Polycomb

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Alkema, M. J., et al. (1997b). Identification of Bmi1-interacting proteins as constituents of a multimeric mammalian Polycomb complex. Genes Dev. 11: 226-240. PubMed Citation: 9009205

Alkema, M. J., et al. (1997b). MPc2, a new murine homolog of the Drosophila polycomb protein is a member of the mouse polycomb transcriptional repressor complex. J. Mol. Biol. 273(5): 993-1003. PubMed Citation: 9367786

Aravin, A. A., Naumova, N. M., Tulin, A. A., Rozovsky, Y. M. and Gvozdev V. A. (2001). Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in Drosophila melanogaster germline. Curr. Biol. 11: 1017-1027. 11470406

Atchison, L., Ghias, A., Wilkinson, F., Bonini, N. and Atchison, M. L. (2003). Transcription factor YY1 functions as a PcG protein in vivo. EMBO J. 22(6): 1347-58. 12628927

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Bantignies, F., et al. (2003). Inheritance of Polycomb-dependent chromosomal interactions in Drosophila. Genes Dev. 17: 2406-2420. 14522946

Bardos, J. I., Saurin, A. J., Tissot, C., Duprez, E. and Freemont, P. S. (2000). HPC3 is a new human polycomb orthologue that interacts and associates with RING1 and Bmi1 and has transcriptional repression properties. J. Biol. Chem. 275(37): 28785-92. 1082516

Bejarano, F., Gonzalez, I., Vidal, M. and Busturia, A. (2005). The Drosophila RYBP gene functions as a Polycomb-dependent transcriptional repressor. Mech. Dev. 122(10): 1118-29. 16125914

Bel, S., et al. (1998). Genetic interactions and dosage effects of Polycomb group genes in mice. Development 125(18): 3543-3551. PubMed Citation: 9716520

Bel-Vialar, S., et al. (2000). Altered retinoic acid sensitivity and temporal expression of Hox genes in Polycomb-M33-deficient mice. Dev. Biol. 224: 238-249. PubMed Citation: 10926763

Bell. E. et. al., (2010). Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing. Nature Structural &ersand; Molecular Biology. 17: 894-900. PubMed Citation: 20562853

Bello, B., Holbro, N. and Reichert, H. (2007). Polycomb group genes are required for neural stem cell survival in postembryonic neurogenesis of Drosophila. Development 134(6): 1091-9. Medline abstract: 17287254

Bender, W. and Fitzgerald, D. P. (2002). Transcription activates repressed domains in the Drosophila bithorax complex. Development 129: 4923-4930. 12397101

Bernstein, E., Duncan, E. M., Masui, O., Gil, J., Heard, E. and Allis, C. D. (2006). Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin. Mol. Cell. Biol. 26(7): 2560-9. 16537902

Beisel, C., et al. (2007). Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins. Proc. Natl. Acad. Sci. 104(42): 16615-16620. Medline abstract: 17921257

Bloyer, S., et al. (2003). Identification and characterization of polyhomeotic PREs and TREs. Dev. Biol. 261: 426-442. 14499651

Boivin, A., et al. (2003). Telomeric associated sequences of Drosophila recruit Polycomb-group proteins in vivo and can induce pairing-sensitive repression. Genetics 164: 195-208. 12750332

Bornemann, D., Miller, E. and Simon J. (1998). Expression and properties of wild-type and mutant forms of the Drosophila Sex Comb on Midleg (SCM) repressor protein. Genetics 150: 675-686. PubMed Citation: 9755199

Bowman, S. K., Deaton, A. M., Domingues, H., Wang, P. I., Sadreyev, R. I., Kingston, R. E., Bender, W. (2014) H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex. Elife (Cambridge): e02833. PubMed ID: 25082344

Boyer, L. A., et al. (2006). Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441: 349-353. Medline abstract: 16625203

Breiling, A., et al. (1999). The Drosophila polycomb protein interacts with nucleosomal core particles in vitro via its repression domain. Mol. Cell. Biol. 19(12): 8451-60. PubMed Citation: 10567570

Breiling, A., et al. (2001). General transcription factors bind promoters repressed by Polycomb group proteins. Nature 412: 651-655. 11493924

Brizuela, B. J. and Kennison, J. A. (1997). The Drosophila homeotic gene moira regulates expression of engrailed and HOM genes in imaginal tissues. Mech. Dev. 65(1-2): 209-220. PubMed Citation: 9256357

