. L. (2000). Distinct roles of the homeotic genes Ubx and abd-A in beetle embryonic abdominal appendage development. Proc. Natl. Acad. Sci. 97: 4504-4509. PubMed Citation: 10781052

Lewis, E. B. (1978). A gene complex controlling segmentation in Drosophila. Nature 276: 565-70. PubMed Citation: 103000

Li-Kroeger, D., Witt, L. M., Grimes, H. L., Cook, T. A. and Gebelein, B. (2008). Hox and senseless antagonism functions as a molecular switch to regulate EGF secretion in the Drosophila PNS. Dev. Cell 15(2): 298-308. PubMed Citation: 18694568

Lo, P. C. H., Skeath, J. B., Gajewski, K. Schulz, R. A. and Frasch, M. (2002). Homeotic genes autonomously specify the anteroposterior subdivision of the Drosophila dorsal vessel into aorta and heart. Dev. Bio. 251: 307-319. 12435360

Lovato, T. L., et al. (2002). The Hox gene abdominal-A specifies heart cell fate in the Drosophila dorsal vessel. Development 129: 5019-5027. 12397110

Macias, A., Casanova, J. and Morata, G. (1990). Expression and regulation of the abd-A gene of Drosophila. Development 110: 1197-207

Macias, A., Pelaz, S. and Morata, G. (1994). Genetic factors controlling the expression of the abdominal-A gene of Drosophila within its domain. Mech. Dev. 46: 15-25.

McCall, K., O'Connor, M. B. and Bender, W. (1994). Enhancer traps in the Drosophila bithorax complex mark parasegmental domains. Genetics 138: 387-399

Manak, J. R. Mathies, L. D. and Scott, M. P. (1994). Regulation of a decapentaplegic midgut enhancer by homeotic proteins. Development 120: 3605-3619

Mann, R. S., Lelli, K. M. and Joshi, R. (2009). Hox specificity unique roles for cofactors and collaborators. Curr. Top. Dev. Biol. 88: 63-101. PubMed Citation: 19651302

Marchetti, M., et al. (2003). Differential expression of the Drosophila BX-C in polytene chromosomes in cells of larval fat bodies: a cytological approach to identifying in vivo targets of the homeotic Ubx, Abd-A and Abd-B proteins. Development 130: 3683-3689. 12835385

Mathies, L.D., Kerridge, S. and Scott, M.P. (1994). Role of the teashirt gene in Drosophila midgut morphogenesis: secreted proteins mediate the action of homeotic genes. Development 120: 2799-2809

Merabet, S., et al. (2002). A green fluorescent protein reporter genetic screen that identifies modifiers of Hox gene function in the Drosophila embryo. Genetics 162: 189-202. 12242233

Merabet. S., et al. (2003). The hexapeptide and linker regions of the AbdA hox protein regulate its activating and repressive functions. Dev. Cell 4: 761-768. 12737810

Merabet, S., et al. (2007). A unique Extradenticle recruitment mode in the Drosophila Hox protein Ultrabithorax. Proc. Natl. Acad. Sci. 104: 16946-16951. PubMed Citation: 17942685

Michelson, A. M. (1994). Muscle pattern diversification in Drosophila is determined by the autonomous function of homeotic genes in the embryonic mesoderm. Development 120: 755-768

Mihaly, J., et al. (1997). In situ dissection of the Fab-7 region of the bithorax complex into a chromatin domain boundary and a Polycomb-response element. Development 124: 1809-1820

Mihaly, J., Misra, R. K. and Karch, F. (1998). A conserved sequence motif in Polycomb-response elements. Mol. Cell 1: 1065-1066

Mishra, K., et al. (2003). Trl-GAGA directly interacts with lola like and both are part of the repressive complex of Polycomb group of genes. Mech. Dev. 120: 681-689. 12834867

Mito, Y., Henikoff, J. G. and Henikoff, S. (2007). Histone replacement marks the boundaries of cis-regulatory domains. Science 315(5817): 1408-1411. Medline abstract: 17347439