Brown, J. L., Fritsch, C., Mueller, J. and Kassis, J. A. (2003). The Drosophila pho-like gene encodes a YY1-related DNA binding protein that is redundant with pleiohomeotic in homeotic gene silencing. Development 130: 285-294. 12466196

Buchenau, P., et al. (1998). The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing. J. Cell Biol. 141(2): 469-481 98215719

Busturia, A. and Bienz, M. (1993). Silencers in abdominal-B, a homeotic Drosophila gene. EMBO J 12: 1415-25. PubMed Citation: 8096812

Busturia, A., Wightman, C. D. and Sakonju, S. (1997). A silencer is required for maintenance of transcriptional repression throughout Drosophila development. Development 124(21): 4343-4350

Cavalli, G. and Paro R. (1998). The Drosophila Fab-7 chromosomal element conveys epigenetic inheritance during mitosis and meiosis. Cell 93(4): 505-518. PubMed Citation: 9604927

Cavalli, G. and Paro, R. (1999). Epigenetic inheritance of active chromatin after removal of the main transactivator. Science 286(5441): 955-8. PubMed Citation: 10542150

Chan, C-S., Rastelli, L. and Pirrotta, V. (1994). A Polycomb response element of the Ubx gene that determines an epigenetically inherited state of repression. EMBO J 11: 2553-64. PubMed Citation: 7912192

Chang, Y. L., et al. (1995). Functional reconstruction of trans regulation of the Ultrabithorax promoter by the products of two antagonistic genes, trithorax and Polycomb. Mol Cell Biol 15: 6601-6612. PubMed Citation: 8524225

Chang, Y.-L., et al. (2001). Essential role of Drosophila Hdac1 in homeotic gene silencing. Proc. Natl. Acad. Sci. Vol. 98: 9730-9735. 11493709

Cheng, N.N. (1994). Interactions of polyhomeotic with polycomb group genes of Drosophila melanogaster. Genetics 138: 1151-62. PubMed Citation: 7896097

Chen, X., Hiller, M., Sancak, Y. and Fuller. M. T. (2005). Tissue-specific TAFs counteract Polycomb to turn on terminal differentiation. Science 310: 869-872. 16272126

Chen, X., Lu, C., Prado, J. R., Eun, S. H. and Fuller, M. T. (2011). Sequential changes at differentiation gene promoters as they become active in a stem cell lineage. Development 138(12): 2441-50. PubMed Citation: 21610025

Cheng, Y., et al. (2012). P-element homing is facilitated by engrailed polycomb-group response elements in Drosophila melanogaster. PLoS One 7(1): e30437. PubMed Citation: 22276200

Cheutin, T. and Cavalli, G. (2012). Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion. PLoS Genet 8: e1002465. PubMed ID: 22275876

Chiang, A., et al. (1995). Discrete Polycomb-binding sites in each parasegmental domain of the bithorax complex. Development 121: 1681-1689. PubMed Citation: 7600985

Chinwalla, V., Jane, E. P. and Harte, P. J. (1995). The Drosophila trithorax protein binds to specific chromosomal sites and is co-localized with Polycomb at many sites. EMBO J 14: 2056-2065. PubMed Citation: 7744011

Christen, B and Bienz, M. (1994). Imaginal disc silencers from Ultrabithorax: evidence for Polycomb response elements. Mech Dev 48: 255-266. PubMed Citation: 7893606

Cléard, F., Delattre, M. and Spierer, P. (1997). SU(VAR)3-7, a Drosophila heterochromatin-associated protein and companion of HP1 in the genomic silencing of position-effect variegation. EMBO J. 16(17): 5280-5288. PubMed Citation: 9311988

Comet, I., et al. (2006). PRE-mediated bypass of Two Su(Hw) insulators targets PcG proteins to a downstream promoter. Dev. Cell 11: 117-124. 16824958

Comet, I., et al. (2011). A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber. Proc. Natl. Acad. Sci. 108(6): 2294-9. PubMed Citation: 21262819