Monier, B., Astier, M., Semeriva, M. and Perrin, L. (2005). Steroid-dependent modification of Hox function drives myocyte reprogramming in the Drosophila heart. Development 132(23): 5283-93. 16284119

Moore, L., et al. (1998). Gonadal mesoderm and fat body initially follow a common developmental path in Drosophila. Development 125(5): 837-844

Morey, C., et al. (2007). Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation. Development 134: 909-919. Medline abstract: 17251268

Mukai, M., Kashikawa, M. and Kobayashi, S. (1999). Induction of indora expression in pole cells by the mesoderm is required for female germ-line development in Drosophila melanogaster. Development 126: 1023-1029. Medline abstract: 9927602

Neuteboom, S. T. and Murre, C. (1997). Pbx raises the DNA binding specificity but not the selectivity of Antennapedia Hox proteins. Mol. Cell. Biol. 17(8): 4696-4706. PubMed Citation: 9234726

Noro, B., Lelli, K., Sun, L. and Mann, R. S. (2011). Competition for cofactor-dependent DNA binding underlies Hox phenotypic suppression. Genes Dev. 25(22): 2327-32. PubMed Citation: 22085961

Okano, H. and Temple, S. (2009). Cell types to order: temporal specification of CNS stem cells. Curr. Opin. Neurobiol. 19: 112-119. PubMed Citation: 19427192

Oosterveen, T., et al. (2003). Retinoids regulate the anterior expression boundaries of 5' Hoxb genes in posterior hindbrain. EMBO J. 22(2): 262-9. 12514132

Parrish, J. Z., et al. (2007). Polycomb genes interact with the tumor suppressor genes hippo and warts in the maintenance of Drosophila sensory neuron dendrites. Genes Dev. 21: 956-972. Medline abstract: 17437999

Patterson, L. T., Pembaur, M. and Potter, S. S. (2001). Hoxa11 and Hoxd11 regulate branching morphogenesis of the ureteric bud in the developing kidney. Development 128: 2153-2161. 11493536

Peterson, M. D., et al. (1999). The embryonic expression pattern of labial, posterior homeotic complex genes and the teashirt homologue in an apterygote insect. Dev. Genes Evol. 209: 77-90

Ponzielli, R., et al. (2002). Heart tube patterning in Drosophila requires integration of axial and segmental information provided by the Bithorax Complex genes and hedgehog signaling. Development 129: 4509-4521. 12223408

Popperl, H., Bienz, M., Studer, M., Chan, S.-K., Aparicio, S., Brenner, S., Mann, R.S., and Krumlauf, R. (1995). Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx. Cell 81: 1031-1042. 7600572

Postika, N., Metzler, M., Affolter, M., Muller, M., Schedl, P., Georgiev, P. and Kyrchanova, O. (2018). Boundaries mediate long-distance interactions between enhancers and promoters in the Drosophila Bithorax complex. PLoS Genet 14(12): e1007702. PubMed ID: 30540750

Pownall, M. E., et al. (1996). eFGF, Xcad3 and Hox genes form a molecular pathway that establishes the anteroposterior axis in Xenopus. Development 122: 3881-3892

Prokop, A. and Technau, G. M. (1994). Early tagma-specific commitment of Drosophila CNS progenitor NB1-1. Development 120: 2567-78. PubMed Citation: 7956832

Prokop, A ., et al. (1998). Homeotic regulation of segment-specific differences in neuroblast numbers and proliferation in the Drosophila central nervous system. Mech. Dev. 74(1-2): 99-110. PubMed Citation: 9651493

Regulski, M. et. al. (1985). Homeo Box genes of the Antennapedia and Bithorax complexes of Drosophila. Cell 43: 71-80. PubMed Citation: 2416463

Rogers, W. A., Grover, S., Stringer, S. J., Parks, J., Rebeiz, M. and Williams, T. M. (2014). A survey of the trans-regulatory landscape for Drosophila melanogaster abdominal pigmentation. Dev Biol 385: 417-432. PubMed ID: 24269556