Cooper, S., Dienstbier, M., Hassan, R., Schermelleh, L., Sharif, J., Blackledge, N. P., De Marco, V., Elderkin, S., Koseki, H., Klose, R., Heger, A. and Brockdorff, N. (2014). Targeting polycomb to pericentric heterochromatin in embryonic stem cells reveals a role for H2AK119u1 in PRC2 recruitment. Cell Rep 7: 1456-1470. PubMed ID: 24857660

Coré, N., et al. (1997). Altered cellular proliferation and mesoderm patterning in Polycomb-M33-deficient mice. Development 124, 721-729. PubMed Citation: 9043087

Cubenas-Potts, C., Rowley, M. J., Lyu, X., Li, G., Lei, E. P. and Corces, V. G. (2017). Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture. Nucleic Acids Res 45(4): 1714-1730. PubMed ID: 27899590

Curt, J. R., Yaghmaeian Salmani, B. and Thor, S. (2019). Anterior CNS expansion driven by brain transcription factors. Elife 8. PubMed ID: 31271353

Czermin, B., et al. (2002). Drosophila Enhancer of Zeste/Esc complexes have a histone H3 methyltransferase activity that marks chromosomal polycomb sites. Cell 111: 185-196. 12408863

Dahiya, A., et al. (2001). Linking the Rb and Polycomb pathways. Mol. Cell 8: 557-568. 11583618

Daubresse, G., Deuring, R., Moore, L., Papoulas, O., Zakrajsek, I., Waldrip, W. R., Scott, M. P., Kennison, J. A. and Tamkun, J. W. (1999). The Drosophila kismet gene is related to chromatin-remodeling factors and is required for both segmentation and segment identity. Development 126: 1175-1187. 10021337

Dejardin, J., Rappaillles, A., Cuvier, O., Grimaud, C., Decoville, M., Locker, D. and Cavalli, G. (2005). Recruitment of Drosophila Polycomb group proteins to chromatin by DSP1. Nature 434: 533-538. 15791260

Du, J., Zhang, J., He, T., Li, Y., Su, Y., Tie, F., Liu, M., Harte, P. J. and Zhu, A. J. (2016). Stuxnet facilitates the degradation of polycomb protein during development. Dev Cell 37(6): 507-519. PubMed ID: 27326929

Eagen, K. P., Aiden, E. L. and Kornberg, R. D. (2017). Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map. Proc Natl Acad Sci U S A 114(33): 8764-8769. PubMed ID: 28765367

Eaton, M. L., Prinz, J. A., MacAlpine, H. K., Tretyakov, G., Kharchenko, P. V. and MacAlpine, D. M. (2011). Chromatin signatures of the Drosophila replication program. Genome Res 21: 164-174. PubMed ID: 21177973

El-Sharnouby, S., Redhouse, J. and White, R. A. (2013). Genome-wide and cell-specific epigenetic analysis challenges the role of polycomb in Drosophila spermatogenesis. PLoS Genet 9: e1003842. PubMed ID: 24146626

Enderle, D., Beisel, C., Stadler, M. B., Gerstung, M., Athri, P. and Paro, R. (2011). Polycomb preferentially targets stalled promoters of coding and noncoding transcripts. Genome Res 21: 216-226. PubMed ID: 21177970

Ernst, P., Wang, J., Huang, M., Goodman, R. H. and Korsmeyer, S. J. (2001). MLL and CREB bind cooperatively to the nuclear coactivator CREB-binding protein. Mol. Cell. Biol. 21: 2249-2258. PubMed Citation: 11259575

Espinosa, L., Bigas, A. and Mulero, M. C. (2014). Novel functions of chromatin-bound IkappaBalpha in oncogenic transformation. Br J Cancer [Epub ahead of print]. PubMed ID: 25233399

Fang, M., Ren, H., Liu, J., Cadigan, K. M., Patel, S. R. and Dressler, G. R. (2009). Drosophila ptip is essential for anterior/posterior patterning in development and interacts with the PcG and trxG pathways. Development 136(11): 1929-38. PubMed Citation: 19429789

Fay, A., Misulovin, Z., Li, J., Schaaf, C. A., Gause, M., Gilmour, D. S. and Dorsett, D. (2011). Cohesin selectively binds and regulates genes with paused RNA polymerase. Curr Biol 21: 1624-1634. PubMed ID: 21962715

Ficz, G., Heintzmann, R. and Arndt-Jovin, D. J. (2005). Polycomb group protein complexes exchange rapidly in living Drosophila. Development 132(17): 3963-76. 16079157