Rougvie, A. E. and Ambros, V. (1995). The heterochronic gene lin-29 encodes a zinc finger protein that controls a terminal differentiation event in Caenorhabditis elegans. Development 121: 2491-2500. PubMed Citation: 7671813

Rousset, R., Carballes, F., Parassol, N., Schaub, S., Cerezo, D. and Noselli, S. (2017). Signalling crosstalk at the leading edge controls tissue closure dynamics in the Drosophila embryo. PLoS Genet 13(2): e1006640. PubMed ID: 28231245

Ryoo, H. D, and Mann, R. S. (1999). The control of trunk Hox specificity and activity by Extradenticle. Genes Dev. 13: 1704-1716. PubMed Citation: 10398683

Rudolph, T., et al. (2007). Heterochromatin formation in Drosophila is initiated through active removal of H3K4 methylation by the LSD1 homolog SU(VAR)3-3. Mol. Cell 26(1): 103-15. Medline abstract: 17434130

Saffman, E. E. and Krasnow, M. A. (1994). A differential response element for the homeotics at the Antennapedia P1 promoter of Drosophila. Proc Natl Acad Sci 91: 7420-7424

Saiz-Lopez, P., Chinnaiya, K., Towers, M. and Ros, M. A. (2017). Intrinsic properties of limb bud cells can be differentially reset. Development [Epub ahead of print]. PubMed ID: 28087638

Sambrani, N., Hudry, B., Maurel-Zaffran, C., Zouaz, A., Mishra, R., Merabet, S. and Graba, Y. (2013a). Distinct molecular strategies for Hox-mediated limb suppression in Drosophila: from cooperativity to dispensability/antagonism in TALE partnership. PLoS Genet 9: e1003307. PubMed ID: 23505377

Sambrani, N., Pradel, J. and Graba, Y. (2013b). Distinct genetic requirements for BX-C mediated specification of abdominal denticles. Dev Dyn. PubMed ID: 24155218

Sanchez-Herrero, E. (1991). Control of the expression of the bithorax complex genes abdominal-A and Abdominal-B by cis-regulatory regions in Drosophila embryos. Development 111: 437-49

Sanchez-Herrero, E., et al. (1994). Developmental consequences of unrestricted expression of the abd-A gene of Drosophila. Mech Dev 46: 153-167

Shimell, M. J., et al. (2000). Functional analysis of repressor binding sites in the iab-2 regulatory region of the abdominal-A homeotic gene. Dev. Biol. 218: 38-52

Shimizu, T., Bae, Y.-K. and Hibi, M. (2006). Cdx-Hox code controls competence for responding to Fgfs and retinoic acid in zebrafish neural tissue. Development 133: 4709-4719. Medline abstract: 17079270

Shippy, T. D., Brown, S. J. and Denell, R. E. (1998). Molecular characterization of the Tribolium abdominal-A ortholog and implications for the products of the Drosophila gene. Dev. Genes Evol. 207(7): 446-52

Smith, E. R., Lee, M. G., Winter, B., Droz, N. M., Eissenberg, J. C., Shiekhattar, R. and Shilatifard, A. (2008). Drosophila UTX is a histone H3 Lys27 demethylase that colocalizes with the elongating form of RNA polymerase II. Mol. Cell. Biol. 28: 1041-1046. PubMed Citation: 18039863

Srinivasan, R., Mager, G. M., Ward, R. M., Mayer, J. and Svaren, J. (2006). NAB2 represses transcription by interacting with the CHD4 subunit of the nucleosome remodeling and deacetylase (NuRD) complex. J. Biol. Chem. 281: 15129-15137. PubMed Citation: 16574654

Stark, A., Bushati, N., Jan, C. H., Kheradpour, P., Hodges, E., Brennecke, J., Bartel, D. P., Cohen, S. M. and Kellis, M. (2008). A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands. Genes Dev. 22(1): 8-13. PubMed citation: 18172160