Filion, G. J., van Bemmel, J. G., Braunschweig, U., Talhout, W., Kind, J., Ward, L. D., Brugman, W., de Castro, I. J., Kerkhoven, R. M., Bussemaker, H. J. and van Steensel, B. (2010). Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. Cell 143: 212-224. PubMed ID: 20888037

Fischle, W., et al. (2003). Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains. Genes Dev. 17: 1870-1881. 12897054

Fonseca, J. P., Steffen, P. A., Muller, S., Lu, J., Sawicka, A., Seiser, C. and Ringrose, L. (2012). In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells. Genes Dev 26: 857-871. PubMed ID: 22508729

Francis, N. J., et al. (2001) Reconstitution of a functional core Polycomb repressive complex. Mol. Cell 8: 545-556. 11583617

Francis, N. J., et al. (2009). Polycomb proteins remain bound to chromatin and DNA during DNA replication in vitro. Cell 137(1): 110-22. PubMed Citation: 19303136

Franke, A., et al. (1992). Polycomb and polyhomeotic are constituents of a multimeric protein complex in chromatin of Drosophila melanogaster. EMBO J 11: 2941-50

Franke, A., Messmer, S. and Paro, R. (1995). Mapping functional domains of the polycomb protein of Drosophila melanogaster. Chromosome Res 3: 351-360

Fyodorov, D. V., Blower, M. D., Karpen, G. H. and Kadonaga, J. T. (2004). Acf1 confers unique activities to ACF/CHRAC and promotes the formation rather than disruption of chromatin in vivo. Genes Dev. 18(2): 170-83. Medline abstract: 14752009

Garcia, E., et al. (1999). RYBP, a new repressor protein that interacts with components of the mammalian Polycomb complex, and with the transcription factor YY1. EMBO J. 18(12): 3404-18. 10369680

Gaytán de Ayala Alonso, A., et al. (2007). A genetic screen identifies novel polycomb group genes in Drosophila. Genetics 176: 2099-2108. PubMed Citation: 17717194

Gehani, S. S., Agrawal-Singh, S., Dietrich, N., Christophersen, N. S., Helin, K. and Hansen, K. (2010). Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation. Mol Cell 39: 886-900. PubMed ID: 20864036

Gerasimova, T. I. and Corces, V. G. (1998). Polycomb and trithorax group proteins mediate the function of a chromatin insulator. Cell 92(4): 511-521

Gindhart, J. G. and Kaufman, J. C. (1995). Identification of Polycomb and trithorax group responsive elements in the regulatory region of the Drosophila homeotic gene Sex combs reduced. Genetics 139: 797-814

Goldman-Levi, R., et al. (1996). Expanding the MOT1 subfamily; 89B helicase encodes a new Drosophila melanogaster SNF2-related protein which binds to multiple sites on polytene chromosomes. Nucleic Acids Res. 24: 3121-3128

Gonzalez, I., Mateos-Langerak, J., Thomas, A., Cheutin, T. and Cavalli, G. (2014). Identification of regulators of the three-dimensional polycomb organization by a microscopy-based genome-wide RNAi screen. Mol Cell 54: 485-499. PubMed ID: 24703951

Goodliffe, J. M., Wieschaus, E. and Cole, M. D. (2005). Polycomb mediates Myc autorepression and its transcriptional control of many loci in Drosophila. Genes Dev. 19(24): 2941-6. 16357214

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Gutiérrez, L., et al. (2012). The role of the histone H2A ubiquitinase Sce in Polycomb repression. Development 139(1): 117-27. PubMed Citation: 22096074

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Herz, H. M., Morgan, M., Gao, X., Jackson, J., Rickels, R., Swanson, S. K., Florens, L., Washburn, M. P., Eissenberg, J. C. and Shilatifard, A. (2014). Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling. Science 345: 1065-1070. PubMed ID: 25170156

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Kahn, T. G., Stenberg, P., Pirrotta, V. and Schwartz, Y. B. (2014). Combinatorial interactions are required for the efficient recruitment of pho repressive complex (PhoRC) to polycomb response elements. PLoS Genet 10: e1004495. PubMed ID: 25010632

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Lagarou, A., et al. (2008). dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing. Genes Dev. 22: 2799-2810. PubMed Citation: 18923078

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