Strutt, H., Cavalli, G. and Paro, R. (1997). Co-localization of Polycomb protein and GAGA factor on regulatory elements responsible for the maintenance of homeotic gene expression. EMBO J. 16:3621-3632

Suska, A., Miguel-Aliaga, I. and Thor, S. (2011). Segment-specific generation of Drosophila Capability neuropeptide neurons by multi-faceted Hox cues. Dev. Biol. 353(1): 72-80. PubMed Citation: 21354130

Svaren, J., Sevetson, B. R., Apel, E. D., Zimonjic, D. B., Popescu, N. C. and Milbrandt, J. (1996). NAB2, a corepressor of NGFI-A (Egr-1) and Krox20, is induced by proliferative and differentiative stimuli. Mol. Cell. Biol. 16: 3545-3553. PubMed Citation: 8668170

Szuts, D., Freeman, M. and Bienz, M. (1997). Antagonism between EGFR and Wingless signalling in the larval cuticle of Drosophila. Development 124(16): 3209-3219

Tamirisa, S., Papagiannouli, F., Rempel, E., Ermakova, O., Trost, N., Zhou, J., Mundorf, J., Brunel, S., Ruhland, N., Boutros, M., Lohmann, J. U. and Lohmann, I. (2018). Decoding the regulatory logic of the Drosophila male stem cell system. Cell Rep 24(11): 3072-3086. PubMed ID: 30208329

Tie, F., et al. (2009). CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development 136(18): 3131-41. PubMed Citation: 19700617

Tsuji, T., Hasegawa, E. and Isshiki, T. (2008). Neuroblast entry into quiescence is regulated intrinsically by the combined action of spatial Hox proteins and temporal identity factors. Development 135(23): 3859-69. PubMed Citation: 18948419

Vachon, G. (1992). Homeotic genes of the bithroax complex repress limb development in the abdomen of the Drosophila embryo through the target gene Distal-less. Cell 71: 437-450

van den Akker, E., et al. (1999). Targeted inactivation of Hoxb8 affects survival of a spinal ganglion and causes aberrant limb reflexes. Mech. Dev. 89: 103-114

van Den Akker, E., et al. (2001). Axial skeletal patterning in mice lacking all paralogous group 8 Hox genes. Development. 128(10): 1911-21. 11311170

van Dijk, M. A. and Murre, C. (1994). Extradenticle raises the DNA binding specificity of homeotic selector gene products. Cell 78: 617-624

Vermot, J., et al. (2005). Retinaldehyde dehydrogenase 2 and Hoxc8 are required in the murine brachial spinal cord for the specification of Lim1+ motoneurons and the correct distribution of Islet1+ motoneurons. Development 132(7): 1611-21 . 15753214

Walsh, C. M. and Carroll, S. B. (2007). Collaboration between Smads and a Hox protein in target gene repression. Development 134: 3585-3592. PubMed Citation: 17855427

Wiellette, E. L. and McGinnis, W. (1999). Hox genes differentially regulate Serrate to generate segment-specific structures. Development 126(9): 1985-1995. Medline abstract: 10101132

White, R. A. H., et al. (2000). The design and analysis of a homeotic response element. Mech. Dev. 91: 217-226. PubMed Citation: 10704846

Witt, L. M. et al. (2010). Atonal, senseless, and abdominal-A regulate rhomboid enhancer activity in abdominal sensory organ precursors. Dev. Biol. 344: 1060-1070. PubMed Citation: 20478292

Zheng, Z., et al. (1999). Homeotic gene expression in the wild-type and a homeotic mutant of the moth Manduca sexta. Dev. Genes Evol. 209: 460-472

Zouaz, A., Auradkar, A., Delfini, M. C., Macchi, M., Barthez, M., Ela Akoa, S., Bastianelli, L., Xie, G., Deng, W. M., Levine, S. S., Graba, Y. and Saurin, A. J. (2017). The Hox proteins Ubx and AbdA collaborate with the transcription pausing factor M1BP to regulate gene transcription. EMBO J. PubMed ID: 28871058

date revised: 15 April 2019